Recode v. 2.0 / Database of translational recoding events.
Details for "r200062"
| Accession number | r200062 [export] |
| Locus name | cps |
| Recode1 name | cps_p_bac_psa |
| Description | capsid protein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Phage) |
| Organism | Listeria phage 2389 [details] |
Sequence
| Variant | Listeria phage PSA |
| GenBank IDs | AJ312240.2 |
| Sequence | DNA of 1315 nucleotides [sequence] |
| Organisation | Pseudoknot (1) [see structure]
|
Recoding event
| Event type | +1 Frameshifting (position: 1,153) |
| Description | production of fusion protein. stimulation of frameshifting by putative 3' RNA pseudoknot was not varified expirementally |
ATGAATAACC TTGATAAAAA AGATTCAGAA ACATTGAACA TCAGCACAGC ATTTTTAAAC GCAATTAAAG
AAGGCGCGAC AGAAGCGGAG CAAGTAACAG CGTTTACAAA CATGGCTGAA CAAATTCAAA ACAATATTAT
CGCTCAAGCT CGTAAAGAAG TAAATAGAGA AATGAATGAT AATAATGTAC TCGCTAGCCG TGGTGCCAAC
GCTTTAACAA GTGATGAAAG CAAATACTAT AATGAAGTCA TTGCAGGAAA CGGTTTTGCT GGAGTTACTG
CATTACTTCC ACCTACCGTT TTTGAGCGTG TGTTTGAAGA TTTAACGGTG GAACATCCTC TATTAAGTAA
AATTAATTTT GTTAATACTA CTGCAACAAC GGAATGGATT ATTAGTGTTG GTGATGTCGC AACTGCTTGG
TGGGGTCCTT TATGTGCCGA GATTAAAGAA GTTTTAGACA ATGGTTTTGA TAAAATTCAA ACTGGAATGT
ATAAATTATC TGCTTATATT CCGGTTTGTA ATGCAATGCT CGATTTAGGA CCGTCGTGGT TAGATCAATA
TGTTCGTACT ATTTTAGGTG AAGCAATGGC GCTTGGTCTT GAGGCTGGTA TTGTTAATGG TTCCGGGAAA
GACCAACCAA TCGGAATGAT GCGCGATTTG AATAATGTTA CGGCTGGGGA ACACCCAGTT AAAACCGCAA
CACCCCTGAC CGATTTGACA CCAGCTACAC TAGCAACAAA AGTAATGTTA CCTCTGACAG ACAACGGAAA
GAAATCTGTC AGTGATGCGA TTCTTGTTAT AAATCCAGCT GATTACTGGA GCAAAATCTA TGCGGCAACT
AGTTACATGA CGCCCCAAGG AGTTTGGGTG ACAGGTATCT TACCAGTTCC ACTTGAGATT GTTCAATCGG
TTGCAGTGCC TGTCGGTAAA GCAGTAGCCG GTCGTGCTAA GGATTACTTT ATGGGAATTG GTTCAGAGCA
AGTTATTCGC ACATCAACTG AATATCGTTT ATTAGACGAT GAAACACTCT ACTATGCTAA GCAATATGCG
AATGGTCGAC CTAAAGACAA TTCTTCTTTC TTAGTATTCG ATATTACAGG TCTAGAAGGT TCGCCTGCTA
TTGATGTGAA TGTAGTGAAT AACGCGACAC CCTCCGAAAC CCCTGCTGAA TAAAGCGGGG AATAACTATT
CTACTATGAA AGTTGTAGAG TTAAAAGAAG AACTAGATAA GCGAGGAATC ACATATAACA CTTCGGATTT
AAAATCTGAC TTAATATTAA AGTTAGAGGA GGATGATTTA AATGCAGGTG TCTGA
Products
| Product | CP |
| Description | capsid protein |
MNNLDKKDSE TLNISTAFLN AIKEGATEAE QVTAFTNMAE QIQNNIIAQA RKEVNREMND NNVLASRGAN
ALTSDESKYY NEVIAGNGFA GVTALLPPTV FERVFEDLTV EHPLLSKINF VNTTATTEWI ISVGDVATAW
WGPLCAEIKE VLDNGFDKIQ TGMYKLSAYI PVCNAMLDLG PSWLDQYVRT ILGEAMALGL EAGIVNGSGK
DQPIGMMRDL NNVTAGEHPV KTATPLTDLT PATLATKVML PLTDNGKKSV SDAILVINPA DYWSKIYAAT
SYMTPQGVWV TGILPVPLEI VQSVAVPVGK AVAGRAKDYF MGIGSEQVIR TSTEYRLLDD ETLYYAKQYA
NGRPKDNSSF LVFDITGLEG SPAIDVNVVN NATPSETPAE
| Product | CP-orf2 |
| Modifications | 1152..1154:ribosomal_frameshift |
MNNLDKKDSE TLNISTAFLN AIKEGATEAE QVTAFTNMAE QIQNNIIAQA RKEVNREMND NNVLASRGAN
ALTSDESKYY NEVIAGNGFA GVTALLPPTV FERVFEDLTV EHPLLSKINF VNTTATTEWI ISVGDVATAW
WGPLCAEIKE VLDNGFDKIQ TGMYKLSAYI PVCNAMLDLG PSWLDQYVRT ILGEAMALGL EAGIVNGSGK
DQPIGMMRDL NNVTAGEHPV KTATPLTDLT PATLATKVML PLTDNGKKSV SDAILVINPA DYWSKIYAAT
SYMTPQGVWV TGILPVPLEI VQSVAVPVGK AVAGRAKDYF MGIGSEQVIR TSTEYRLLDD ETLYYAKQYA
NGRPKDNSSF LVFDITGLEG SPAIDVNVVN NATPPKPLLN KAGNNYSTMK VVELKEELDK RGITYNTSDL
KSDLILKLEE DDLNAGV
Publication
- Zimmer M, Sattelberger E, Inman RB, Calendar R, Loessner MJ. (2003) Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed + 1 translational frameshifting in structural protein synthesis. Mol Microbiol. 50(1):303-317. [abstract]