Recode v. 2.0 / Database of translational recoding events.
Details for "r200179"
| Accession number | r200179 [export] |
| Locus name | gag-pro |
| Recode1 name | pol_m_tra_herv |
| Description | viral or mobile polyprotein |
| Recode status | Validated |
Organism
| Genomic class | Eukaryota (Transposable element) |
| Organism | Human endogenous retrovirus K [details] |
| Acronym | HERV-K |
Sequence
| Variant | HERV-K10 |
| GenBank IDs | M14123.1 |
| Sequence | DNA of 2111 nucleotides [sequence] |
| Organisation | Pseudoknot (1) [see structure]
|
Recoding event
| Event type | -1 Frameshifting (position: 1,131) |
| Description | production of fusion protein and set the ratio between two protein products |
ATGCCCCCAG CACCACAGGG CAGGGCGCCA TACCATCAGC CGCCCACTAG GAGACTTAAT CCTATGGCAC
CACCTAGTAG ACAGGGTAGT GAATTACATG AAATTATTGA TAAATCAAGA AAGGAAGGAG ATACTGAGGC
ATGGCAATTC CCAGTAACGT TAGAACCGAT GCCACCTGGA GAAGGAGCCC AAGAGGGAGA GCCTCCCACA
GTTGAGGCCA GATACAAGTC TTTTTCGATA AAAATGCTAA AAGATATGAA AGAGGGAGTA AAACAGTATG
GACCCAACTC CCCTTATATG AGGACATTAT TAGATTCCAT TGCTTATGGA CATAGACTCA TTCCTTATGA
TTGGGAGATT CTGGCAAAAT CGTCTCTCTC ACCCTCTCAA TTTTTACAAT TTAAGACTTG GTGGATTGAT
GGGGTACAAG AACAGGTCCG AAGAAATAGG GCTGCCAATC CTCCAGTTAA CATAGATGCA GATCAACTAT
TAGGAATAGG TCAAAATTGG AGTACTATTA GTCAACAAGC ATTAATGCAA AATGAGGCCA TTGAGCAAGT
TAGAGCTATC TGCCTTAGAG CTTGGGAAAA AATCCAAGAC CCAGGAAGTA CCTGCCCCTC ATTTAATACA
GTAAGACAAG GTTCAAAAGA GCCCTACCCT GATTTTGTGG CAAGGCTCCA AGATGTTGCT CAAAAGTCAA
TTGCCGATGA AAAAGCCGGT AAGGTCATAG TGGAGTTGAT GGCATATGAA AACGCCAATC CTGAGTGTCA
ATCAGCCATT AAGCCATTAA AAGGAAAGGT TCCTGCAGGA TCAGATGTAA TCTCAGAATA TGTAAAAGCC
TGTGATGGAA TCGGAGGAGC TATGCATAAA GCTATGCTTA TGGCTCAAGC AATAACAGGA GTTGTTTTAG
GAGGACAAGT TAGAACATTT GGAGGAAAAT GTTATAATTG TGGTCAAATT GGTCACTTAA AAAAGAATTG
CCCAGTCTTA AACAAACAGA ATATAACTAT TCAAGCAACT ACAACAGGTA GAGAGCCACC TGACTTATGT
CCAAGATGTA AAAAAGGAAA ACATTGGGCT AGTCAATGTC GTTCTAAATT TGATAAAAAT GGGCAACCAT
TGTCGGGAAA CGAGCAAAGG GGCCAGCCTC AGGCCCCACA ACAAACTGGG GCATTCCCAA TTCAGCCATT
TGTTCCTCAG GGTTTTCAGG GACAACAACC CCCACTGTCC CAAGTGTTTC AGGGAATAAG CCAGTTACCA
CAATACAACA ATTGTCCCTC ACCACAAGCG GCAGTGCAGC AGTAGATTTA TGTACTATAC AAGCAGTCTC
TCTGCTTCCA GGGGAGCCCC CACAAAAAAT CCCTACAGGG GTATATGGCC CACTGCCTGA GGGGACTGTA
GGACTAATCT TGGGAAGATC AAGTCTAAAT CTAAAAGGAG TTCAAATTCA TACTAGTGTG GTTGATTCAG
ACTATAAAGG CGAAATTCAA TTGGTTATTA GCTCTTCAAT TCCTTGGAGT GCCAGTCCAA GAGACAGGAT
TGCTCAATTA TTACTCCTGC CATATATTAA GGGTGGAAAT AGTGAAATAA AAAGAATAGG AGGGCTTGTA
AGCACTGATC CAACAGGAAA GGCTGCATAT TGGGCAAGTC AGGTCTCAGA GAACAGACCT GTGTGTAAGG
CCATTATTCA AGGAAAACAG TTTGAAGGGT TGGTAGACAC TGGAGCAGAT GTCTCTATTA TTGCTTTAAA
TCAGTGGCCA AAAAACTGGC CTAAACAAAA GGCTGTTACA GGACTTGTCG GCATAGGCAC AGCCTCAGAA
GTGTATCAAA GTATGGAGAT TTTACATTGC TTAGGGCCAG ATAATCAAGA AAGTACTGTT CAGCCAATGA
TTACTTCAAT TCCTCTTAAT CTGTGGGGTC GAGATTTATT ACAACAATGG GGTGCGGAAA TCACCATGCC
CGCTCCATTA TATAGCCCCA CGAGTCAAAA AATCATGACC AAGATGGGAT ATATACCAGG AAAGGGACTA
GGGAAAAATG AAGATGGCAT TAAAGTTCCA GTTGAGGCTA AAATAAATCA AGAAAGAGAA GGAATAGGGT
ATCCTTTTTA G
Products
| Product | gag |
| Description | Gag capsid polyprotein |
MPPAPQGRAP YHQPPTRRLN PMAPPSRQGS ELHEIIDKSR KEGDTEAWQF PVTLEPMPPG EGAQEGEPPT
VEARYKSFSI KMLKDMKEGV KQYGPNSPYM RTLLDSIAYG HRLIPYDWEI LAKSSLSPSQ FLQFKTWWID
GVQEQVRRNR AANPPVNIDA DQLLGIGQNW STISQQALMQ NEAIEQVRAI CLRAWEKIQD PGSTCPSFNT
VRQGSKEPYP DFVARLQDVA QKSIADEKAG KVIVELMAYE NANPECQSAI KPLKGKVPAG SDVISEYVKA
CDGIGGAMHK AMLMAQAITG VVLGGQVRTF GGKCYNCGQI GHLKKNCPVL NKQNITIQAT TTGREPPDLC
PRCKKGKHWA SQCRSKFDKN GQPLSGNEQR GQPQAPQQTG AFPIQPFVPQ GFQGQQPPLS QVFQGISQLP
QYNNCPSPQA AVQQ
| Product | gag-pol |
| Description | RNA polymerase |
| Modifications | 1131..1131:ribosomal_frameshift |
MPPAPQGRAP YHQPPTRRLN PMAPPSRQGS ELHEIIDKSR KEGDTEAWQF PVTLEPMPPG EGAQEGEPPT
VEARYKSFSI KMLKDMKEGV KQYGPNSPYM RTLLDSIAYG HRLIPYDWEI LAKSSLSPSQ FLQFKTWWID
GVQEQVRRNR AANPPVNIDA DQLLGIGQNW STISQQALMQ NEAIEQVRAI CLRAWEKIQD PGSTCPSFNT
VRQGSKEPYP DFVARLQDVA QKSIADEKAG KVIVELMAYE NANPECQSAI KPLKGKVPAG SDVISEYVKA
CDGIGGAMHK AMLMAQAITG VVLGGQVRTF GGKCYNCGQI GHLKKNCPVL NKQNITIQAT TTGREPPDLC
PRCKKGKHWA SQCRSKFDKN GQPLSGNRAK GPASGPTTNW GIPNSAICSS GFSGTTTPTV PSVSGNKPVT
TIQQLSLTTS GSAAVDLCTI QAVSLLPGEP PQKIPTGVYG PLPEGTVGLI LGRSSLNLKG VQIHTSVVDS
DYKGEIQLVI SSSIPWSASP RDRIAQLLLL PYIKGGNSEI KRIGGLVSTD PTGKAAYWAS QVSENRPVCK
AIIQGKQFEG LVDTGADVSI IALNQWPKNW PKQKAVTGLV GIGTASEVYQ SMEILHCLGP DNQESTVQPM
ITSIPLNLWG RDLLQQWGAE ITMPAPLYSP TSQKIMTKMG YIPGKGLGKN EDGIKVPVEA KINQEREGIG
YPF
Publications
- Ono M, Yasunaga T, Miyata T, Ushikubo H. (1986) Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome. J Virol. 60(2):589-598. [abstract]
- Wang Y, Wills NM, Du Z, Rangan A, Atkins JF, Gesteland RF, Hoffman DW. (2002) Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: a mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site. RNA. 8(8):981-996. [abstract]