Recode v. 2.0 / Database of translational recoding events.
Details for "r200119"
| Accession number | r200119 [export] |
| Locus name | gp5B |
| Recode1 name | gp5B_m_bac_LCBA2 |
| Description | capsid protein |
| Recode status | Validated |
Organism
| Genomic class | Viral Genome (Phage) |
| Organism | Lactobacillus phage A2 [details] |
Sequence
Recoding event
| Event type | -1 Frameshifting (position: 1,197) |
| Description | production of fusion protein and set the ratio between two protein products protein products |
ATGACTTTAG ATGAAAAATT AGCTGCTGTT AAAAAGCAAC TTGATGAAAA GCGTTCAGCG TTGCCAGCTA
TGAAGACAGA ACTTCGTTCT TTACTTGAAG GTGAAGATTC CGAGGAAAAC CTGAAGAAGG CAGAAGGCGT
TCGTGCCAAG TATGATAAAG CTGGCAAAGA GATCAAAGAT CTTGAAGAAA AACGTGACTT ATACGAGGCT
GCGTTGAAAG GCAATGAACA GTCGAGTGGG AAGAAGCCCG ATCATCCGGA AGAGCATAGC TATCGCGATG
CACTGAATGC TTATTTGCAT ACTCGTGGTC GTAATACTGA TGGCGTCAAT TTTGAAAAGA CTGATGTTGG
CACATTTGCA GTTTTACGAG CTGTTCCTAC TGATGCCAGT GATGCGGTAA ATGCCGGTGT CAAGGCTGCA
GACGCGGCCT CGACCATTCC AGAAACTATT AGCAATACAC CACAGCGTGA ATTGCAGACT GTTGTTGATC
TGAAACCTTT CACGAACGTA TTCCAAGCCT CTACACAAAA GGGTACTTAC CCAACAGTTG CAAATGCCAC
AACCAAGATG GTCACTGTCG CCGAGTTGGA AAAGAACCCA GCAATGGCAA AACCAGAATT CAAGCCGGTC
AACTGGTCTG TTGAAACGTA TCGTCAGGCG TTACCAGTAT CGCAGGAGTC AATTGACGAC TCTGCGATTG
ATTTGGTTGG CCTGATTGCC CAGAACGGAC AACAGATTAA GGTCAATACG ACTAACGGTG CTGTTGCAAC
TCTGCTGAAA GGCTTCACTG CCAAGACAAT CTCTAGCGTT GATGATTTGA AGCATATCAA TAACGTTGAT
TTAGATCCTG CATATTCTCG TGTAATTATT GCTTCACAGA GTTTCTACAA TTTCTTGGAC ACAGTTAAAG
ATGGCAATGG TCGCTACTTG CTACAAGATA GCATCTTGAC CCCGTCTGGC AAGAGCGTTC TTGGTATGCC
GATTGCTGTT GTATCTGATG ATACTTTGGG TGCAGCAGGC GAAGCACACG CCTTTTTGGG TGACATCAAG
CGGGCAATTC TGTTTGCTAA CCGCGCAGAC TTCATGGTTC GCTGGGTTGA TGATCAGATT TACGGCCAAT
TCTTGCAAGC AGGAATGCGC TTTGGTGTAT CTGTTGCTGA CGAAAAGGCT GGCTACTTCC TCACATACAC
CCCAAAAGCG TAACGCCTGA CGGAGTGACT TTGAGCCAGA AAACGCTCAC GGGTGCTGTC GGTTCCACAA
AAGACATCAC GGTGACAGTC ACTCCTGATG GCGCTCCTCA AGCAGTCGAA GCTGTGTCGA GCGATGAAAG
TGTCGCTACG GTTGTTAAGA AGTCCGATGG TGTTTACACC ATTACCAATC TGGCAGCGGG TGCAGCGACA
ATCACATTTA GCACTAATGG CATCAGATCA ACACTTGCCG TTACTGTTAA CGCCGGGTAG
Products
| Product | gp5B |
| Description | Capsid protein |
MTLDEKLAAV KKQLDEKRSA LPAMKTELRS LLEGEDSEEN LKKAEGVRAK YDKAGKEIKD LEEKRDLYEA
ALKGNEQSSG KKPDHPEEHS YRDALNAYLH TRGRNTDGVN FEKTDVGTFA VLRAVPTDAS DAVNAGVKAA
DAASTIPETI SNTPQRELQT VVDLKPFTNV FQASTQKGTY PTVANATTKM VTVAELEKNP AMAKPEFKPV
NWSVETYRQA LPVSQESIDD SAIDLVGLIA QNGQQIKVNT TNGAVATLLK GFTAKTISSV DDLKHINNVD
LDPAYSRVII ASQSFYNFLD TVKDGNGRYL LQDSILTPSG KSVLGMPIAV VSDDTLGAAG EAHAFLGDIK
RAILFANRAD FMVRWVDDQI YGQFLQAGMR FGVSVADEKA GYFLTYTPKA
| Product | gp5B-orf2 |
| Description | Capsid protein |
| Modifications | 1197..1197:ribosomal_frameshift |
MTLDEKLAAV KKQLDEKRSA LPAMKTELRS LLEGEDSEEN LKKAEGVRAK YDKAGKEIKD LEEKRDLYEA
ALKGNEQSSG KKPDHPEEHS YRDALNAYLH TRGRNTDGVN FEKTDVGTFA VLRAVPTDAS DAVNAGVKAA
DAASTIPETI SNTPQRELQT VVDLKPFTNV FQASTQKGTY PTVANATTKM VTVAELEKNP AMAKPEFKPV
NWSVETYRQA LPVSQESIDD SAIDLVGLIA QNGQQIKVNT TNGAVATLLK GFTAKTISSV DDLKHINNVD
LDPAYSRVII ASQSFYNFLD TVKDGNGRYL LQDSILTPSG KSVLGMPIAV VSDDTLGAAG EAHAFLGDIK
RAILFANRAD FMVRWVDDQI YGQFLQAGMR FGVSVADEKA GYFLTYTPKS VTPDGVTLSQ KTLTGAVGST
KDITVTVTPD GAPQAVEAVS SDESVATVVK KSDGVYTITN LAAGAATITF STNGIRSTLA VTVNAG
Publication
- García P, Rodríguez I, Suárez JE. (2004) A -1 ribosomal frameshift in the transcript that encodes the major head protein of bacteriophage A2 mediates biosynthesis of a second essential component of the capsid. J Bacteriol. 186(6):1714-1719. [abstract]