Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200029"

Accession numberr200029 [export]
Locus namenull
Recode1 namefdh_s_pro_dhaf
Descriptionformate dehydrogenase
Recode statusProvisional

Organism

Genomic classBacteria (Chromosome)
OrganismDesulfitobacterium hafniense [details]

Sequence

GenBank IDsNZ_AAAW02000126.1
SequenceDNA of 2760 nucleotides [sequence]
OrganisationSECIS (1) [see structure]

Recoding event

Event typeSelenocysteine (position: 1135)
DescriptionSelenocysteine incorporation at UGA codon.
ATGTATCCGC TGTGGAAGTT GTATGGATTC CTGCAAATTT GGCGCGGTTA TCCGGGCCTA GAAGGAGGAG TGGATTTAGT GGAATGGCTT AACTTAACTA TTGACGAAAA AGAAGTTGTC GTACCCAAAG GGAGCACGGT CTTGGAAGCA TGCCGTATGT ACGATATTCC GATTCCAACC CTTTGCCAGG ATCCGGAACT CACCAATGCC GGAGCTTGCC GTCTCTGTAT TGTTGAGATC GCAGGTATGC GCAATCTGCC GCCTTCCTGC GTTACCCAGG TGACCCAGGG GATGGTTGTG AAGACCCAGA CACCAAAGGT GCGCAAGTCC CGCAAGGTGA TTCTGGAGCT CTTAGTGGCG AACCACCCTT TGGATTGCAT GACCTGTCAG AAAATGGGAG ACTGTGCGCT GGCTCAGTAT GCCTATGAAT ATGGTGTGAC TGGCGAAGAT TACCGGGGAG AACGGCGTGA GCTGCCCCTT GATGACAGCA ACCCCTTTAT TCTCAGAGAT CCGAATAAAT GCATTCTCTG CGGCAAATGT GTGCGGGCCT GTGAAGAGAT TCAGGGGCGA AGTGTGTTGG ATTTCTTTAA ACGGGGGTTT GACTCCCAGG TGGGACCGGC CTTTGATGTT CCTTATAGTG AATCGGAATG CGTTTTCTGC GGTTCCTGTG TTTCGGTTTG CCCAGTGGGA GCCTTGGTGG AGAAAAAGAT GGTCGGCCAG GCTCGGGCCT GGAACATCGA AAAAGTACAG ACCACCTGCC CTTTCTGCGG CACAGGCTGT AATTTTGACC TGAATGTCAG CAATGGCAAA GTGATCGGGG TAACCTCCAA TCCGGAGTCA CCGGTGAACG GTAAAGCCCT TTGTGTCAAG GGCCGTTTTG GCATGGATTT GATCCACAGC CCTCAGCGCC TGACCACTCC CTTGATTAAA AAGGATGGAG AATTCGTCCC GGCAGGCTGG GATGAAGCCC TTGATTTAAT TGCCGCAAAG TTCTCCCAGA TTAAAGAGGA TTATGGGCCA GATTCTTTTG CAGCACTCAG TTCAGCCCGC TGTACCAATG AAGAAAATTA CCTGATGCAA AAATTTATGC GCGCAGTGAT CGGAACCAAT AATGTTGATC ACTGCGCCCG TACCTGACAC GCTCCCACTG TGGCAGGTCT TGCCACTTCA TTTGGTTCAG GAGCGATGAC TAATTCTATC AACGAAATCC CTAATGCCGA AGTCATGTTT GTGATTGGTT CCAATACTAC AGAAGCTCAT CCGATTATCG GCACCAAGAT GAAGCAGGCT CTGGCCCGGG GAGCCAAGCT TATTGTAGCT GATCCGCGGG AGATCGAACT GGCCAGGGAT GCTCATATCT GGATGAGATT GAAACCAGGT ACGGATATTG CCCTGATCAA CGGGATCATG AACATCATTG TCGAGAACGG CTGGGAGGAT CGCGCTTTTA TTGAGGAGCG AACCGAAGGC TATCAAGAAC TCAGGGAAAA TCTCAAGAAA TTCCCGCCGG AAGAAGTCAG CAAAATCACT GGAGTTCCCG TGGAGCTGAT GGCAGAAGCT GCCCGTCTCT ACACCAGTGT GGAGCGAGCT CAGATTTTCT ACACCCTGGG AATCACGGAA CATGTTTGTG GTACGGATAA TGTTATGTCC CTGGCCAATC TGGCCATGCT GACCGGAAAT ATCGGCAAAG AAAGCTCCGG GGTCAACCCG CTGCGGGGGC AGAACAATGT GCAGGGAGCC TGCGACATGG GAGCTCTGCC CAATGTTTAT CCCGGCTATC AGAGTGTTAC CAACCCAGAG GCACGGGCTA AGTTTGAAGA GGCCTGGGGA GTTTCCCTTA ATCCCAATCA GGGCTTCATG ATTCCGGATA TGTTTGATTC AGCAGTCAAG AAGGAATTGC GGGCCATGTA TATCATGGGC GAAGATCCTG TGCTGACCGA TGCCGACGCC AATCATGTGC GTAAAGGCCT GAAGGCCTTG GACTTTCTGG TTGTTCAGAA CATCTTTATG TCTGAGACTG CCGAATTGGC CGATGTTATT TTACCGGGGG CCAGCTTTGC GGAAAAGGAC GGTACTTTCA CCAATACCGA GCGTCGGGTG CAACGGGTTA ACCGGGCGAT TAAGCCTATC GCCAATACGA AGGCGGACTG GGAAATCATC TGCGAGCTTT CCAACCGGAT GGGGTACCCG ATGGCTTACC CATCGCCTGC AGAGATCATG CTGGAGGTTG CCTCCCTGGC ACCGCAGTTT GCCGGAGTTA CCTATGAGCG TCTGGGCAAA AAAGGCCTGC AATGGCCGGT TCCTCATGCC GAACATCCGG GCACGAAGTT CCTGCACCAA GGGAAATTTA CCCGCGGCAA AGGCGTGTTT ACGGTGATTG AGCATCAACT GCCGGATGAG CTGCCCGATG AAGAGTACCC ATTCCTGCTG ACCACGGGCC GCAAGCTGCA GCATTATAAC ATCTCCACCC GTTTCTCGGC GGCGCTGGAT GAGCATGCCC CCGAGGAATT GGCTGAGCTT AATCCTAAGG ACGCCCGGCG ATTGGGGATT CAGGATGGTG AGAAAATCAA GGTAGTTTCC CGCCGCGGTG AGGTAGTGAC CAAGGTTTGG GTAACCAAAC GAGTTCCGCC AGGGGTGCTC TTTATGACCC TGCACTATAG GGAGTCACCG ACCAATGTCT TAACCAATGG GGCGTATGAT AAAGTAACCA AGACCTACGA ATATAAGGTC TGTGGTGTAC GGGTGGAGGC TCTGAAGTAA

Product

Productfdh
DescriptionFormate dehydrogenase
Modifications1135..1137,aa:Sec
MYPLWKLYGF LQIWRGYPGL EGGVDLVEWL NLTIDEKEVV VPKGSTVLEA CRMYDIPIPT LCQDPELTNA GACRLCIVEI AGMRNLPPSC VTQVTQGMVV KTQTPKVRKS RKVILELLVA NHPLDCMTCQ KMGDCALAQY AYEYGVTGED YRGERRELPL DDSNPFILRD PNKCILCGKC VRACEEIQGR SVLDFFKRGF DSQVGPAFDV PYSESECVFC GSCVSVCPVG ALVEKKMVGQ ARAWNIEKVQ TTCPFCGTGC NFDLNVSNGK VIGVTSNPES PVNGKALCVK GRFGMDLIHS PQRLTTPLIK KDGEFVPAGW DEALDLIAAK FSQIKEDYGP DSFAALSSAR CTNEENYLMQ KFMRAVIGTN NVDHCARTUH APTVAGLATS FGSGAMTNSI NEIPNAEVMF VIGSNTTEAH PIIGTKMKQA LARGAKLIVA DPREIELARD AHIWMRLKPG TDIALINGIM NIIVENGWED RAFIEERTEG YQELRENLKK FPPEEVSKIT GVPVELMAEA ARLYTSVERA QIFYTLGITE HVCGTDNVMS LANLAMLTGN IGKESSGVNP LRGQNNVQGA CDMGALPNVY PGYQSVTNPE ARAKFEEAWG VSLNPNQGFM IPDMFDSAVK KELRAMYIMG EDPVLTDADA NHVRKGLKAL DFLVVQNIFM SETAELADVI LPGASFAEKD GTFTNTERRV QRVNRAIKPI ANTKADWEII CELSNRMGYP MAYPSPAEIM LEVASLAPQF AGVTYERLGK KGLQWPVPHA EHPGTKFLHQ GKFTRGKGVF TVIEHQLPDE LPDEEYPFLL TTGRKLQHYN ISTRFSAALD EHAPEELAEL NPKDARRLGI QDGEKIKVVS RRGEVVTKVW VTKRVPPGVL FMTLHYRESP TNVLTNGAYD KVTKTYEYKV CGVRVEALK