Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200142"

Accession numberr200142 [export]
Locus namegrdB
Recode1 namegrdB_s_pro_eaci
Descriptionglycine reductase
Recode statusValidated

Organism

Genomic classBacteria (Chromosome)
OrganismEubacterium acidaminophilum [details]

Sequence

GenBank IDsY14275.1
SequenceDNA of 1317 nucleotides [sequence]

Recoding event

Event typeSelenocysteine (position: 1048)
DescriptionSelenocysteine incorporation at UGA codon. Selenocysteine insertion sequence (SECIS) is not yet identified in gram-positive bacteria; in some selenoproteins' mRNA from gram-positive bacteria a stable stem-loop structure is predicted to form in 3'UTR. But there has been no experimental evidence presented of such case.
ATGAGCAAAA TTAGAGTGGT TCATTATATA AACCAATTCT TCGCAGGTGT TGGTGGAGAA GAAAAAGCTG ACATAGAGCC TTTTATAGCC GAGTCGCTTC CGCCAGTTAG CCAGAGCCTT TCAAACCTTA TAAAGGATGA GGCTGAAGTT GTAGGAACAG TAGTTTGCGG AGACTCATAC TTCGGAGAAA ACCTTGTAGA AGCTAAAAAC AGAATACTTG AAATGATCAA GTCTTTCAAT CCGGACATAG TAGTAGCAGG ACCAGCTTTC AACGCAGGAA GATACGGTGT TGCAGCTGCA ACTGTAACTA AGGCTGTTCA GGACGAGCTT GGAATACCAG CAGTAACTGG TATGTACATC GAAAACCCAG GCGCTGACAT GTTCAAGAAA TACGCATACA TCATATCTAC TGGAAACTCA GCTGCAGCAA TGAGAACAGC TCTTCCAGCA ATGGCTAAGT TCGCTATGAA GCTTGCTAAA GGCGAAGAAA TAGGCGGACC AGTTGCAGAA GGATACATCG AAAGAGGTAT CAGGTTTAAC ATGTTCAAAG AAGACAGAGG AGCTAAGAGA GCTGTCGCTA TGCTTGTTAA GAAGCTTAAA GGCGAAGAGT ATGAAACTGA GTATCCAATG CCTTCATTCG ACAAGGTTGA GCCAGGAAAA GCTATAAAAG ACATGTCTAA AGCTAAAATA GCCATAGTAA CTTCTGGTGG TATAGTTCCA AAAGGAAACC CAGACAGAAT AGAGTCTTCA TCAGCTTCTA AGTATGGCAA GTATGACATA CAAGGAATAG ATGATCTTAC TTCAGAAGGC TGGGAGACAG CTCACGGCGG ACACGACCCA ATCTACGCTA ACGAAGATGC AGACAGGGTT ATACCAGTAG ACGTGCTTAG AGACATGGAG AAAGAAGGCG TAATAGGCGA GCTTCACAGA TACTTCTACT CAACAACTGG TAACGGTACT GCTGTTGCAA GCTCTAAGAA ATTCGCTGAA GAATTCACTA AGGAACTAGT AGCAGATGGC GTTGATGCTG TTATACTAAC TTCTACATGA GGCACTTGTA CTAGATGCGG TGCATCTATG GTTAAAGAAA TAGAAAGATC TGGAATACCA GTAGTTCACA TAGCTACAGT TACTCCAATA TCTCTAACAG TTGGAGCCAA CAGAATAGTT CCAGCTATAG CAATACCTCA CCCACTTGGA AACCCAGCTC TTTCTCATGA AGAGGAAAAA GCTCTTAGAA GAAAGATAGT TGAAAAGGCT CTTGAAGCCC TTCAAACCGA GGTTGAAGAG CAGACGGTAT TCGAAAGAAA CTATTAA

Product

ProductgrdB
Descriptionglycine reductase complex selenoprotein B
Modifications1048..1050,aa:Sec
MSKIRVVHYI NQFFAGVGGE EKADIEPFIA ESLPPVSQSL SNLIKDEAEV VGTVVCGDSY FGENLVEAKN RILEMIKSFN PDIVVAGPAF NAGRYGVAAA TVTKAVQDEL GIPAVTGMYI ENPGADMFKK YAYIISTGNS AAAMRTALPA MAKFAMKLAK GEEIGGPVAE GYIERGIRFN MFKEDRGAKR AVAMLVKKLK GEEYETEYPM PSFDKVEPGK AIKDMSKAKI AIVTSGGIVP KGNPDRIESS SASKYGKYDI QGIDDLTSEG WETAHGGHDP IYANEDADRV IPVDVLRDME KEGVIGELHR YFYSTTGNGT AVASSKKFAE EFTKELVADG VDAVILTSTU GTCTRCGASM VKEIERSGIP VVHIATVTPI SLTVGANRIV PAIAIPHPLG NPALSHEEEK ALRRKIVEKA LEALQTEVEE QTVFERNY

Publication