Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200194"

Accession numberr200194 [export]
Locus namePro-VPg-Pol
Recode1 namepol_m_vir_bydv2
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCereal yellow dwarf virus - RPS [details]

Sequence

VariantMex
GenBank IDsAF235168.2
SequenceRNA of 3446 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,602)
Descriptionproduction of fusion protein and set the ratio between two protein products protein products. Accession no. NC002198. Mexican isolate of CYDV-RPV. Very different from New York isolate. 0-frame ORF is second ORF on mRNA, initiated by leaky scanning. Pseudoknot essentially same as beet western yellows virus (Su et al., Kim et al.)
NCGAAACAAG CTTAGGAGGA ATCCAGTTTC GCAGCTTCTC TAGCTCAACT TGCTTGTTTC CGCTCGCAAC AGCCATCCAC ACTCGTTATT AGTGTATGTT TGTTGCGACT CTTAGTGGAA GGGTTATCGT TCAATCGAGC GATAAAATCT ACTCAGGGTT CGTGCAGTAC GCCTCTTTCG GCTTACACTC CCTCTTCCAC GCAGCGCGCT CGGATTACCA CTATGGGCCC GAAGAAACTC AGCTTTTCTG TGTTTCTTTG GCTTATGTGT TTCCTCTCCT TCTCACAGGG GAATCACACG GGCATGGCAA CGGGATCCGA CTTCCCATCT CCTACTACCC TGATCTACTC AGGTGGGGTG TGGCCCTTGG TTACCCCCCA CAGCTCACCC GTAGCAGGAG AAAAGTGCAC ATTGACTTGT GCACCATGTC CAGTCAGGTC CATTACAGAG CCGAGTTACA AAGAATTACT ACAACAGCTC TGGGTGAAAG CCTGGTTAGA TTCCCGCGCG CTTTGCTTTA CGGCCATCGA CAGTTCCTCA CGATTCTTGA GTCATGCTTA CGAACTGTCG AGCGCAACAG CCCGCGCCTT GTTTGGACAA GTCCTGTGGT TCGCAGTCTA TCTGTGGACA AATGTATTGC TTCAAACTGC GCGTATTGTC TGCTCGGTCG TTGCCAGCTA CTACTTACAG GTCGCCTCTC TCATATCGCT CGGTATTACA ACGAGCTGGA TTTACAAGAT ATTGAGGTGG ACTTTTGGTA CTCTGCCGGC ATCTCTCTGC ATCAGGCTGG GGAAAAGTAT CTGCAGGGTT CTTACCTGCA GAAAATTCTT CAATGAAAAG TCTGTCGCTG GTTTCGACAG TTACTCGATC CCTCAGTCTC CCCCTAAGAA AAGCGTTATC ACACTGCGAC GTGCTGACAA AACCCACGTT GGTTTTGCCG TGTGCATTCG CTTGTTTAAT AACTCCAACG CTCTTGTGAC GAGTGAGCAC AACCTTAGGG AAGCGGACGC CTTCTATTCC CCCCGCACCG GGCGAGCCAT CAAGCTCGCT GAATTCAAAG TCATATTCAA AGATGCGGAT CTGGACGTAG CAATCGTTGC TGGTCCAGAC AATTGGGAAT CAGCGTTCGG ATGCGGAAGC GTCCATTTCA CCACACATGA TCGCTTGGCT AAGTGCCCTG CGCAGATCTA CGTTATTGAC GGTGAAGATT GGCGCGCTCA CTCAGCGAAG GTTGTCGGCC ACTTTGACAA CTTCGCGCAG GTCTTGTCCA ACACTAAACC GGGCTTCTCT GGAGCTGGAT ACTTCCACGG CAAGACTCTG CTTGGCGTAC ACAAAGGGCA CGCAGGCAAA GATTATAACT TCAATCTGAT GGCCCCCTTG CCTGCCATCC CCGGACTAAC ATCTCCCAAG TACGAAATAG AGTCAGACCC TCCGCAGGGT TTGATTTTCC CCTCTGAAGT CGCTGAGGAA ATCACGAAGA CCATTCAGTC GGTCTACAAT GATTTCCTGA AGCTTGACAA ATCCATTCAT TCCAAAGGCA AAGAGTGGAA GGGGGGCGTT GCTTGGGCTG ATCTTGAAGA TGAGTCCGGA AAGTCGGGAA ACGCCAAGGC GGCCGCGTCC GCCGTACCAA CCGCAGCACC AAAAGCCAAG GCCGTTATAA GCGCAACAAA GAAAGTTGCT GCACCTTCTT CGCAGAAGGA ACCGCCGCGC CAAGGTGCAT CCCAACCCAC ACCCACAACC TCGACGACAA CCCCATGTTC TCCCGTTGCT ATTGCAACAT CCCCGGACAC AAGTGTCCCT TCTGGGATGT CTCAGCAAGA CGTGATGCAG AACTTAATGA GTTTGCTCGT ACAGAGGATA GACATGTCGA AGATCGAGAA ATCGATAATA GATCAGGTCG CTGCACAAGC TCTGAAGAAA CCTCGCGGCA AGCGAGGCTC CAACAAGAAA CGCGCGCCTG GCAACAGTAC TTCGCCGATG TCTACACCTG GGAGATATCT ACCTCCGAAC AAGAGGTCCC AGGGTTCCAA AGGGTTGGAA AACTCTCCCC CCAGTACTAT CCCCGTGCCC GATCAACAAC AGCCTGGGGG GAGCGTCTCT GCGCCGAACA CCCGCTCTTG GGTGAGAAAA CAAAAGGTTT CGGGTGGCCC GCCGTTGGCG CCACCGCAGA ACTAACCTCT CTTCGGCTGC AAGCGGCTCG CTGGCTCGAA CGTTCCGAGT CAGCCAAAAT CCCATCAGAT GCCGCCCGCA AGAACGTGAT CGATCGCACC GTGCAAGCGT ACAGCAATTG CAAAACTAAT GTACCACGGT GCACACGAGA TCAGTTGAAC TGGGATGACT TTCGGATTGA CTTCCTCGAA GCCATCAAGT CTCTCCAGCT CGACGCCGGC GTGGGTATTC CCATGATCAC CGCGGGGCTC CCTACCCATC GTGGGTGGGT CGAAGACCCA GATCTTCTGC CGGTTCTGGC TCGGCTTACC TTTGACCGCC TACTTACGAT GTCAAAGGCA AGCCTTGAGA CGCGCTCTCC GGAGCAGCTC GTGAAGGAAA ATCTCTGCGA TCCAATACGC CTCTTCGTGA AACAAGAGCC ACATAAGCAG AGTAAGCTTG ATGAGGGCCG CTACCGCCTC ATCATGTCAG TTTCCTTGAT TGATCAACTG GTAGCCCGGG TTTTGTTTCA AGCTCAAAAC AAATCCGAGA TTGCATTGTG GAGTGCAATC CCGTCAAAAC CCGGATTCGG ATTATCCACC GAGGACCAAG TCGAAAGTTT TATCAATGTC CTCGCGGATA CCGCTGGTGC CCGTCCTGAA GAGATCTGCG ACAAGTGGCG CGATCTCTTG GTTCCGACAG ACTGTTCCGG TTTTGACTGG TCAGTCTCCG ATTGGATGCT CGCAGACGAT ATGGAGGTAA GAAATCGCCT TACCATTGAC TGCAATGAGC TCACCAGACA CCTTCGTGCT GTTTGGTTGC AAGGCATATC AAACTCTGTT TTATGCCTTT CGGATGGAAC CATGCTATCC CAGGTTAAGC CCGGGGTCCA AAAGAGTGGG TCGTACAACA CGTCATCTAC GAACTCTAGG ATCCGGGTTA TGGCTGCCTA TCATTGTGGC GCCTCCTGGG CGATAGCGAT GGGGGATGAT GCCCTCGAAG CGCCAGATAC AGATTTGAGC AAGTATAAAG ATCTGGGCTT CAAAGTCGAG GTTAGCAAGG AGCTGGAATT TTGTTCGCAC ATCTTCAAGT CTCCTACCCT CGCCATTCCG GTTAATGCCA ACAAGATGTT GTACCGCTTG ATCCACGGGT ACAATCCGGA ATGTGGAAAC GCAGAGGTGA TTGTCAATTA CCTCAATGCA GCCAGCTCAG TGCTGCATGA GCTCCGCCAT GATCAGGAGC TTTGCGCGTT ATTGCATATG TGGTTAGTAT CTGGCATAAC CACAAAAGAT AACTGA

Products

Productpro-VPg
Descriptionputative protease, VPg
MGPKKLSFSV FLWLMCFLSF SQGNHTGMAT GSDFPSPTTL IYSGGVWPLV TPHSSPVAGE KCTLTCAPCP VRSITEPSYK ELLQQLWVKA WLDSRALCFT AIDSSSRFLS HAYELSSATA RALFGQVLWF AVYLWTNVLL QTARIVCSVV ASYYLQVASL ISLGITTSWI YKILRWTFGT LPASLCIRLG KSICRVLTCR KFFNEKSVAG FDSYSIPQSP PKKSVITLRR ADKTHVGFAV CIRLFNNSNA LVTSEHNLRE ADAFYSPRTG RAIKLAEFKV IFKDADLDVA IVAGPDNWES AFGCGSVHFT THDRLAKCPA QIYVIDGEDW RAHSAKVVGH FDNFAQVLSN TKPGFSGAGY FHGKTLLGVH KGHAGKDYNF NLMAPLPAIP GLTSPKYEIE SDPPQGLIFP SEVAEEITKT IQSVYNDFLK LDKSIHSKGK EWKGGVAWAD LEDESGKSGN AKAAASAVPT AAPKAKAVIS ATKKVAAPSS QKEPPRQGAS QPTPTTSTTT PCSPVAIATS PDTSVPSGMS QQDVMQNLMS LLVQRIDMSK IEKSIIDQVA AQALKKPRGK RGSNKKRAPG NSTSPMSTPG RYLPPNKRSQ GSKGLENSPP STIPVPDQQQ PGGSVSAPNT RSWVRKQKVS GGPPLAPPQN
Productpro-VPg-pol
Descriptionputative protease, VPg, and RNA-dependent RNA polymerase
Modifications1602..1602:ribosomal_frameshift
MGPKKLSFSV FLWLMCFLSF SQGNHTGMAT GSDFPSPTTL IYSGGVWPLV TPHSSPVAGE KCTLTCAPCP VRSITEPSYK ELLQQLWVKA WLDSRALCFT AIDSSSRFLS HAYELSSATA RALFGQVLWF AVYLWTNVLL QTARIVCSVV ASYYLQVASL ISLGITTSWI YKILRWTFGT LPASLCIRLG KSICRVLTCR KFFNEKSVAG FDSYSIPQSP PKKSVITLRR ADKTHVGFAV CIRLFNNSNA LVTSEHNLRE ADAFYSPRTG RAIKLAEFKV IFKDADLDVA IVAGPDNWES AFGCGSVHFT THDRLAKCPA QIYVIDGEDW RAHSAKVVGH FDNFAQVLSN TKPGFSGAGY FHGKTLLGVH KGHAGKDYNF NLMAPLPAIP GLTSPKYEIE SDPPQGLIFP SEVAEEITKT IQSVYNDFLK LDKSIHSKGK EWKGGVAWAD LEDESGKSGN RQGGRVRRTN RSTKSQGRYK RNKESCCTFF AEGTAAPRCI PTHTHNLDDN PMFSRCYCNI PGHKCPFWDV SARRDAELNE FARTEDRHVE DREIDNRSGR CTSSEETSRQ ARLQQETRAW QQYFADVYTW EISTSEQEVP GFQRVGKLSP QYYPRARSTT AWGERLCAEH PLLGEKTKGF GWPAVGATAE LTSLRLQAAR WLERSESAKI PSDAARKNVI DRTVQAYSNC KTNVPRCTRD QLNWDDFRID FLEAIKSLQL DAGVGIPMIT AGLPTHRGWV EDPDLLPVLA RLTFDRLLTM SKASLETRSP EQLVKENLCD PIRLFVKQEP HKQSKLDEGR YRLIMSVSLI DQLVARVLFQ AQNKSEIALW SAIPSKPGFG LSTEDQVESF INVLADTAGA RPEEICDKWR DLLVPTDCSG FDWSVSDWML ADDMEVRNRL TIDCNELTRH LRAVWLQGIS NSVLCLSDGT MLSQVKPGVQ KSGSYNTSST NSRIRVMAAY HCGASWAIAM GDDALEAPDT DLSKYKDLGF KVEVSKELEF CSHIFKSPTL AIPVNANKML YRLIHGYNPE CGNAEVIVNY LNAASSVLHE LRHDQELCAL LHMWLVSGIT TKDN

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