Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200042"

Accession numberr200042 [export]
Locus nameselT1a
Recode1 nameselT1a_s_euk_drer
Descriptionfunction unknown
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismDanio rerio [details]

Sequence

GenBank IDsAY221264.1,NM_178290.3,BC054578.1
SequencemRNA of 961 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 152)
Descriptionselenocysteine incorporation.
GGCACGAGGG AAGATGCGCT GGCTGCCGTT CTCGGCTCTA CTATTATGGG CCTTATGTCT TCACAGCGCC TCTGCCGATA ACAATGGCGT GAAGAAAATG AAGATGCAGT TTGCCACGGG TCCACTTCTC AAATTCCAGA TTTGTGTCTC CTGAGGGTAC AAGCGGGTGT TTGAGGAGTA CACGCAGGCT TTGTACCAGC GGTACCCAGA CATCCGCATA GAGGGAGAGA ACTACCTTCC TCTGCCCCTC TACAGGCACA TTGCTTCCTT TCTGTCAATG TTTAAGCTGT TGTTAATCGG AGTGATCATC TTGGGCAAGG ATCCTTTTGC TTTATGTGGC ATGCAGGCTC CAGGGATCTG GGTTTGGAGT CAGGAGAATA AGATATATGC TTGTATGATG GTGTTCTTCT TCAGCAATAT GATCGAAAAT CAGTGCATGT CTACAGGCGC ATTTGAAATC ACGCTCAATG ATGTCCCAGT TTGGTCCAAG CTGGAGTCAG GACACCTGCC TTCAATGCAG CAGCTAGTCC AAATCCTGGA GAATGAGATG AAGATGAGCA TGCACATGGA CACACTTCCA CCCCATCAGT CATAACCTTG CCTCTGATTC ACTGAACTGA GCCTACGACC CCCTCCACAT TTCTGGTGGC GCTCTCCTAC GGTTGTGAGA TGGCATTTAT GAAGGTTTGT GCTGAAAGTA GCAACTACTA GCACACACCG GATGTTCTGC GCTCTCCTCA TCGTGCCCTT TGGAGATGCA GCACCTACAG CTGGTGTGGG ATCTACGGCA ACAACAGTGC TCAAATAAAC TGCAACCCCA TCCTCTGTGC AAAACCATTT GCTTCAGGAT AATGTTCCCA AGCATCACGT CATAAATTAT TTCTATTACA TCAGCAAAAA AATCTAACAT TTTAAGTGAT TTTGTTCTAA TCACCCGATG TCTAACCAGG TGTTCTTTAT T

Product

ProductselT1a
DescriptionSelenoprotein T, 1a; function unknown
Modifications152..154,aa:Sec
MQFATGPLLK FQICVSUGYK RVFEEYTQAL YQRYPDIRIE GENYLPLPLY RHIASFLSMF KLLLIGVIIL GKDPFALCGM QAPGIWVWSQ ENKIYACMMV FFFSNMIENQ CMSTGAFEIT LNDVPVWSKL ESGHLPSMQQ LVQILENEMK MSMHMDTLPP HQS

Publication