Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200062"

Accession numberr200062 [export]
Locus namecps
Recode1 namecps_p_bac_psa
Descriptioncapsid protein
Recode statusReviewed

Organism

Genomic classViral Genome (Phage)
OrganismListeria phage 2389 [details]

Sequence

VariantListeria phage PSA
GenBank IDsAJ312240.2
SequenceDNA of 1315 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type+1 Frameshifting (position: 1,153)
Descriptionproduction of fusion protein. stimulation of frameshifting by putative 3' RNA pseudoknot was not varified expirementally
ATGAATAACC TTGATAAAAA AGATTCAGAA ACATTGAACA TCAGCACAGC ATTTTTAAAC GCAATTAAAG AAGGCGCGAC AGAAGCGGAG CAAGTAACAG CGTTTACAAA CATGGCTGAA CAAATTCAAA ACAATATTAT CGCTCAAGCT CGTAAAGAAG TAAATAGAGA AATGAATGAT AATAATGTAC TCGCTAGCCG TGGTGCCAAC GCTTTAACAA GTGATGAAAG CAAATACTAT AATGAAGTCA TTGCAGGAAA CGGTTTTGCT GGAGTTACTG CATTACTTCC ACCTACCGTT TTTGAGCGTG TGTTTGAAGA TTTAACGGTG GAACATCCTC TATTAAGTAA AATTAATTTT GTTAATACTA CTGCAACAAC GGAATGGATT ATTAGTGTTG GTGATGTCGC AACTGCTTGG TGGGGTCCTT TATGTGCCGA GATTAAAGAA GTTTTAGACA ATGGTTTTGA TAAAATTCAA ACTGGAATGT ATAAATTATC TGCTTATATT CCGGTTTGTA ATGCAATGCT CGATTTAGGA CCGTCGTGGT TAGATCAATA TGTTCGTACT ATTTTAGGTG AAGCAATGGC GCTTGGTCTT GAGGCTGGTA TTGTTAATGG TTCCGGGAAA GACCAACCAA TCGGAATGAT GCGCGATTTG AATAATGTTA CGGCTGGGGA ACACCCAGTT AAAACCGCAA CACCCCTGAC CGATTTGACA CCAGCTACAC TAGCAACAAA AGTAATGTTA CCTCTGACAG ACAACGGAAA GAAATCTGTC AGTGATGCGA TTCTTGTTAT AAATCCAGCT GATTACTGGA GCAAAATCTA TGCGGCAACT AGTTACATGA CGCCCCAAGG AGTTTGGGTG ACAGGTATCT TACCAGTTCC ACTTGAGATT GTTCAATCGG TTGCAGTGCC TGTCGGTAAA GCAGTAGCCG GTCGTGCTAA GGATTACTTT ATGGGAATTG GTTCAGAGCA AGTTATTCGC ACATCAACTG AATATCGTTT ATTAGACGAT GAAACACTCT ACTATGCTAA GCAATATGCG AATGGTCGAC CTAAAGACAA TTCTTCTTTC TTAGTATTCG ATATTACAGG TCTAGAAGGT TCGCCTGCTA TTGATGTGAA TGTAGTGAAT AACGCGACAC CCTCCGAAAC CCCTGCTGAA TAAAGCGGGG AATAACTATT CTACTATGAA AGTTGTAGAG TTAAAAGAAG AACTAGATAA GCGAGGAATC ACATATAACA CTTCGGATTT AAAATCTGAC TTAATATTAA AGTTAGAGGA GGATGATTTA AATGCAGGTG TCTGA

Products

ProductCP
Descriptioncapsid protein
MNNLDKKDSE TLNISTAFLN AIKEGATEAE QVTAFTNMAE QIQNNIIAQA RKEVNREMND NNVLASRGAN ALTSDESKYY NEVIAGNGFA GVTALLPPTV FERVFEDLTV EHPLLSKINF VNTTATTEWI ISVGDVATAW WGPLCAEIKE VLDNGFDKIQ TGMYKLSAYI PVCNAMLDLG PSWLDQYVRT ILGEAMALGL EAGIVNGSGK DQPIGMMRDL NNVTAGEHPV KTATPLTDLT PATLATKVML PLTDNGKKSV SDAILVINPA DYWSKIYAAT SYMTPQGVWV TGILPVPLEI VQSVAVPVGK AVAGRAKDYF MGIGSEQVIR TSTEYRLLDD ETLYYAKQYA NGRPKDNSSF LVFDITGLEG SPAIDVNVVN NATPSETPAE
ProductCP-orf2
Modifications1152..1154:ribosomal_frameshift
MNNLDKKDSE TLNISTAFLN AIKEGATEAE QVTAFTNMAE QIQNNIIAQA RKEVNREMND NNVLASRGAN ALTSDESKYY NEVIAGNGFA GVTALLPPTV FERVFEDLTV EHPLLSKINF VNTTATTEWI ISVGDVATAW WGPLCAEIKE VLDNGFDKIQ TGMYKLSAYI PVCNAMLDLG PSWLDQYVRT ILGEAMALGL EAGIVNGSGK DQPIGMMRDL NNVTAGEHPV KTATPLTDLT PATLATKVML PLTDNGKKSV SDAILVINPA DYWSKIYAAT SYMTPQGVWV TGILPVPLEI VQSVAVPVGK AVAGRAKDYF MGIGSEQVIR TSTEYRLLDD ETLYYAKQYA NGRPKDNSSF LVFDITGLEG SPAIDVNVVN NATPPKPLLN KAGNNYSTMK VVELKEELDK RGITYNTSDL KSDLILKLEE DDLNAGV

Publication