Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200192"

Accession numberr200192 [export]
Locus name39K-pol
Recode1 namepol_m_vir_bydv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBarley yellow dwarf virus [details]
AcronymBYDV

Sequence

GenBank IDsX07653.1
SequenceRNA of 5677 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)

Recoding event

Event type-1 Frameshifting (position: 1,158)
Descriptionproduction of fusion protein and set the ratio between two protein products. Shift site: 1152-1158, and nts 1164-1243 and 5046-5100 are essential. Nts 1096-1151, 5101-5279 enhance frameshifting. Secondary structures are phylogenetically conserved, but functions not tested.
NGTGAAGATT GACCATCTCA CAAAAGCTGT TACGTGCTTG TAACACACTA CGCGCCCGTT TTGTATTCGG GAAGTAGTTG CGAAAACGGT CCCCTTATTG CCTGACAAGC TAAGGGCCAC CCTTCTTTCC CCACCGCCAT CATGTTTTTC GAAATACTAA TAGGTGCTAG CGCCAAGGCG GTCAAAGACT TCATTAGCCA TTGCTATTCT AGATTGAAAT CTATATACTA TTCTTTCAAG CGATGGCTAA TGGAGATATC AGGGCAATTT AAGGCCCACG ACGCCTTTGT CAACATGTGC TTTGGGCACA TGGCTGACAT TGAGGACTTC GAGGCGGAAC TCGCTGAGGA GTTCGCCGAG AGGGAGGATG AGGTGGAAGA GGCGAGGAGC CTCTTGAAAC TGCTGGTCGC CCAAAAATCT AAATCTGGGG TGACCGAGGC TTGGACCGAC TTTTTTACAA AGTCGAGAGG TGGTGTTTAC GCACCACTTT CCTGCGAGCC TACCAGGCAG GAGCTAGAAG TCAAGAGTGA GAAACTCGAG CGACTTCTAG AAGAGCAGCA CCAATTTGAG GTGCGAGCGG CCAAGAAATA CATCAAGGAA AAGGGCCGCG GCTTCATCAA CTGCTGGAAC GACTTGCGGA GTCGTCTCAG GTTGGTGAAG GACGTCAAGG ACGAGGCGAA GGACAACGCC AGAGCTGCTG CCAAGATTGG AGCAGAAATG TTCGCCCCTG TTGACGTGCA GGACCTCTAC AGTTTCACGG AGGTCAAGAA GGTGGAGACC GGCCTCATGA AGGAGGTCGT GAAAGAGAAA AACGGCGAAG AAGAGAAACA CCTCGAACCC ATCATGGAAG AGGTGAGGTC CATCAAGGAC ACCGCCGAAG CCAGGGACGC CGCCTCCACT TGGATAACAG AGACAGTTAA GCTGAAGAAC GCAACGCTTA ACGCAGATGA ACTGTCTCTT GCCACCATCG CCCGCTACGT TGAAAACGTA GGGGACAAGT TCAAACTCGA CATTGCTAGT AAAACATATC TAAAGCAAGT CGCATCGATG TCTGTACCAA TTCCAACCAA CAAAGACATC AAATTGAAGA TGGTGCTACA GAGTCCTGAA GCACGTGCCA GGCGGGAACG CATGGACGTG CTTGACTCTG TGGGTTTTTA GAGGGGCTCT GTACCGCCTC TGGTTTTGAG AGCCCATTCC CTATTCTCGG GCTGCCAGAG ATTGCGGTCA CAGACGGAGC CCGGCTCCGC AAGGTTAGTA GCAATATTAG ATACCTTAGC CAAACCCATC TAGGTCTTGT ATATAAGGCA CCAAATGCCT CCCTGCACAA CGCGCTTGTG GCAGTGGAGA GAAGAGTTTT TACAGTAGGA AAGGGGGACA AGGCAATCTA CCCCCCCCGC CCTGAGCATG ACATTTTCAC TGATACGATG GATTACTTTC AAAAATCCAT TATAGAAGAG GTGGGATACT GTAAAACATA TCCAGCGCAA CTCCTGGCTA ATAGCTATAG CGCAGGAAAG AGGGCCATGT ATCACAAAGC CATTGCATCC TTGAAAACTG TCCCATATCA TCAGAAGGAT GCCAATGTGC AAGCTTTCCT GAAGAAGGAA AAACATTGGA TGACCAAGGA CATCGCCCCC CGATTGATTT GCCCCCGCAG CAAGCGGTAT AATATCATCC TAGGAACTCG TTTGAAATTC AACGAGAAGA AGATCATGCA CGCCATCGAT AGTGTGTTTG GATCCCCCAC TGTGCTTTCT GGTTATGACA ACTTCAAACA AGGAAGAATC ATAGCCAAAA AGTGGCAAAA GTTTGCATGC CCCGTCGCCA TCGGCGTGGA TGCTAGCCGC TTTGACCAAC ATGTGTCAGA GCAGGCGCTT AAGTGGGAAC ACGGGATATA CAATGGAATC TTCGGAGACA GCGAAATGGC TCTTGCACTT GAACACCAAA TCACCAACAA CATCAAGATG TTTGTTGAAG ACAAAATGCT TAGGTTCAAG GTAAGAGGCC ACAGAATGTC CGGTGACATT AATACCAGCA TGGGAAATAA GCTCATAATG TGCGGCATGA TGCACGCATA TCTTAAGAAG CTGGGTGTTG AAGCTGAACT ATGTAATAAC GGAGACGACT GTGTCATCAT CACTGATAGA GCCAATGAGA AGCTCTTTGA TGGCATGTAC GACCATTTCC TCCAGTATGG CTTCAACATG GTGACCGAAA AACCAGTTTA CGAACTGGAA CAATTGGAGT TTTGCCAGTC AAAACCGGTC TCTATTAATG GAAAGTATAG AATGGTCAGA AGGCCCGATA GCATAGGCAA AGATAGCACA ACACTACTGA GCATGCTCAA TCAATCCGAC GTCAAGAGCT ACATGTCGGC TGTCGCTCAG TGTGGTTTGG TGCTCAACGC TGGAGTACCC ATACTTGAAA GTTTCTATAA ATGCCTATAT AGGAGCTCGG GGTACAAAAA AGTGAGTGAG GAATTTATTA AAAACGTCAT ATCGTATGGA ACAGATGAGA GACTACAAGG TAGACGTACC TATAATGAAA CACCTATCAC AAACCACAGT AGAATGTCCT ACTGGGAATC ATTCGGAGTT GACCCTAAGA TACAGCAAAT CGTCGAGAGG TACTACGACG GTCTTACGGT AAGTGCCCAA CTCCAGAGTG TGAAGGTGAC GACTCCACAT CTGCAATCAA TACTGCTTTC CATACCGGAA AACCACTCAC AAAACGAATA TTAATTACCA AATCTTAGCT GGGTTTGGGA TAGGGTTTAT AGTTAGTATA CCCTGTACAT TAGCTCTCGC GTACTTTATT TACAATAAAG TTTCAGACAC CACTAGAGAG GTGGTGAATG AATTCAGTAG GTCGTAGAGG ACCTAGACGC GCAAATCAAA ATGGCACAAG AAGGAGGCGC CGTAGAACAG TTCGGCCAGT GGTTGTGGTC CAACCCAATC GAGCAGGACC CAGACGACGA AATGGTCGAC GCAAGGGAAG AGGAGGGGCA AATTTTGTAT TTAGACCAAC AGGCGGGACT GAGGTATTCG TATTCTCAGT TGACAACCTT AAAGCCAACT CCTCCGGGGC AATCAAATTC GGCCCCAGTC TATCGCAATG CCCAGCGCTT TCAGACGGAA TACTCAAGTC CTACCATCGT TACAAGATCA CAAGTATCCG AGTTGAGTTT AAGTCACACG CGTCCGCCAA TACGGCAGGC GCTATCTTTA TTGAGCTCGA CACCGCGTGC AAGCAATCAG CCCTGGGTAG CTACATTAAT TCCTTCACCA TCAGCAAGAC CGCCTCCAAG ACCTTCCGGT CAGAGGCAAT TAATGGGAAG GAATTCCAGG AATCAACGAT AGACCAATTT TGGATGCTCT ACAAGGCCAA TGGAACTACC ACTGACACGG CAGGACAATT TATCATTACG ATGAGTGTCA GTTTGATGAC GGCCAAATAG GTAGACTCCT CAACACCGGA ACCAAAACCT GCACCGGAAC CAACACCAAC CCCCCAGCCA ACGCCGGCTC CACAGCCCAC ACCTGAACCA ACTCCTGCAC CTGTCCCCAA AAGATTCTTC GAGTATATCG GAACTCCTAC CGGTACAATC TCGACTAGAG AGAACACTGA CAGTATATCT GTCAGCAAGC TCGGTGGACA GTCGATGCAG TACATTGAGA ATGAGAAATG TGAAACGAAA GTCATCGATT CCTTTTGGAG CACTAACAAC AACGTTTCTG CGCAAGCAGC TTTCGTTTAT CCAGTGCCAG AGGGATCATA CAGCGTTAAC ATTTCGTGCG AAGGCTTCCA GTCAGTTGAC CACATCGGTG GCAACGAGGA CGGCTATTGG ATTGGTTTAA TTGCCTACTC CAATTCGTCT GGCGATAATT GGGGAGTTGG CAATTACAAA GGGTGCAGTT TTAAGAATTT CTTGGCAACC AACACTTGGA GACCAGGCCA CAAAGATCTC AAGTTGACTG ATTGCCAGTT CACAGATGGA CAAATAGTTG AAAGGGACGC CGTGATGTCT TTCCACGTAG AAGCAACAGG CAAGGATGCC AGCTTCTACC TCATGGCTCC CAAAACAATG AAAACTGACA AATACAACTA TGTTGTCTCA TATGGAGGGT ACACAAACAA GCGAATGGAA TTCGGTACCA TATCTGTGAC ATGTGATGAA TCCGATGTTG AGGCAGAACG AATAACAAGG CACGCTGAAA CGCCCATACG TTCTAAACAT ATTCTTGTTT CTGAGCGGTA TGCGGAACCA TTGCCCACCA TAGTCAACCA AGGCTTGTGT GATGTGAAAA CTCCCGAGCA AGAACAAACA CTGGTGGATG AAGATGACAG ACAAACTGTT TCTACTGAAT CTGATATAGC ACTCCTGGAG TATGAGGCTG CAACAGCTGA GATTCCGGAT GCTGAAGAGG ACGTTTTGCC CTCCAAGGAA CAGTTGTCTT CAAAACCAAT GGATACGTCT GGCAATATAA TACCAAAACC CAAGGAACCT GAAGTACTTG GGACATACCA AGGACAGAAC ATTTATCCTG AAGACGTACC TCCAATGGCG CGGCAGAAAT TGAGAGAAGC CGCGAATGCG CCTTCCACGC TACTCTATGA AAGAAGAACC CCAAAGAAGA GTGGCAACTT TTTATCCAGA CTTGTAGAAG CGAATAGGTC CCCTACTACT CCCACTGCCC CATCCGTGTC AACTACTTCA AACATGACAA GGGAGCAGCT CCGGGAGTAC ACTAGGATTA GAAATTCCAG CGGAATCACA GCAGCAAAGG CGTACAAGGC GCAATTCCAG TGAAGACAAC ACCACTAGCA CAAATCGGAT CCTGGGAAAC AGGCAGAACT TCGGTTCGTA AGCTCGGGTA GGCCGTCAAC CTACCGCCGT ATCGTATTGT GTTTGGCCGA TGGAGGATCT TCACGTTATC GCCGTTTGTA TTCTTGCTTT GACTGTGCTC TCTGGGGTAG GCGCTGTTTT GAGTTGCTGC CGTTGGTGCT GCAGCAATCC TTTTCCTCCC TCCCTCTCTT CTGTTCAAGC AAAAGACTCT CGATCTGTGC GAGAGACAAT CAAAAATATC GAGGGAGCTT CGGCTCAGTG AGGGGATTAA CGACCCCCAG TAATGGCCGG TCCTGGCGGA CATAAATAAC CCGCTATAGG ACGAAGTGGT AGCCACCACT GATCAAATGG CAAACATGCT TCTGTGTTGT ACACTGCCCC GGAGCCTACC GGGTCAACAA GGCTATCCCA CCAACCCGAT GAAATGAGGG TGGAGTGAGC GGAGTGGGTG ACTTCGTGAT GTACACCCGA TCGTCAGGAT TGAAGACGTT AAAACTCGAC GACCTGGTAC AAGTCGTTAA ACTGACTCGG GTGGATACAC CACACCCGGC CCAGCATGTT GGCATACCCA CGATACGAAA CGTGGGTCTC TTGGAGCCAC TACCTGTGAT GCAAGGTAGG GTATGAGTCT TAGCAAGCTC TGAGCCAGGA GATGGACATA AACCATAGCA ATCCAACGTG TAACCGCAAT GGGGCAAACA ACAGGTGAAC CGTGTCCACG GGCCTGGTTA CCGAAAGGAA AGCCAGTATC CAACACAGCA ATGTGTTGGG GGTCACACCT TCGGGGTACT CTTAACGCTG ACACTCGAAA GAGCAGTTCG GCAACCC

Products

Product39K
Descriptioncapsid polyprotein
MFFEILIGAS AKAVKDFISH CYSRLKSIYY SFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKSGVTEA WTDFFTKSRG GVYAPLSCEP TRQELEVKSE KLERLLEEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNARAAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLMKEVV KEKNGEEEKH LEPIMEEVRS IKDTAEARDA ASTWITETVK LKNATLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQV ASMSVPIPTN KDIKLKMVLQ SPEARARRER MDVLDSVGF
Product39K-pol
DescriptionRNA-dependent RNA polymerase
Modifications1158..1158:ribosomal_frameshift
MFFEILIGAS AKAVKDFISH CYSRLKSIYY SFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKSGVTEA WTDFFTKSRG GVYAPLSCEP TRQELEVKSE KLERLLEEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNARAAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLMKEVV KEKNGEEEKH LEPIMEEVRS IKDTAEARDA ASTWITETVK LKNATLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQV ASMSVPIPTN KDIKLKMVLQ SPEARARRER MDVLDSVGFL EGLCTASGFE SPFPILGLPE IAVTDGARLR KVSSNIRYLS QTHLGLVYKA PNASLHNALV AVERRVFTVG KGDKAIYPPR PEHDIFTDTM DYFQKSIIEE VGYCKTYPAQ LLANSYSAGK RAMYHKAIAS LKTVPYHQKD ANVQAFLKKE KHWMTKDIAP RLICPRSKRY NIILGTRLKF NEKKIMHAID SVFGSPTVLS GYDNFKQGRI IAKKWQKFAC PVAIGVDASR FDQHVSEQAL KWEHGIYNGI FGDSEMALAL EHQITNNIKM FVEDKMLRFK VRGHRMSGDI NTSMGNKLIM CGMMHAYLKK LGVEAELCNN GDDCVIITDR ANEKLFDGMY DHFLQYGFNM VTEKPVYELE QLEFCQSKPV SINGKYRMVR RPDSIGKDST TLLSMLNQSD VKSYMSAVAQ CGLVLNAGVP ILESFYKCLY RSSGYKKVSE EFIKNVISYG TDERLQGRRT YNETPITNHS RMSYWESFGV DPKIQQIVER YYDGLTVSAQ LQSVKVTTPH LQSILLSIPE NHSQNEY

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