Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200018"

Accession numberr200018 [export]
Locus nameORF 1b
Recode1 namepol_r_vir_carrot
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCarrot red leaf luteovirus associated RNA [details]

Sequence

GenBank IDsAF020616.1
SequenceRNA of 2834 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 709)
Descriptionproduction of fusion protein and set the ratio between two protein products
GGGATTTAGC ATTCACTAGC GAACATGACG AATCTTGACA TCGAGTCGCT AGTAGAAACC CAGCCGGCAG TATCCAAATT AGTTGGATTA CTGCCAAAAA TTAGTTCTAA AATAATAGAC GCGGCCAAAG TGCCAGCGAC CTGCGGCCTC ATAGTTGCCG CGGGATTAGG ATTGTACGCA TACCGAAAGG TGTGCATCAA CAGATTAGAA TTAGTTAGGG AAAACACTAC CCCCCGACCC GCGGACTGTA TAGAGGACGT GCTGGAGGTC GAGGAGGATG CCGCAGCGGA ATTGACGCTA GCGAAGATCG CCAAAGAGGC GGCGATGGAG GCAGCTCTTA ACCCGGGCGA AATTACAGAA AGGGTTAGAG ACGCCGCAAA AATAAACGCC CAACCCTCAG CAAACCCTCT AACCAAGAGG AAGACGAGAG TCAGGCCTAA CAAGACGGGC CAATTCATCA GGGTACTGAG GGCAGAAATA AAAGCCCAGA TGGGAACCCC TACCATAACG GCGGCTAACG AGGCGGTGAT AAGGCACATG ATAAGCAAAT TCTGTGCATC ACACAACATA CGGACGACCT CGTACGCCCA CCTAATCTCT AGGGTAGTGA GGGAGGTTAT GACCCCTTAC CCAGGCGATG CTGAAGAGGT GGAGCGCGCC AACTCGGTTG TGAATCGGAT TCACAACTGG TTGGTGCAGT ACCGTAAATA GGGGGGCCTT GAGTTGGCGC GCGGGTTCAC ACACGATGCA GTATGTACAG ATGTGCCCGG CCTGGACGCC ACCAACCTGG GTGATTCCCG CCCACTAACA GATACTAATA TTAGGAGAGT AGTCGGTCCG TTTAGTTCGG ATTACGACAT AGTATTTTAT ACTAACTCTA GGAATAACTT GATGCGAGGC TTGGTAAACA GGGTGCTCAC TTACAAGGGT GGACCTGTTT TAGAACCATC ACCAGGCGCA TGGAAAAGTC TAAGAGGGTT AGCCACATCC CTCGGTAACA GATGTTTAAC CACCCCTTTG AGCCCGGAAG AATTTCTGGC GTGCTATGTG GGTCGTAAGA GAACTATCTA TACCAAGGCG ATGGAGAGCT TCAAGACTAA ACCATGGGAC GCACGCAAGG ACATGATCGT CAAGGCCTTC ATAAAGAAAG AGAAGGACAA GTTGGTAGAC GAATCGTGCG ATCCCCGCAT CATCCAACCA CGGACTCCAA GATTCGTAAC GAGATTCGGA CGTTACGTTA GAGCCATAGA GAAACGTCTA TACATTGAAT GGACCAAGAG CTTCTCGAGT TTCACCGTTA CAACTACTCC AGTCTGTTTG AAAGGAATGA ACTATAGAAC GAGGGCAAGA GCCTTGCTGG AGAAATGGCA GAGTTTCGAC TCGCCGGTTG CTGTTTGTTT AGACGCATCC CGGTTTGACC TCCACGTATC GGTAGACGCA CTCAAATTTA CGGATCAGAT CTACTTGTCG GCCTTCACAG GCATCGACCG ATCCGAGCTC AAGGAAATCC TACGAAATAG ACATAAGACC ACCGGATTTG CAACGTGCAA GGAGGGCACA TTCCACTACG AGAAAGTGGG AGGCAGATGC TCGGGAGATA GTGATACCTC CTTAGGAAAC GTGAGTATCA TGCTAGCGAT CACGCGGGTG ATTTGTGAGG AGCTAAAAGG CATACACATT GAAGTAGCCA ATGATGGAGA TGATCAGGTG CTGATGGTCG AGACAAACCA ACTCGACAAC CTGATCAAGG AGCTTAGCCC CACATTTGCA CGATTTGGTT TTCGTGTAAA AGTTGAAGAT CCAGTCTGGG AATTCGAAAG AATAGATTTT TGCCAAACCA GACCGATCTT CCTGTCGCCC GGCGAACCTT TAATGTGCCG GTACCCAATG CAATCTATGT CAAAAGACGT TGCATCCTTC CTCAATATAG AAAGATCAGA GGGATGGAAA TACATGCTCA GAGCTATAGG AGCATGTGGG TCTTCTAGTT TCTCTCAAGT TCCAGTACTT GGGAAGTTTT ATAGTGCGCT CAGTTCCACA TCAAATAAAG ATGAATCAAG ATGGTGGAAA CGCACGGGAG TTGATTTGGG ATTTCAGCAG CTCACAAGTG GTGTGGGCGA TATTCCCTAC GACGAGGTCA CGGCACGAAG CTCCTTCTAT AAGGCCTTCG GAATCCTCCC AGACACCCAA GTAGCACTCG AAAGCAAAAT AGAAAACTGG AATATGAGCT CCGTACCACC AATTGAGCAA GTCCACAAAT TCTCGAGTGA GTTTCCCGTG GTTGACGGAT GGGCCTAACA TAGGGTTAAA GTTAGGTGTT AGTAGTTAGG GCCCCTTCCT CGCTGGCTGG GTGAGAAAGG GGCCACCGCA GACTGGTTGG ATAGGTTTGG GAACATAGAT CCGAACTCCA ACCAACGGGT AGGTCGAACC CGCGGAGTCG AGAATGATTA CCATAATTGG TAGGTGAGGT CACGCCGTTT GGTCAAGTCA CCCGAGCTTT CGGTAGGGAC TCTAGTTGTT GAGTGTTATT ATGGCATGAC CCGCTAGACG ACCCACACTT GGAGAAGCGG CTTGCCCACG CTCCAACATT CCATAGATAG ATTGAACGAC GAAATGTCAT TGTCTTGCCG TCAGAGGCGT TCCCCTCTCC AAGGCTGACC CGAGCTGCGC CATGCTTGGG GTCTATGGAA TAGTTGATGG TGGGAACTAC AGGGGAGGGT ATGCCCCAAG CTATTACCCA AGTGTGAAAC TCCCGCACGA CACCACTCCG AAGCCGGAGT GGGGGCGTTA GTCGTGTGGC AACTTATCCT TTCGGATTAC CAGGAACCCC GCCC

Products

ProductORF1
MTNLDIESLV ETQPAVSKLV GLLPKISSKI IDAAKVPATC GLIVAAGLGL YAYRKVCINR LELVRENTTP RPADCIEDVL EVEEDAAAEL TLAKIAKEAA MEAALNPGEI TERVRDAAKI NAQPSANPLT KRKTRVRPNK TGQFIRVLRA EIKAQMGTPT ITAANEAVIR HMISKFCASH NIRTTSYAHL ISRVVREVMT PYPGDAEEVE RANSVVNRIH NWLVQYRK
ProductORF1b
DescriptionRNA-dependent RNA polymerase
Modifications709..711,aa:OTHER
MTNLDIESLV ETQPAVSKLV GLLPKISSKI IDAAKVPATC GLIVAAGLGL YAYRKVCINR LELVRENTTP RPADCIEDVL EVEEDAAAEL TLAKIAKEAA MEAALNPGEI TERVRDAAKI NAQPSANPLT KRKTRVRPNK TGQFIRVLRA EIKAQMGTPT ITAANEAVIR HMISKFCASH NIRTTSYAHL ISRVVREVMT PYPGDAEEVE RANSVVNRIH NWLVQYRKQG GLELARGFTH DAVCTDVPGL DATNLGDSRP LTDTNIRRVV GPFSSDYDIV FYTNSRNNLM RGLVNRVLTY KGGPVLEPSP GAWKSLRGLA TSLGNRCLTT PLSPEEFLAC YVGRKRTIYT KAMESFKTKP WDARKDMIVK AFIKKEKDKL VDESCDPRII QPRTPRFVTR FGRYVRAIEK RLYIEWTKSF SSFTVTTTPV CLKGMNYRTR ARALLEKWQS FDSPVAVCLD ASRFDLHVSV DALKFTDQIY LSAFTGIDRS ELKEILRNRH KTTGFATCKE GTFHYEKVGG RCSGDSDTSL GNVSIMLAIT RVICEELKGI HIEVANDGDD QVLMVETNQL DNLIKELSPT FARFGFRVKV EDPVWEFERI DFCQTRPIFL SPGEPLMCRY PMQSMSKDVA SFLNIERSEG WKYMLRAIGA CGSSSFSQVP VLGKFYSALS STSNKDESRW WKRTGVDLGF QQLTSGVGDI PYDEVTARSS FYKAFGILPD TQVALESKIE NWNMSSVPPI EQVHKFSSEF PVVDGW

Publication