Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200015"

Accession numberr200015 [export]
Locus namegag-pol
Recode1 namepol_m_vir_fiv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismFeline immunodeficiency virus [details]
AcronymFIV

Sequence

GenBank IDsM25381.1
Sequencess-RNA of 4888 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,529)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GTTGGCGCCC GAACAGGGAC TTGATTGAGA GTGATTGAGG AAGTGAAGCT AGAGCAATAG AAAGCTGTTA AGCAGAACTC CTGCTGACCT AAATAGGGAA GCAGTAGCAG ACGCTGCTAA CAGTGAGTAT CTCTAGTGAA GCGGACTCGA GCTCATAATC AAGTCATTGT TTAAAGGCCC AGATAAATTA CATCTGGTGA CTCTTCGCGG ACCTTCAAGC CAGGAGATTC GCCGAGGGAC AGTCAACAAG GTAGGAGAGA TTCTACAGCA ACATGGGGAA TGGACAGGGG CGAGATTGGA AAATGGCCAT TAAGAGATGT AGTAATGTTG CTGTAGGAGT AGGGGGGAAG AGTAAAAAAT TTGGAGAAGG GAATTTCAGA TGGGCCATTA GAATGGCTAA TGTATCTACA GGACGAGAAC CTGGTGATAT ACCAGAGACT TTAGATCAAC TAAGGTTGGT TATTTGCGAT TTACAAGAAA GAAGAGAAAA ATTTGGATCT AGCAAAGAAA TTGATATGGC AATTGTGACA TTAAAAGTCT TTGCGGTAGC AGGACTTTTA AATATGACGG TGTCTACTGC TGCTGCAGCT GAAAATATGT ATTCTCAAAT GGGATTAGAC ACTAGGCCAT CTATGAAAGA AGCAGGTGGA AAAGAGGAAG GCCCTCCACA GGCATATCCT ATTCAAACAG TAAATGGAGT ACCACAATAT GTAGCACTTG ACCCAAAAAT GGTGTCCATT TTTATGGAAA AGGCAAGAGA AGGACTAGGA GGTGAGGAAG TTCAACTATG GTTTACTGCC TTCTCTGCAA ATTTAACACC TACTGACATG GCCACATTAA TAATGGCCGC ACCAGGGTGC GCTGCAGATA AAGAAATATT GGATGAAAGC TTAAAGCAAC TGACAGCAGA ATATGATCGC ACACATCCCC CTGATGCTCC CAGACCATTA CCCTATTTTA CTGCAGCAGA AATTATGGGT ATAGGATTAA CTCAAGAACA ACAAGCAGAA GCAAGATTTG CACCAGCTAG GATGCAGTGT AGAGCATGGT ATCTCGAGGC ATTAGGAAAA TTGGCTGCCA TAAAAGCTAA GTCTCCTCGA GCTGTGCAGT TAAGACAAGG AGCTAAGGAA GATTATTCAT CCTTTATAGA CAGATTGTTT GCCCAAATAG ATCAAGAACA AAATACAGCT GAAGTTAAGT TATATTTAAA ACAGTCATTG AGCATAGCTA ATGCTAATGC AGACTGTAAA AAGGCAATGA GCCACCTTAA GCCAGAAAGT ACCCTAGAAG AAAAGTTGAG AGCTTGTCAA GAAATAGGCT CACCAGGATA TAAAATGCAA CTCTTGGCAG AAGCTCTTAC AAAAGTTCAA GTAGTGCAAT CAAAAGGATC AGGACCAGTG TGTTTTAATT GTAAAAAACC AGGACATCTA GCAAGACAAT GTAGAGAAGT GAAAAAATGT AATAAATGTG GAAAACCTGG TCATGTAGCT GCCAAATGTT GGCAAGGAAA TAGAAAGAAT TCGGGAAACT GGAAGGCGGG GCGAGCTGCA GCCCCAGTGA ATCAAATGCA GCAAGCAGTA ATGCCATCTG CACCTCCAAT GGAGGAGAAA CTATTGGATT TATAAATTAT AATAAAGTAG GTACTACTAC AACATTAGAA AAGAGGCCAG AAATACTCAT ATTTGTAAAT GGATATCCTA TAAAATTTTT ATTAGACACA GGAGCAGATA TAACAATTTT AAATAGGAGA GATTTTCAAG TAAAAAATTC TATAGAAAAT GGAAGGCAAA ATATGATTGG AGTAGGAGGA GGAAAGAGAG GAACAAATTA TATTAATGTA CATTTAGAGA TTAGAGATGA AAATTATAAG ACACAATGTA TATTTGGTAA TGTTTGTGTC TTAGAAGATA ACTCATTAAT ACAACCATTA TTAGGGAGAG ATAATATGAT TAAATTCAAT ATTAGGTTAG TAATGGCTCA AATTTCTGAT AAGATTCCAG TAGTAAAAGT AAAAATGAAG GATCCTAATA AAGGACCTCA AATAAAACAA TGGCCATTAA CAAATGAAAA AATTGAAGCC TTAACAGAAA TAGTAGAAAG ACTAGAAAGA GAAGGGAAAG TAAAAAGAGC AGATCCAAAT AATCCATGGA ATACACCAGT ATTTGCTATA AAAAAGAAAA GTGGAAAATG GAGAATGCTC ATAGATTTTA GAGAATTAAA CAAACTAACT GAGAAAGGAG CAGAGGTCCA GTTGGGACTA CCTCATCCTG CTGGTTTACA AATAAAAAAA CAAGTAACAG TATTAGATAT AGGGGATGCA TATTTCACCA TTCCTCTTGA TCCAGATTAT GCTCCTTATA CAGCATTTAC TTTACCTAGA AAAAATAATG CGGGACCAGG AAGGAGATTT GTGTGGTGTA GTCTACCACA AGGCTGGATT TTAAGTCCAT TGATATATCA AAGTACATTA GATAATATAA TACAACCTTT TATTAGACAA AATCCTCAAT TAGATATTTA CCAATATATG GATGACATTT ATATAGGATC AAATTTAAGT AAAAAGGAGC ATAAAGAAAA GGTAGAAGAA TTAAGAAAAT TACTATTATG GTGGGGATTT GAAACTCCAG AAGATAAATT ACAGGAAGAA CCCCCATATA CATGGATGGG TTATGAATTA CATCCATTAA CATGGACAAT ACAACAGAAA CAGTTAGACA TTCCAGAACA GCCCACTCTA AATGAGTTGC AAAAATTAGC AGGAAAAATT AATTGGGCTA GCCAAGCTAT TCCAGACTTG AGTATAAAAG CATTAACTAA CATGATGAGA GGAAATCAAA ACCTAAATTC AACAAGACAA TGGACTAAAG AAGCTCGACT GGAAGTACAA AAGGCAAAAA AGGCTATAGA AGAACAAGTA CAACTAGGAT ACTATGACCC CAGTAAGGAG TTATATGCTA AATTAAGTTT GGTGGGACCA CATCAAATAA GTTATCAAGT ATATCAGAAG GATCCAGAAA AGATACTATG GTATGGAAAA ATGAGTAGAC AAAAGAAAAA GGCAGAAAAT ACATGTGATA TAGCCTTAAG AGCATGCTAT AAGATAAGAG AAGAGTCTAT TATAAGAATA GGAAAAGAAC CAAGATATGA AATACCTACT TCTAGAGAAG CCTGGGAATC AAATTTAATT AATTCACCAT ATCTTAAGGC CCCACCTCCT GAGGTAGAAT ATATCCATGC TGCTTTGAAT ATAAAGAGAG CGTTAAGTAT GATAAAAGAT GCTCCAATAC CAGGAGCAGA AACATGGTAT ATAGATGGAG GTAGAAAGCT AGGAAAAGCA GCAAAAGCAG CCTATTGGAC AGATACAGGA AAGTGGCAAG TGATGGAATT AGAAGGCAGT AATCAGAAGG CAGAAATACA AGCATTATTA TTGGCATTAA AAGCAGGATC AGAGGAGATG AATATTATAA CAGATTCACA ATATGTTATA AATATTATTC TTCAACAACC AGATATGATG GAGGGAATCT GGCAAGAAGT TTTAGAAGAA TTGGAGAAGA AAACAGCAAT ATTTATAGAT TGGGTCCCAG GACATAAAGG TATTCCAGGA AATGAGGAAG TAGATAAGCT TTGTCAAACA ATGATGATAA TAGAAGGGGA TGGGATATTA GATAAAAGGT CAGAAGATGC AGGATATGAT TTATTAGCTG CAAAAGAAAT ACATTTATTG CCAGGAGAGG TAAAAGTAAT ACCAACAGGG GTAAAGCTAA TGTTGCCTAA AGGATATTGG GGATTAATAA TAGGAAAAAG CTCGATAGGG AGTAAAGGAT TGGATGTATT AGGAGGGGTA ATAGACGAAG GATATCGAGG TGAAATTGGA GTAATAATGA TTAATGTATC AAGAAAATCA ATCACCTTAA TGGAACGACA AAAGATAGCA CAATTAATAA TATTGCCTTG TAAACATGAA GTATTAGAAC AAGGAAAAGT AGTAATGGAT TCAGAGAGAG GAGACAATGG TTATGGGTCA ACAGGAGTAT TCTCCTCTTG GGTTGACAGA ATTGAGGAAG CAGAAATAAA TCATGAAAAA TTTCACTCAG ATCCACAGTA CTTAAGGACT GAATTTAATT TACCTAAAAT GGTAGCAGAA GAGATAAGAC GAAAATGCCC AGTATGCAGA ATCAGAGGAG AACAAGTGGG AGGACAATTG AAAATAGGGC CTGGTATCTG GCAAATGGAT TGCACACACT TTGATGGCAA AATAATTCTT GTGGGTATAC ATGTGGAATC AGGATATATA TGGGCACAAA TAATTTCTCA AGAAACTGCT GACTGTACAG TTAAAGCTGT CTTACAATTG TTGAGTGCTC ATAATGTTAC TGAATTACAA ACAGATAATG GACCAAATTT TAAAAATCAA AAGATGGAAG GAGTACTCAA TTACATGGGT GTGAAACATA AGTTTGGTAT CCCAGGGAAC CCACAGTCAC AAGCATTAGT TGAAAATGTA AATCATACAT TAAAAGTTTG GATTCGGAAA TTTTTGCCTG AAACAACCTC CTTGGATAAT GCCTTATCTC TCGCTGTACA TAGTCTCAAT TTTAAAAGAA GAGGTAGGAT AGGAGGGATG GCCCCTTATG AATTATTAGC ACAACAAGAA TCCTTAAGAA TACAAGATTA TTTTTCTGCA ATACCACAAA AATTGCAAGC ACAGTGGATT TATTATAAAG ATCAAAAAGA TAAGAAATGG AAAGGACCAA TGAGAGTAGA ATACTGGGGA CAGGGATCAG TATTATTAAA GGATGAAGAG AAGGGATATT TTCTTATACC TAGGAGACAC ATAAGGAGAG TTCCAGAACC CTGCGCTCTT CCTGAAGGGG ATGAGTGA

Products

Productgag
Descriptiongag capsid polyprotein
MGNGQGRDWK MAIKRCSNVA VGVGGKSKKF GEGNFRWAIR MANVSTGREP GDIPETLDQL RLVICDLQER REKFGSSKEI DMAIVTLKVF AVAGLLNMTV STAAAAENMY SQMGLDTRPS MKEAGGKEEG PPQAYPIQTV NGVPQYVALD PKMVSIFMEK AREGLGGEEV QLWFTAFSAN LTPTDMATLI MAAPGCAADK EILDESLKQL TAEYDRTHPP DAPRPLPYFT AAEIMGIGLT QEQQAEARFA PARMQCRAWY LEALGKLAAI KAKSPRAVQL RQGAKEDYSS FIDRLFAQID QEQNTAEVKL YLKQSLSIAN ANADCKKAMS HLKPESTLEE KLRACQEIGS PGYKMQLLAE ALTKVQVVQS KGSGPVCFNC KKPGHLARQC REVKKCNKCG KPGHVAAKCW QGNRKNSGNW KAGRAAAPVN QMQQAVMPSA PPMEEKLLDL
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications1529..1529:ribosomal_frameshift
MGNGQGRDWK MAIKRCSNVA VGVGGKSKKF GEGNFRWAIR MANVSTGREP GDIPETLDQL RLVICDLQER REKFGSSKEI DMAIVTLKVF AVAGLLNMTV STAAAAENMY SQMGLDTRPS MKEAGGKEEG PPQAYPIQTV NGVPQYVALD PKMVSIFMEK AREGLGGEEV QLWFTAFSAN LTPTDMATLI MAAPGCAADK EILDESLKQL TAEYDRTHPP DAPRPLPYFT AAEIMGIGLT QEQQAEARFA PARMQCRAWY LEALGKLAAI KAKSPRAVQL RQGAKEDYSS FIDRLFAQID QEQNTAEVKL YLKQSLSIAN ANADCKKAMS HLKPESTLEE KLRACQEIGS PGYKMQLLAE ALTKVQVVQS KGSGPVCFNC KKPGHLARQC REVKKCNKCG KPGHVAAKCW QGNRKNSGNL EGGASCSPSE SNAASSNAIC TSNGGETIGF INYNKVGTTT TLEKRPEILI FVNGYPIKFL LDTGADITIL NRRDFQVKNS IENGRQNMIG VGGGKRGTNY INVHLEIRDE NYKTQCIFGN VCVLEDNSLI QPLLGRDNMI KFNIRLVMAQ ISDKIPVVKV KMKDPNKGPQ IKQWPLTNEK IEALTEIVER LEREGKVKRA DPNNPWNTPV FAIKKKSGKW RMLIDFRELN KLTEKGAEVQ LGLPHPAGLQ IKKQVTVLDI GDAYFTIPLD PDYAPYTAFT LPRKNNAGPG RRFVWCSLPQ GWILSPLIYQ STLDNIIQPF IRQNPQLDIY QYMDDIYIGS NLSKKEHKEK VEELRKLLLW WGFETPEDKL QEEPPYTWMG YELHPLTWTI QQKQLDIPEQ PTLNELQKLA GKINWASQAI PDLSIKALTN MMRGNQNLNS TRQWTKEARL EVQKAKKAIE EQVQLGYYDP SKELYAKLSL VGPHQISYQV YQKDPEKILW YGKMSRQKKK AENTCDIALR ACYKIREESI IRIGKEPRYE IPTSREAWES NLINSPYLKA PPPEVEYIHA ALNIKRALSM IKDAPIPGAE TWYIDGGRKL GKAAKAAYWT DTGKWQVMEL EGSNQKAEIQ ALLLALKAGS EEMNIITDSQ YVINIILQQP DMMEGIWQEV LEELEKKTAI FIDWVPGHKG IPGNEEVDKL CQTMMIIEGD GILDKRSEDA GYDLLAAKEI HLLPGEVKVI PTGVKLMLPK GYWGLIIGKS SIGSKGLDVL GGVIDEGYRG EIGVIMINVS RKSITLMERQ KIAQLIILPC KHEVLEQGKV VMDSERGDNG YGSTGVFSSW VDRIEEAEIN HEKFHSDPQY LRTEFNLPKM VAEEIRRKCP VCRIRGEQVG GQLKIGPGIW QMDCTHFDGK IILVGIHVES GYIWAQIISQ ETADCTVKAV LQLLSAHNVT ELQTDNGPNF KNQKMEGVLN YMGVKHKFGI PGNPQSQALV ENVNHTLKVW IRKFLPETTS LDNALSLAVH SLNFKRRGRI GGMAPYELLA QQESLRIQDY FSAIPQKLQA QWIYYKDQKD KKWKGPMRVE YWGQGSVLLK DEEKGYFLIP RRHIRRVPEP CALPEGDE

Publication