Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200025"

Accession numberr200025 [export]
Locus nameselN
Recode1 nameselN_s_euk_drer
Descriptionfunction unknown
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismDanio rerio [details]

Sequence

GenBank IDsAY221262.1,NM_001004294.1
SequencemRNA of 2049 nucleotides [sequence]

Recoding event

Event typeSelenocysteine (positions: 271, 1201)
Descriptionselenocysteine incorporation. incomplete sequence; SECIS can't be found
TCACGTTTCA CACAGATCTC CAGTTTATTC ATCATTGCTG CTATTCCTGT CATCAGCTTT TGCATCAAAT ATTACCTGGA CATCCAGTTT GTGAAACGAC ACGAGGCAGG ACTGAAGGCA CTGGGAGCAG ACGGACTGTT TTTCTTCTCA TCCTTGGATA CTGATCATGA CCTTTATCTC AGTCCAGAGG AATTCAAACC TATCGCAGAA AAACTCACAG GTGTGGCCCC TCCCCCAGAG TATGAAGAGG AGATTCCACA TGACCCAAAT TGAGAGACGC TGACCCTGCA TGCTAAAATG CAGCCACTGC TGCTGGAAAG CATGACGAAG AGCAAAGATG GCTTTCTAGG GGTCTCCCAC AGCTCTCTTA GTGGCCTGCG CTCTTGGAAA CGTCCAGCTA TTTCTTCATC CACGTTTTAT GCAAGTCAGT TCAAGGTCTT CCTGCCGCCC AGTGGTAAAT CGGCCGTGGG TGACACTTGG TGGATCATTC CCAGTGAACT GAACATCTTC ACTGGCTACC TACCCAACAA CCGTTTTCAT CCTCCCACAC CGCGAGGCAA GGAGGTGCTG ATCCACTCTC TGCTCAGCAT GTTTCACCCA CGGCCTTTTG TAAAATCTCG CTTCGCTCCA CAGGGAGCTG TGGCTTGTAT ACGGGCTACT AGTGACTTTT ATTATGACAT TGTTTTTAGA ATCCATGCTG AGTTCCAGCT AAATGATGTT CCAGATTTCC CATTTTGGTT CACTCCTGGG CAGTTTGCCG GTCACATTAT TCTCTCTAAA GATGCTTCCC ATGTCCGAGA TTTTCACATC TACGTCCCAA ATGACAAAAC TCTGAATGTG GACATGGAGT GGCTGTACGG GGCCAGCGAG ACCAGTAACA TGGAAGTGGA TATTGGATAC CTTCCTCAGA TGGAGCTTGG TGCTGAAGGA CCCTCCACTC CCTCAGTGAT CTACGATGAG CAGGGGAACA TGATCGACAG TCGAGGAGAA GGAGGTGAAC CCATTCAGTT TGTGTTTGAG GAGATAGTCT GGAGTGAAGA GCTGAGAAGA GAAGAAGCAT CCAGACGTCT GGAAGTCACA ATGTACCCGT TTAAAAAGGT GCCATATTTA CCATTCAGTG AGGCCTTCAG CAGAGCTTCA GCTGAAAARA AGCTGGTTCA CTCCATCCTG CTCTGGGGAG CGCTGGATGA CCAGTCATGC TGAGGTTCAG GGCGGACTCT TCGGGAGACA GTTCTCGAGA GTTCGCCCGT TCTGGCCTTA CTCAACCAGA GCTTCATCAG CAGCTGGTCT CTTGTCAAAG AGCTGGAGGA TCTGCAGGGT GACGTGAAAA ATCTGGAATT GAGTGAAAAG GCTCGTTTAC ATTTGGAGAA GTATACTTTT CCAGTGCAGA TGATGGTGGT GCTGCCCAAT GGCACTGTAG TCCATCATAT CAATGCCAAT AATTTCCTGG ATCAAACATC TATGAAACCA GAAGATGAAG GGCCAGGTCT TAGTTTCTCA GCAGGTTTTG AGGATCCCTC AACTTCCACA TACATCCGCT TCCTGCAGGA AGGACTTGAA AAGGCCAAAC CTTACTTGGA ATCATAAAAA CTGATTTAAG ACGCTCTCCA GAAACGTCAG AGAGAAGTGA AGGGGGGATA TGAGGGAGAT AAAAAAAGGA AATGCTGATC TCAGCTCAGC TCCCACTTGT CTGCTTTGAT GAACAGAATG CAGACAATTT CTTCATTCAG AAGGCAGCTG TTGACCACTG CTTCATGTAC ATGCTCCTTA GTGCAACACA GTTAATGGCA AAATGCACAA TATAACATTT TATTCCTAGG GTAGCAAGAT TGTGCTTGGT CACCTCAATG AAAGCTGAAA GATGTTAAAG AGACAGTTCA CTTAAAAATA AAATATTGTT TACTCACCAT TAATTATTTT TTCCTTGAAA CATAGGATTT TTTTAATAAA CAGTCACTCC ATTTACTTAA TGATTATATA GTTTTAAGCT AATGGGAACA TTTACTCACC ACCAAACTGA GATGAATGTG GGTTATTGCG GACGCGTGG

Product

ProductselN
Descriptionselenoprotein N; function unknown
Modifications271..273,aa:Sec|1201..1203,aa:Sec
SRFTQISSLF IIAAIPVISF CIKYYLDIQF VKRHEAGLKA LGADGLFFFS SLDTDHDLYL SPEEFKPIAE KLTGVAPPPE YEEEIPHDPN UETLTLHAKM QPLLLESMTK SKDGFLGVSH SSLSGLRSWK RPAISSSTFY ASQFKVFLPP SGKSAVGDTW WIIPSELNIF TGYLPNNRFH PPTPRGKEVL IHSLLSMFHP RPFVKSRFAP QGAVACIRAT SDFYYDIVFR IHAEFQLNDV PDFPFWFTPG QFAGHIILSK DASHVRDFHI YVPNDKTLNV DMEWLYGASE TSNMEVDIGY LPQMELGAEG PSTPSVIYDE QGNMIDSRGE GGEPIQFVFE EIVWSEELRR EEASRRLEVT MYPFKKVPYL PFSEAFSRAS AEXKLVHSIL LWGALDDQSC UGSGRTLRET VLESSPVLAL LNQSFISSWS LVKELEDLQG DVKNLELSEK ARLHLEKYTF PVQMMVVLPN GTVVHHINAN NFLDQTSMKP EDEGPGLSFS AGFEDPSTST YIRFLQEGLE KAKPYLES

Publication