Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200003"

Accession numberr200003 [export]
Locus nameORF3
Recode1 namepol_m_vir_cabyv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCucurbit aphid-borne yellows virus [details]
AcronymCABYV

Sequence

GenBank IDsX76931.1
SequenceRNA of 5669 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,488)
ACAAAAGATA CGAGCGGGTG ATGCAAATTG AGTCTGTCAA GCAACAATTA ATTTTCAGAC CTACCCGACG CACGAGCATA AACGATCGCA AGTTAAACGT AGCTAACTTT CTGATCAATC ACTCTTTCTT TTTAGCGATC AATGGCACCA ACCTACTTCG CCTTTTTCTT GCTCGTCTGC CTCTGCTCAT CAGTGAGCAG TTATCAGGGG ACTATGTTTA TACCCCTGGA GCCAGCAAAC GCATCATACT GGCTCGATTC CACCGACATT GCGGTGCCCC CCTCCCATCC TCAAGTGCAG TTGATCTACG ACTGCCCGCC TCAAAAGATG TTGCGCGATT TTTCCTCGCG CGACATTACT CTAGAGCTCT GGGAGAGAGG ATACAACGAA ACCAGACAAG CCTTTTCAGA GGCTATGCAG AATTTGCAAA ATTTATTAAT GTCTGGTGTT CGTCAATTTC ACACAGGCTT GGAGAGTTTA CTCCACGTAA TTTTACAAAC GGCAGCATAT TTGTGGACCT CTCTAATTTG GGCCACAGCC TGTGCGACTT GGTACTTGCT CAGCAAGTAC ACGATCGAGA TGCTTACACT CGCCTCGCTT TACATATCCA CCGTATATAT GGTGAAGATG GCGGCTTGGA TTTTTGGCGA CTTGCCAATT TCCCTTCTAA AAGCTGGCCT TTCAATGGTG AGAGGTGTCT CGAGGGCTCT GTGGTACAAA AGGAGCTACA ACGCTGAGAA ATCCGTAGAG GGTTATCTTT CATTCAAAAT TCCACAGAAC CCCCCCAAAA ACTCGGTCTT GCAGGTCCAA TATAAGGACG GATCGCATGC CGGGTATGCT ACTTGTGTGA CGCTGTACAA TGGAACGAAT GGGCTTCTCA CGGCCTATCA TGTCGCTGTC CCAGGTAGCA AAGTCGTCTC CACCAGGAAC GGAAACAAGG TTCCTCTCTC TGAATTCAGA TCCATTATGG AATCTGAAAA GAGGGATCTT GTGCTGCTGG CGGGTCCCCC AAACTGGGAA GGCACCCTAG CCTGCAAAGC AGTTCAGTTC CAATCTGCCC AGAACCTTTG CAAATCAAAG GCCTCCTTCT ATGCTTACGA CGGAGAGGGA TGGATCTCAT CCAATGCTGA AATTGTTGGC ATTGCGGAGG GCAAAACCCA TGCATCTGTG TTGAGCAATA CGGATGCTGG TCACAGTGGC ACCCCATATT TCAATGGCAG AACAGTTTTG GGTGTTCACG TTGGTGGAGC CAAAGACGAA AACTTCAATT ACATGGCCCC CATACCGCCC GTTTATGGTC TCACAAGCCC CAGCTACGAA TTTGAGACCA CGGCCCCCCA AGGACGCCTG TTTACACAGG AGGAGATAGA AGAACTCATT GAAGAATTTT CTTTCAGTGA GATCACGTCC ATAATGGGGC ATCGCCGATT TCATCAAATG CACGACTCGC AGCGACATCA AGCTGATTAT GAATACGAGT CGGGAAACGG GCAGGCGGCG GCGACCGCCG AAACAACCGC ACCCGATGCC ACCCCCGCGG TTGGGCGCAC AAGTGGAGAC GCACAGTCTC CTGCTGCTCC CTCTTCCCCG AGGGTCAACA CGTACACACC TCCGAACAAA CGGGAAAACC GCACTGCTTC TGCAGTATCC CCCACCACCA GTGCTTCTAC CGACACTTTG TCGGAAATCA AACAGGTAAT AATGGACAAA ATCGATGTCC ATTCAATAGA GAAGCAAGTG GTCCAAGCCT TGGCGGACAA AGCCATGAAG AAACCGAGGT CGCGCAGACG CGGCAAGAGA AGTTCGAAGA ACTCGCAACC GACTTCTCAA GTTTCTTCGA TGCCCAGTAC ACCTGGGAAC AAGGCGGGGA AGAAGCCCCA GGATTCGACA AAGTCGGATC CCTCCCCCAG TTTTACCACG CTAAACAAAA GAAAAGCTCG AATTGGGGAG ACAAAATCTG CAAACAGCAC CCAGAAATGG GTGATCTCAC AAAGGGCTTC GGGTGGCCCC AGTTCGGCGC AAAAGCTGAA CTAAAATCGT TGCGGCTACA AGCCGCGCGT TGGCTGGAGC GTGCCCAGTC AGTTAAAATC CCCTCATCTG AGGAGCGGGA GCACGTTATA GAGAGATGCT GTCGGGCGTA TCAAGCTGCT AAAACTAATG GCCCGATGGC GACGAGAGGA GATCGACTTT CCTGGGATAA CTTCCTACAG GATTTCAAAC AGGCGGTCCT CTCGTTGGAA ATGGACGCAG GCATAGGAGT TCCGTACATA GCTTACGGCA AGCCAACCCA CCGTGGGTGG GTTGAAGACA AGAAACTCCT TCCGATATTG GCTCGTCTCA CCTTCAACCG GTTACAGAAG ATGTTGGAGG TAAGATATGT TGACTTATCG CCTGCGGAGC TTGTGCGAAG GGGTCTCTGT GACCCTATTC GAGTATTTGT AAAAGGTGAA CCGCACAAGC AAGCAAAATT AGATGAAGGC CGCTACCGCC TCATCATGAG CGTCTCTCTA GTTGACCAAT TGGTAGCCCG GGTTTTATTC CAAAATCAAA ACAAGCGCGA GATAGCGTTG TGGAGAGTGG TTCCCTCCAA ACCCGGTTTT GGCTTGTCTA CGGATGAGCA AGTGGCGGAG TTCATGCAGA TTCTCTCCGC CCAAGTCGGG CTAACGCCTT CGGATCTGAT CACCGAGTGG CGAGCCCATA TGATAGCAAC TGACTGCTCC GGTTTTGACT GGAGCGTTTC GGACTGGCTC CTTGAAGATG ATATGGAGGT CCGAAACCGC CTGACGCTCG ATTTAAACGA GACCACGCGC CGTTTGCGCA GCTGGTTATA TTGCATATCG AATAGCGTCC TCTGCCTTTC AGATGGAACA TTATTAGCGC AGAGAGTCCC GGGCGTGCAG AAGAGTGGCA GCTACAATAC GTCATCGAGT AATTCCCGAA TCCGGGTGAT GGCTGCCTAC CACTGCGGCG CAGAATGGGC TATGGCGATG GGCGACGATG CCCTCGAGTC AGCTTGCTCG AACCTCGAGC GTTACAAATC GCTCGGTTTT AAAGTCGAGG AGTCCTCAAA ACTGGAATTC TGTTCTCACA TCTTTGAGAA AGAGGACCTC GCCATTCCGG TCAACAAGGC CAAAATGCTC TATAAGCTTA TACATGGCTA TGAACCGGAA TGCGGCAATG TGGAAGTCCT GATCAATTAT TTGGCCGCCT GCTTTTCTAT TCTTAATGAA TTGCGGTCTG ATCCTTCCCT TGTCGAAACT CTCCATCAGT GGCTGGTTGC TCCAGTACAG CCACAAAAGA TATAAGGGGA GTATAAAGAA CACTAGCCAA GCACACACGA GTTGCAAGCA TTGGAAGTCT GAGTCTCGTT ACCAAGAGTC CACACAATAG ATTATAAGTT TCTCGCAGGA TTTTCAAGCG GTCTATTGTC TGCAATACCC ATCACGGTAA TCGGACTCTA TTTTGTCTAC CTAAAGATTT CAGCACACGT GCGTTCAATT GTTAATGAAT ACGGTCGCGG CTAGAAATCA AAATGCAGGG AGGCGAAGGC GAAGAAATCA GCGCCCTGCG CGGCGCGACC GCGTGGTTGT GGTCAACCCC ATTGGGGGAC CACCGCGCGG AAGACGACAA CGAAGAAACC GCCGACGCCC TAATCGAGGA GGCAGAGCTA GAAGAGGAAG CCCAGGCGAA ACATTTGTAT TTTCAAAGGA CAATCTCACG GGCAGTTCCA CAGGAAGTAT CACCTTCGGG CCGTCTCTTT CAGAGAGCCC AGCATTCAGC TCTGGAATAC TCAAGGCCTA CCATGAATAT AAGATCATCA TGGTCCAGCT GGAGTTCATC TCCGAGGCCT CTTCCACCTC CTCGGGTTCC ATCTCTTATG AGTTGGACCC CCACTGCAAG CTTAGCTCCC TCCAATCCAC GATTAATAAA TTTGGAATCA CCAAGAGTGG ATTGCGACGT TGGACCGCTA AGCAGATCAA CGGGATGGAA TGGCATGATG CAACCGAAGA CCAGTTCAAG ATCCTCTATA AAGGGAATGG ATCTTCCTCG GTTGCGGGCA GCTTCAGAAT CACCATCAAG TGCCAGGTCC AGAACCCGAA ATAGGTAGAC GGCAGTTCCC CCCCCCCCCC AAGTCCTAGT CCAACCCCAC CACCTCCACC ACCCCCTCAG CCTCAACCCC AGCCTTGCGC CCAGCGTTTT TGGGGTTATG AAGGCAACCC ACAAAATAAA ATACTCACGG CTGAAAATTC AAGGAATATT GATTCCCGGC CGTTGAATTT CGTGCAAATG TACAAGTGGG AAGATGAGAA GTGGGACAAG GTCAACTTGC AAGCCGGATA TTCTCGCAAT GACCGACGTT GTATGGAGAC GTACCTCACA ATTCCAGCAG ATAAAGGAAA ATTTCATGTT TATCTTGAAG CTGATGGTGA GTTCGTCGTC AAGCACATCG GTGACGAGCT TGACGGTAGT TGGCTCGGAA ATATCGCTTA TGATGTTTCC CAAAGAGGTT GGAACGTAGG GAATTACAAA GGCTGTAAAA TCACAAATTA CCAATCTAAT ACAGTTTTTG TGGCAGGACA TCCCGACGCA ACAATGAATG GTAAAAGTTT TGACACTGCG CGGGCCGTTG AAGTCGATTG GTTCGCTTCC TTCGAATTAG AATGTGATGA TGAGGAAGGA AGCTGGGCTA TATACCCCCC TCCCATACAG AAGGATTCTT CGTATAATTA CACCGTCTCA TACGGGAATT ACACGGAGAA ATATTGCGAG TGGGGGGCAA TTTCGGTATC AATCGACGAA GATAATAATG GGAACGAGCC AAGAAGAATA CCACGCAGGG GGGTAATGGC GTGGTCCACC CCTGAACCAT CTTTTTCAGG GGATGATAGT CAAAGACAAG ACTTTAACAC TCCTTCGCTT GAAGAGCGAG GTTCCGATGC CCTGGAATCG GAAGAGAAGA AGGAAGAGGA CAACCTTCTT GATCTTGAGG AAGAGAATAT ACCCGACGTT GATGATGACG ATTTATGGAA GGGTATTTCC CGTGCCTCCG AAGCCGGGAC TGCCGAGGAT GATCGAGCGT CTACAAGCTC TCGTCTTCGC GGCAACCTCA AGCCAAAGGG GCTACCAAAA CCACAGCCTA CTCGAACCAT TACCGAGTTC AATCCTGGAC CTGATTTGAT AGAGGTGTGG AGGCCCGATC TAGCACCTGG ATACTCCAAA GCGGACGTCG CCGCAGCGAC AGTGCTCGCA GGAGGAAGTG TCCACGAGGG AAGAGATATG CTCGAGCGTA GAGAAGCAAA AGTAATGGAT AGTAGGAAGA AATGGGGAAT CCTCTCCTCA ACTTCCTCTC TTACTAGCGG AGCATTGAAG AAGCTCAGCG CACAATCGGA AAAGCTCGCC ACATTGACAA CTGGCGAGCG AGTGCAATAT CAACGACTTA AAAACTCAAT GGGTTCGACT GTTGCAGCTG AGTATCTCGA AAAGGTGCTT GCTGATAAAA CCTCCTAAAG AGTTCCTACT ACTCTGAAGT AGCGCGGCAC CGGAATACGC GGCGAAGCTC AATCCGGAAA CTCAAGAACG AGAGTATAAA CGTTAACGAC TCCGAAAGGA TAGGCAACGA ACGTTCCCAC GTAGTGGAAA CAGGGGGATT CCCCCTGGCG TTTCGGTGT

Products

ProductORF3
MAPTYFAFFL LVCLCSSVSS YQGTMFIPLE PANASYWLDS TDIAVPPSHP QVQLIYDCPP QKMLRDFSSR DITLELWERG YNETRQAFSE AMQNLQNLLM SGVRQFHTGL ESLLHVILQT AAYLWTSLIW ATACATWYLL SKYTIEMLTL ASLYISTVYM VKMAAWIFGD LPISLLKAGL SMVRGVSRAL WYKRSYNAEK SVEGYLSFKI PQNPPKNSVL QVQYKDGSHA GYATCVTLYN GTNGLLTAYH VAVPGSKVVS TRNGNKVPLS EFRSIMESEK RDLVLLAGPP NWEGTLACKA VQFQSAQNLC KSKASFYAYD GEGWISSNAE IVGIAEGKTH ASVLSNTDAG HSGTPYFNGR TVLGVHVGGA KDENFNYMAP IPPVYGLTSP SYEFETTAPQ GRLFTQEEIE ELIEEFSFSE ITSIMGHRRF HQMHDSQRHQ ADYEYESGNG QAAATAETTA PDATPAVGRT SGDAQSPAAP SSPRVNTYTP PNKRENRTAS AVSPTTSAST DTLSEIKQVI MDKIDVHSIE KQVVQALADK AMKKPRSRRR GKRSSKNSQP TSQVSSMPST PGNKAGKKPQ DSTKSDPSPS FTTLNKRKAR IGETKSANST QKWVISQRAS GGPSSAQKLN
ProductORF3b
DescriptionPlays role in mammalian development
Modifications1488..1488:ribosomal_frameshift
MAPTYFAFFL LVCLCSSVSS YQGTMFIPLE PANASYWLDS TDIAVPPSHP QVQLIYDCPP QKMLRDFSSR DITLELWERG YNETRQAFSE AMQNLQNLLM SGVRQFHTGL ESLLHVILQT AAYLWTSLIW ATACATWYLL SKYTIEMLTL ASLYISTVYM VKMAAWIFGD LPISLLKAGL SMVRGVSRAL WYKRSYNAEK SVEGYLSFKI PQNPPKNSVL QVQYKDGSHA GYATCVTLYN GTNGLLTAYH VAVPGSKVVS TRNGNKVPLS EFRSIMESEK RDLVLLAGPP NWEGTLACKA VQFQSAQNLC KSKASFYAYD GEGWISSNAE IVGIAEGKTH ASVLSNTDAG HSGTPYFNGR TVLGVHVGGA KDENFNYMAP IPPVYGLTSP SYEFETTAPQ GRLFTQEEIE ELIEEFSFSE ITSIMGHRRF HQMHDSQRHQ ADYEYESGNR AGGGDRRNNR TRCHPRGWAH KWRRTVSCCS LFPEGQHVHT SEQTGKPHCF CSIPHHQCFY RHFVGNQTGN NGQNRCPFNR EASGPSLGGQ SHEETEVAQT RQEKFEELAT DFSSFFDAQY TWEQGGEEAP GFDKVGSLPQ FYHAKQKKSS NWGDKICKQH PEMGDLTKGF GWPQFGAKAE LKSLRLQAAR WLERAQSVKI PSSEEREHVI ERCCRAYQAA KTNGPMATRG DRLSWDNFLQ DFKQAVLSLE MDAGIGVPYI AYGKPTHRGW VEDKKLLPIL ARLTFNRLQK MLEVRYVDLS PAELVRRGLC DPIRVFVKGE PHKQAKLDEG RYRLIMSVSL VDQLVARVLF QNQNKREIAL WRVVPSKPGF GLSTDEQVAE FMQILSAQVG LTPSDLITEW RAHMIATDCS GFDWSVSDWL LEDDMEVRNR LTLDLNETTR RLRSWLYCIS NSVLCLSDGT LLAQRVPGVQ KSGSYNTSSS NSRIRVMAAY HCGAEWAMAM GDDALESACS NLERYKSLGF KVEESSKLEF CSHIFEKEDL AIPVNKAKML YKLIHGYEPE CGNVEVLINY LAACFSILNE LRSDPSLVET LHQWLVAPVQ PQKI

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