Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200143"

Accession numberr200143 [export]
Locus namegrdH
Recode1 namegrdH_s_pro_eaci
Descriptionbetain reductase
Recode statusProvisional

Organism

Genomic classBacteria (Chromosome)
OrganismEubacterium acidaminophilum [details]

Sequence

GenBank IDsY17145.1
SequenceDNA of 1314 nucleotides [sequence]

Recoding event

Event typeSelenocysteine (position: 1045)
DescriptionSelenocysteine incorporation at UGA codon. Selenocysteine insertion sequence (SECIS) is not yet identified in gram-positive bacteria; in some selenoproteins' mRNA from gram-positive bacteria a stable stem-loop structure is predicted to form in 3'UTR. But there has been no experimental evidence presented of such case.
ATGAAAAAAG CAATCTTATA CTTGAACCAG TTCTTTGGAC AGGTAGGCGG TGAAGACAAG GCTGATTACG AGCCTGAAAT AATAAACGGA CAAGTAGGCG CGGCTATGAT GCTTAACGGA GTTCTAGAAG GTGCCGAGGT TACACACACG ATAATATGTG GTGACAACTT CATGGGAACG TACAAGGATG AGGCCGTTAG TAGAATAATG GGATTCCTCG AGGACAAGGA GTTCGACATA TTCCTTGCAG GACCGGCATT CCAGGCAGGA AGATACGGCG TGGCTTGTGG AGAAATATGC AAGGTAGTAA AAGAAAAGTA CAACGTACCT GTAGTTACAT CTATGCATGT TGAAAATCCT GGAGTTCAGA TGTTCAAAAA GGACATGTAC GTGATGATAG GCGGAAACAA TGCAGGTAGA ATGAGACAGG ACATGAGCGC CATGGCTAAG GTGGCCAACA AGATTATTGC AGGAGAGAAA ATCGGACCTG CAGACGAGGA AGGATTCTTC CCAAGAGGAA AGAGGCATCA GCACTGGAGA GAAGACGGAA AGCCTGCTTC TGAAAGAGTA GTTGATATGC TGCTTAAAAA GCTAAGCGGT GAAGAGTTCC AGACAGAGCT TCCAATACCT AAGTCAGACA GAGTAGAAAT AGCTGCGCCT ATAAAGGACC TTTCGAAGGC AACTATAGCT GTAGTTACTA CAGGCGGAAT AGTTCCTGTT GACAACCCTG ACAGAATCCA ATCGGCTTCA GCCACAAGAT GGGGTATGTA TGATGTGACA GGACTTGAAA GGCTTGAAGG TGGCGTTTAC AAGACTATAC ACGCGGGCTT CGACCCTGCC GCTGCAGACG CTGATCCAAA CGTTATAGTT CCACTTGACG CCCTTAGAGC ATATGAGAAG GAAGGCAAGA TAGGAAAGGT TCACGAGTAC TTCTACTCTA CAGTCGGAAC TGGAACTACA GAGGCGGAAG CTGCAAGAAT GGCCAAGGAA ATAGTTGTAA AGCTTAAACA AGGCGGAGTT GACGGCGTTA TCATGACTTC TACCTGAGGC ACGTGTACAC GTTGCGGTGC AACGATGGTA AAAGAAATAG AAAGAGCCGG ATTCCCAATA GTTCAAATGT GCAACCTTAT CCCTGTTGCC TCTACAGTTG GAGCCAACAA AATAGTTCCT ACAATATCAA TACCATATCC TTTGGGAGAT CCATCAACAT CCAAGGAGCA GCAGTGGAAA CTTAGGTACC ACAGGGTTGG AACGGCTCTA GATGCTCTAA CAGTAGATGT TCAGGAGCAG ACAATATTCA AGGTGAAAAT ATAA

Product

ProductgrdH
Descriptionbetaine reductase
Modifications1045..1047,aa:Sec
MKKAILYLNQ FFGQVGGEDK ADYEPEIING QVGAAMMLNG VLEGAEVTHT IICGDNFMGT YKDEAVSRIM GFLEDKEFDI FLAGPAFQAG RYGVACGEIC KVVKEKYNVP VVTSMHVENP GVQMFKKDMY VMIGGNNAGR MRQDMSAMAK VANKIIAGEK IGPADEEGFF PRGKRHQHWR EDGKPASERV VDMLLKKLSG EEFQTELPIP KSDRVEIAAP IKDLSKATIA VVTTGGIVPV DNPDRIQSAS ATRWGMYDVT GLERLEGGVY KTIHAGFDPA AADADPNVIV PLDALRAYEK EGKIGKVHEY FYSTVGTGTT EAEAARMAKE IVVKLKQGGV DGVIMTSTUG TCTRCGATMV KEIERAGFPI VQMCNLIPVA STVGANKIVP TISIPYPLGD PSTSKEQQWK LRYHRVGTAL DALTVDVQEQ TIFKVKI

Publication