Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200190"

Accession numberr200190 [export]
Locus namegag-pro-pol
Recode1 namepol_m_vir_blv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBovine leukemia virus [details]
AcronymBLV

Sequence

GenBank IDsAF033818.1,M10987.1
Sequencess-RNA of 4669 nucleotides [sequence]

Recoding events

Event type-1 Frameshifting (position: 2,132)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
Event type-1 Frameshifting (position: 1,596)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GAAGCGTTCT CCTCCTGAGA CCCTAGTGCT CAGCTCTCGG TCCTGAGCTC TCTTGCTCCC GAGACCTTCT GGTCGGCTAT CCGGCAGCGG TCAGGTAAGG CAAACCACGG TTTGGAGGGT GGTTCTCGGC TGAGACCGCC GCGAGCTCTA TCTCCGGTCC TCTGACCGTC TCCACGTGGA CTCTCTCTCT TGCCTCCTGA CCCCGCGCTC CAAGGGCGTC TGGCTTGCAC CCGCGTTTGT TTCCTGTCTT ACTTTCTGTT TCTCGCGGCC CGCGCTCTCT CCCTCGGCGC CCTCTAGCGG CCAGGAGAGA CCGGCAAACA ATTGGGGGCT CGTCCGGGAT TGATCACCCC GGAACCCTAA CGATCCTCTG GACCCACCCC CTCGGCGGCG TTTTGGGTCT TTCCTTTAAA TTATATCATG GGAAATTCCC CCTCCTATAA CCCCCCCGCT GGTATCTCCC CCTCAGACTG GCTCAACCTT CGTCAAAGCG CGCAAAGGCT CAATCCGCGA CCCTCTCCTA GCGATTTTAC CGATTTAAAA AATTACATCC ATTGGTTTCA TAAGACCCAG AAAAAACCAT GGACTTTCAC TTCTGGTGGC CCCGCCTCAT GCCCACCCGG GAAATTCGGT CGGGTTCCCC TCGTCTTGGC CACCCTAAAC GAAGTACTCT CAAACGATGA GGGCGCCCCA GGTGCATCAG CCCCAGAAGA ACAACCCCCC CCTTATGACC CCCCCGCCAT TTTGCCAATT ATATCTGAAG GAAATCGCAA CCGCCATCGC GCTTGGGCAC TCCGAGAATT ACAAGATATT AAAAAAGAAA TTGAAAATAA GGCACCGGGT TCGCAAGTAT GGATACAAAC ACTACGACTT GCAATCTTAC AGGCCGACCC TACTCCTGCT GACCTAGAAC AACTTTGCCA ATATATTGCT TCCCCGGTCG ATCAAACGGC CCACATGACC AGCCTAACGG CAGCAATAGC CGCCGCTGAA GCGGCCAATA CCCTCCAGGG TTTTAATCCC CAAAATGGGA CCCTGACCCA ACAATCAGCT CAGCCCAACG CCGGGGACCT TAGAAGTCAA TATCAAAACC TTTGGCTTCA GGCCTGGAAA AATCTCCCTA CTCGTCCTTC AGTACAACCC TGGTCCACCA TCGTCCAAGG CCCCGCCGAG AGCTATGTAG AGTTTGTCAA CCGGTTACAA ATTTCATTAG CTGACAACCT TCCCGACGGA GTCCCTAAAG AACCCATTAT TGACTCCCTT AGCTATGCTA ATGCTAACAA AGAATGCCAA CAAATTTTGC AAGGGCGGGG CCTAGTGGCC GCCCCGGTGG GACAAAAACT GCAGGCTTGT GCACATTGGG CCCCCAAGGT TAAACAGCCT GCAATCCTCG TCCACACCCC AGGGCCCAAG ATGCCCGGGC CTCGGCAACC GGCCCCCAAA AGGCCCCCCC CGGGACCATG CTATCGATGC CTCAAAGAAG GCCATTGGGC CCGGGACTGT CCCACCAAGA CCACCGGCCC CCCTCCGGGA CCTTGTCCCA TATGTAAAGA TCCTTCCCAT TGGAAACGAG ACTGTCCAAC CCTCAAATCA AAAAACTAAT AGAGGGGGGA CTTAGCGCCC CCCAAACCGT AACCCCTATA ACAGATCCTC TTAGTGAGGC CGAATTAGAA TGCCTACTTT CTATTCCTCT GGCTCGCAGC CGTCCCTCCG TGGCTGTATA CCTGTCTGGC CCCTGGCTGC AGCCCTCTCA GAATCAAGCC CTTATGCTCG TGGACACCGG GGCTGAAAAT ACGGTCCTCC CACAAAATTG GCTGGTTCGA GATTACCCAC GGATCCCCGC CGCGGTGCTC GGAGCAGGGG GAGTCTCCCG GAACAGATAC AATTGGCTAC AAGGCCCTCT GACCCTGGCT CTAAAACCAG AGGGTCCCTT TATCACCATC CCAAAAATTT TAGTTGACAC TTTCGATAAA TGGCAAATTT TAGGACGGGA CGTCCTCTCC CGCCTACAGG CCTCTATCTC CATACCTGAG GAGGTACGCC CCCCCATGGT AGGCGTCCTA GATGCCCCCC CGAGCCACAT TGGATTAGAA CATTTGCCCG TCCCACCTGA GGTACCTCAA TTCCCTTTAA ACTAGAACGC CTCCAGGCCC TTCAAGACCT GGTCCATCGC TCTCTGGAGG CAGGCTATAT CTCCCCCTGG GACGGGCCAG GCAATAATCC AGTATTCCCG GTACGGAAAC CAAATGGCAC CTGGAGGTTT GTGCATGATC TACGAGCTAC AAATGCTCTT ACAAAGCCCA TCCCGGCGCT CTCCCCCGGA CCGCCAGACC TTACCGCTAT CCCTACACAC CTTCCACATA TCATTTGCCT AGATCTCAAA GATGCCTTCT TCCAGATTCC AGTCGAAGAC CGCTTCCGCT CCTATTTTGC TTTTACCCTC CCTACCCCCG GGGGACTCCA ACCTCACAGA CGCTTTGCCT GGCGGGTCCT ACCTCAAGGC TTCATTAACA GCCCAGCTCT TTTCGAACGG GCACTACAGG AACCCCTTCG CCAAGTTTCC GCCGCCTTCT CCCAGTCTCT TCTGGTGTCC TATATGGACG ATATCCTTAT CGCTTCGCCT ACAGAAGAAC AACGGTCACA ATGTTATCAA GCCCTGGCTG CCCGCCTCCG GGACCTAGGG TTTCAGGTGG CGTCTGAAAA GACTCGCCAG ACGCCTTCGC CCGTCCCCTT CTTGGGACAA ATGGTCCATA ACCAGATTGT CACCTATCAG TCCCTACCTA CCTTGCAGAT CTCATCCCCA ATTTCTCTTC ACCAATTACA GGCGGTCTTG GGAGACCTCC AGTGGGTCTC TAGGGGCACA CCCACTACCC GCCGGCCCCT GCAACTTCTC TACTCTTCCC TTAAAGGCAT CGATGACCCT AGGGCCATCA TCCAGCTTTC CCCGGAACAG CTACAAGGCA TTGCAGAGCT TCGACAAGCC CTGTCCCATA ACGCAAGATC TAGATATAAC GAGCAAGAAC CCCTGCTGGC CTACGTACAC CTAACCCGGG CAGGGTCCAC CCTGGTACTC TTCCAAAAGG GCGCTCAATT TCCCCTGGCC TACTTTCAGA CCCCCTTGAC TGACAACCAA GCCTCACCTT GGGGCCTCCT TCTCCTGCTG GGATGCCAAT ACCTGCAGAC TCAGGCCTTA AGCTCTTATG CCAAGCCCAT ACTCAAATAC TATCACAATC TTCCTAAAAC CTCTCTCGAC AATTGGATTC AATCATCTGA GGACCCTCGA GTTCAGGAGT TGTTGCAATT GTGGCCCCAG ATTTCCTCTC AGGGAATACA GCCCCCGGGC CCCTGGAAAA CCTTGATCAC CAGGGCAGAG GTTTTTTTGA CGCCCCAGTT CTCTCCTGAA CCGATTCCTG CGGCCCTTTG CCTCTTTAGT GACGGGGCTA CAGGACGAGG AGCATATTGC CTGTGGAAAG ACCACCTTTT GGACTTTCAG GCCGTTCCGG CTCCAGAGTC CGCCCAAAAG GGAGAACTAG CAGGTCTCTT GGCGGGCTTA GCAGCCGCCC CGCCTGAACC TTTAAATATA TGGGTAGATT CCAAATACCT ATACTCCTTG CTCAGAACCC TAGTTCTGGG AGCTTGGCTT CAACCTGACC CCGTACCCTC CTATGCCCTC CTATATAAAA GCCTCCTCCG ACATCCAGCA ATCTTTGTTG GTCATGTCCG GAGCCACTCC TCAGCATCCC ACCCTATTGC TTCCCTGAAC AATTATGTAG ATCAACTGCT CCCCTTAGAA ACTCCAGAGC AATGGCATAA GCTCACCCAC TGCAACTCTC GGGCCTTGTC TCGATGGCCG AACCCACGTA TTTCGGCCTG GGATCCCCGT TCCCCCGCTA CGCTGTGTGA AACCTGTCAA AGGCTCAATC CAACTGGAGG TGGGAAGATG CGAACTATTC AGAGAGGGTG GGCCCCGAAT CATATTTGGC AGGCCGATAT AACCCATTAT AAATACAAAC AGTTCACCTA CGCTTTGCAC GTGTTTGTAG ATACTTACTC TGGAGCTACT CATGCCTCAG CAAAGCGAGG GCTCACCACT CAAATGACCA TTGAGGGCCT TCTAGAGGCC ATAGTGCATC TGGGTCGTCC AAAAAAGCTA AACACTGACC AAGGCGCAAA CTACACCTCC AAAACCTTTG TCAGGTTTTG CCAGCAGTTC GGAATTTCCC TTTCTCATCA CGTTCCCTAC AACCCCACAA GTTCAGGGTT GGTAGAGCGG ACAAATGGAC TGCTCAAACT TCTTTTGTCT AAATATCACC TAGACGAACC CCACCTTCCC ATGACTCAGG CCCTTTCTCG AGCCCTCTGG ACTCACAATC AGATTAACCT CCTACCAATT CTAAAGACCA GATGGGAGTT ACACCATTCA CCCCCACTTG CTGTCATTTC AGAGGGCGGA GAAACACCCA AGGGCTCTGA TAAACTCTTT TTGTACAAGC TCCCCGGGCA AAACAATCGT CGGTGGCTAG GACCTCTCCC GGCCCTAGTC GAAGCCTCGG GAGGCGCCCT CCTGGCTACT AACCCCCCCG TGTGGGTTCC CTGGCGTTTG CTAAAAGCCT TCAAATGCCC AAAGAACGAC GGTCCCGAAG ACGCCCACAA CCGATCATCA GATGGGTAA

Products

Productgag
Descriptiongag capsid polyprotein
MGNSPSYNPP AGISPSDWLN LRQSAQRLNP RPSPSDFTDL KNYIHWFHKT QKKPWTFTSG GPASCPPGKF GRVPLVLATL NEVLSNDEGA PGASAPEEQP PPYDPPAILP IISEGNRNRH RAWALRELQD IKKEIENKAP GSQVWIQTLR LAILQADPTP ADLEQLCQYI ASPVDQTAHM TSLTAAIAAA EAANTLQGFN PQNGTLTQQS AQPNAGDLRS QYQNLWLQAW KNLPTRPSVQ PWSTIVQGPA ESYVEFVNRL QISLADNLPD GVPKEPIIDS LSYANANKEC QQILQGRGLV AAPVGQKLQA CAHWAPKVKQ PAILVHTPGP KMPGPRQPAP KRPPPGPCYR CLKEGHWARD CPTKTTGPPP GPCPICKDPS HWKRDCPTLK SKN
Productgag-pro
Descriptiongag capsid polyprotein, protease
Modifications1596..1596:ribosomal_frameshift
MGNSPSYNPP AGISPSDWLN LRQSAQRLNP RPSPSDFTDL KNYIHWFHKT QKKPWTFTSG GPASCPPGKF GRVPLVLATL NEVLSNDEGA PGASAPEEQP PPYDPPAILP IISEGNRNRH RAWALRELQD IKKEIENKAP GSQVWIQTLR LAILQADPTP ADLEQLCQYI ASPVDQTAHM TSLTAAIAAA EAANTLQGFN PQNGTLTQQS AQPNAGDLRS QYQNLWLQAW KNLPTRPSVQ PWSTIVQGPA ESYVEFVNRL QISLADNLPD GVPKEPIIDS LSYANANKEC QQILQGRGLV AAPVGQKLQA CAHWAPKVKQ PAILVHTPGP KMPGPRQPAP KRPPPGPCYR CLKEGHWARD CPTKTTGPPP GPCPICKDPS HWKRDCPTLK SKNLIEGGLS APQTVTPITD PLSEAELECL LSIPLARSRP SVAVYLSGPW LQPSQNQALM LVDTGAENTV LPQNWLVRDY PRIPAAVLGA GGVSRNRYNW LQGPLTLALK PEGPFITIPK ILVDTFDKWQ ILGRDVLSRL QASISIPEEV RPPMVGVLDA PPSHIGLEHL PVPPEVPQFP LN
Productgag-pro-pol
Descriptiongag capsid polyprotein, protease, RNA polymerase
Modifications1596..1596:ribosomal_frameshift|2132..2132:ribosomal_frameshift
MGNSPSYNPP AGISPSDWLN LRQSAQRLNP RPSPSDFTDL KNYIHWFHKT QKKPWTFTSG GPASCPPGKF GRVPLVLATL NEVLSNDEGA PGASAPEEQP PPYDPPAILP IISEGNRNRH RAWALRELQD IKKEIENKAP GSQVWIQTLR LAILQADPTP ADLEQLCQYI ASPVDQTAHM TSLTAAIAAA EAANTLQGFN PQNGTLTQQS AQPNAGDLRS QYQNLWLQAW KNLPTRPSVQ PWSTIVQGPA ESYVEFVNRL QISLADNLPD GVPKEPIIDS LSYANANKEC QQILQGRGLV AAPVGQKLQA CAHWAPKVKQ PAILVHTPGP KMPGPRQPAP KRPPPGPCYR CLKEGHWARD CPTKTTGPPP GPCPICKDPS HWKRDCPTLK SKNLIEGGLS APQTVTPITD PLSEAELECL LSIPLARSRP SVAVYLSGPW LQPSQNQALM LVDTGAENTV LPQNWLVRDY PRIPAAVLGA GGVSRNRYNW LQGPLTLALK PEGPFITIPK ILVDTFDKWQ ILGRDVLSRL QASISIPEEV RPPMVGVLDA PPSHIGLEHL PVPPEVPQFP LNLERLQALQ DLVHRSLEAG YISPWDGPGN NPVFPVRKPN GTWRFVHDLR ATNALTKPIP ALSPGPPDLT AIPTHLPHII CLDLKDAFFQ IPVEDRFRSY FAFTLPTPGG LQPHRRFAWR VLPQGFINSP ALFERALQEP LRQVSAAFSQ SLLVSYMDDI LIASPTEEQR SQCYQALAAR LRDLGFQVAS EKTRQTPSPV PFLGQMVHNQ IVTYQSLPTL QISSPISLHQ LQAVLGDLQW VSRGTPTTRR PLQLLYSSLK GIDDPRAIIQ LSPEQLQGIA ELRQALSHNA RSRYNEQEPL LAYVHLTRAG STLVLFQKGA QFPLAYFQTP LTDNQASPWG LLLLLGCQYL QTQALSSYAK PILKYYHNLP KTSLDNWIQS SEDPRVQELL QLWPQISSQG IQPPGPWKTL ITRAEVFLTP QFSPEPIPAA LCLFSDGATG RGAYCLWKDH LLDFQAVPAP ESAQKGELAG LLAGLAAAPP EPLNIWVDSK YLYSLLRTLV LGAWLQPDPV PSYALLYKSL LRHPAIFVGH VRSHSSASHP IASLNNYVDQ LLPLETPEQW HKLTHCNSRA LSRWPNPRIS AWDPRSPATL CETCQRLNPT GGGKMRTIQR GWAPNHIWQA DITHYKYKQF TYALHVFVDT YSGATHASAK RGLTTQMTIE GLLEAIVHLG RPKKLNTDQG ANYTSKTFVR FCQQFGISLS HHVPYNPTSS GLVERTNGLL KLLLSKYHLD EPHLPMTQAL SRALWTHNQI NLLPILKTRW ELHHSPPLAV ISEGGETPKG SDKLFLYKLP GQNNRRWLGP LPALVEASGG ALLATNPPVW VPWRLLKAFK CPKNDGPEDA HNRSSDG*

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