Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200195"

Accession numberr200195 [export]
Locus nameORF1-ORF2 (pol)
Recode1 namepol_m_vir_carrot
Descriptionviral or mobile polyprotein
Recode statusProvisional

Organism

Genomic classViral Genome (Virus)
OrganismCarrot mottle mimic virus [details]
AcronymCMoMV

Sequence

GenBank IDsU57305.1
SequenceRNA of 4201 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,031)
Descriptionproduction of fusion protein and set the ratio between two protein products. Umbravirus frameshift signals resemble BYDV and dianthoviruses. Accesion no. NC_001726
GCAACGTTAT GGATCACATA ACTAAGTTCT TGCGAATGGA CTTCTCGCCC AAAGATGGCG TCCTAACCAG ACGCCAATGT GCTGAACGCT TCGATGACAC CTGGGGACTC TTAATTACCC AGGCGAGAAT GACCACAGCG CACACAGCGG ATATGTGTGC ATGGTACGAG GGGTCCCGGG AGACCAACCA GTACCTCCCC CTAGAGCAGT TCGTGGACTC CAGGGATGCC AGCAAGGAAG CTGAAGACAA GGTGGACAAA TTGTCCTCCC CCCCTACCCG AGGCTGTGGT GGTACCACGG TAAATGCTGA TGGGGGCCTT GTGGAGAACC CTCTCCCAAC TAATAGGGAT GAGATGCCTG CATCTAGCAT GCAGATGAAT GCCCCATCGG GTGGCATTGC CGTGGCCTCT GTTAATAGTG AGGTCGCGCG TTGGGTATTT GCTCTACCCC GTGAACTGGA TGAACCTATT ATGGAGACTC CAGTAGACCC GTCTGCTCCT ACAGAGGCAG AACGTGAGTT GGCGCGGGTA TTGAACAATA CCGTTGCTGT CGGGGACACT GCATCGGCAC TGTCCACCAT CCAGGAAGAG CCACAACACG AGGTAATTGC TGTGCCTGGG ACAGCCGTAG GAGTGGTCCA CCAAGAGGAC CCAGCCCCAG TAGAGGGCTC CCCTAGTACA AGGGATGCCG CCATGGAAGG CGATGCGGGC CACTCAGCCC ATGCCGGTGA TGACACCGAT GCCTCAGTGG AGATGCCCAC GACAGTGGAA GCAGCAGGGC CCCTAATGGA AGAGGGGCCA TCCATGGCTC ACTTAACGAG CTATACAGTA GCCATGGAAC TCAGGTCTAG ATTCGGCCTG CGACCGGCCA GCCCCGCTAA TATAGAATTA GGGGCGCGAG TTGCTAGGGA AATCCTGAAG ACCGCTGGGG CCAGACGCCA AGATAACTAC TATCTGGCCC AGCAGGCAGT CAAGTTTTTC CTGACGCCGA CACTCCTGGA TGTGGTGTAC AGCACACCCA TCCGGGATTT TTACTAGGGG ACGTCATTGC AAGGGATGGG GTGTGTACTA AAACAGTGCC TATCATATTG AGCCCCTCCT TGCACATCAG GCCGTCCGCA CGTCCCCGGC CTGTTAAAAG GGTATCTTAC CAGATTGACG CGGTAAGGCC CTCTGCTGAT TTTGGAGTTC ACAACAACTC CTTGGTGAAT CTCGTGAGGG GAATAAATGA GCGAGTGTTC TACACTGATA ATCGTGGCTC TCTTCCTGTT AGACCCACCC CAGGTAGGTT TGACCGTCTG ACTGTCGACA TAAAGCACTT CAAAATTAAT GCTTGGTCCA TGGAAGACGT CGTCAACAGT TATACCGGGA GACAAAGGGC AAGGTATGAG CAAGCGATGT TGTCTATCAT GGAACGACCG CTAGAACGGA GGGATGCTAG AGTGTCTACA TTTATAAAAG CGGAGAAGAT CAACTTTTCT GCCAAGCCGG ACCCAGCTCC CCGAGTCATC CAACCTCGAG ATCCCAGGTT CAATGTGGTA TTCGCGAAAT ACATTAAACC ACTTGAGCCA ATGTTGTATA AAGCTCTGGG CAGGTTGTAT GAACAACCGT GTGTCGCCAA GGGATTTAAT GCCTTCCAAA CTGGTGAGAT AATTAGGAAG AAGTGGGATT CATTCCGAAA TCCAGTTTGT GTAGGGCTAG ACGCTAGCCG ATTTGACCAG CATGTGTCAG TTGAAGCTTT AAAGTTCACA CATTCTGTGT ACAAGCGGTT CAATTCCTCT AAGGAGTTTG TGGACCTGCT CAACCAGATG TATGTTAATC GTGGACTTGG CACTTGCAAA GATGGTCTCG TTAAGTATAA GGTGAAGGGT TGCAGAATGA GCGGTGATAT GGATACCGCC CTGGGCAATT GTGTTCTCAT GGTCCTAATG ACACGAAATT TGTGTTTAGA CCTGTCCATC CCCCATGAGT TGATGGACAA TGGTGACGAT TGCATCGTCA TCTTTGAGAA GGAACATTTG CAAAGGTTTA ATGCAGCTGT CAAGCCATAC TTCGCAGCGT TGGGCTTCAC CATGAAAGTA GAAGCCCCTG TTTACCAATT TGAGAAAGTC GAATTTTGCC AAACCCAGCC AGTATTTGAT GGCACCCAAT GGAGAATGGT TAGGCAAATT CCTAGTATCG CTAAAGACCT ATGTAGCGTA ATCGATTGGG AACAGCTAGA ATCTTGGTGG CACGCGATAG GAAACTGCGG CCAGAGCTTG GCGGGAGGAT TGCCAGTGTT TGGCAGTTTT TACCGTTGGT TGTGTAGAAT TGGGAAAGCT AATACTAAAG TGACCGAGCA TCCACTGTAC AAATGCGGCA TGGTCAACCT TTCCCGTGGG ATGGATGCGC GAGATAAGCC CATCACAACT GAGGGACGCC TTAGTTTCAG CTTGGCGTTT GGATTGTCTA TTCCAATGCA AATAGCATTG GAGGGTATAT ATGACAATCT TAAGAGACCA GGTAGGGTAG TCCCGGGGGC TTGTGAAAGG CGAGGATTTA ATGACTGGTT CATACCAGAT GTTCAGTGCC TTAACCCATC CAGATCTGCA GTCCACACCG ACGAGGTTGA GGTGGAGGTT GATTTCCTCT ACCCTCCTCC CGTTTCCGCC TGTTGAGGCA GTCACGTAGC TAGTACCAGG TTGCAATACT AGAGCGTTAG TCCTGGGGCG TCCCTTTGGT GGAGGGCCGT CAAACCTAGA TAACTCAGTC ACCCAATCCT CCACTAGGCT CTGGAGGTTG GGCATCGTCA TGAACCTACA GATACAACCA ATAGGCGATG GCAATAATTC AAGCAGGAAC TCGAGAAGAC CTAATCAACC TTCTCCACGG CGCAGGGATC CAAGACAAGC TTCGGGATCT TGGCTTTGGT GTCCTAACAC CAGCCCGAGG CAGCAATACC CTTACATGTA CGCCACTATA CCCCCCAGAG CACCAACGAA CGGTCCGGGA TTTCTTTACC CGGAAATGGC GCACGAAGCG CAGTGGGGGT CTCCTGTTTA TAGAGAAGCT AGTAGTGGCA TTCCTGCCAC ACGTGCCCGA CGGAACCGCG GGCGAGGTAG TGTTGTGGCT CCACGATACG GCCCTGTCGG ACCTGGAACC GGTAGGCCGC AAAGTGTCAC TGAGCCTCAG CGGGGGACCG CGGCTGGTCG CTTTCTATCC GAATTACTCT ATTCCTTTGA GCGATTCGGC AGAGAGTGCC CCGCGATGTT TCTCCCTAGT GACCCAGCTT CAAGGCATCC GCCTGAAGAC TGGCTCCAGC GCCTTCTCCC TGCTCTCAAT GTGGAACCCA GTCATAGGAG AGAAGGCCCA ACACTACCAA GCAACAGAGC CGGAGTGTGT GCCCATAGTA AGGCACTCGA TAAGGAGCTC GTTGCAGACA CTGGCACTAC AGCGGCAGTA TCTGAACGCC GCGCTGACGA ACCCACTAGG AAGGAGCCAG AGGGGCAGCC AATCACTGAG GCACCCTCCA CTGGACTATG CTCTAAGCCC CACACGAGAG GCGAGCAGTG TTCAGATCCC ACCCTCCACT TCTAGTGCCA CCAAAGCCCA CCAATACCTT GAGTAAGCAT TGGTGCGTAT CTGTACTCAC GGCACCCGGG TTGTAGATAG TTTCCCCCGC GTAGCCAGAT CCCATGGATG GCGGCCATTA ACTTGCCCTG CCCATGGTTA AATAGAAGAG TGTTACTAGT TAGATGACAC CGGGACTAGA GGCCAAATCG CCCTGGAATG GGAAGGAGGC GAGACCAATG GTACGCCGTG GCTTCAGGGG TGTGGCTGGT TACCACACCC GGTATAACTC TGAGTCCAGT GAGTGGATAA ACTAGTAGCT AGATGCGCCT TGAGCCTCGT TGGGATTGGC AGCATCACTC TTGATATGCA TGGTGGAGCC AAAACTCCAG GTGAATAACC CACCAGCACC AAACAAATCC TCCCCCCCCT TAGTATAGGT CTCGATCTTA GAGACAAAAC CACACAGTGA TCAGAGATAC TGTGTGGGTG GTTGAGGAGT CACAGCCCAA GCTGTGCATT AGCCGTGCTA GGCTCGACCG CAATGTCGTA AACTTGTCCG CCTTGAGAAC TGGCAGTTAC TGGGATCGGG CATATAATAG GTACCAGAGC TCTCCATCTG ATTTAGCGCT GTCGCGGACG GCAGCGCGCC C

Products

ProductORF1
Descriptiongag capsid polyprotein
MDHITKFLRM DFSPKDGVLT RRQCAERFDD TWGLLITQAR MTTAHTADMC AWYEGSRETN QYLPLEQFVD SRDASKEAED KVDKLSSPPT RGCGGTTVNA DGGLVENPLP TNRDEMPASS MQMNAPSGGI AVASVNSEVA RWVFALPREL DEPIMETPVD PSAPTEAERE LARVLNNTVA VGDTASALST IQEEPQHEVI AVPGTAVGVV HQEDPAPVEG SPSTRDAAME GDAGHSAHAG DDTDASVEMP TTVEAAGPLM EEGPSMAHLT SYTVAMELRS RFGLRPASPA NIELGARVAR EILKTAGARR QDNYYLAQQA VKFFLTPTLL DVVYSTPIRD FY
ProductORF1-ORF2
Descriptiongag capsid polyprotein, RNA-dependent RNA polymerase
Modifications1031..1031:ribosomal_frameshift
MDHITKFLRM DFSPKDGVLT RRQCAERFDD TWGLLITQAR MTTAHTADMC AWYEGSRETN QYLPLEQFVD SRDASKEAED KVDKLSSPPT RGCGGTTVNA DGGLVENPLP TNRDEMPASS MQMNAPSGGI AVASVNSEVA RWVFALPREL DEPIMETPVD PSAPTEAERE LARVLNNTVA VGDTASALST IQEEPQHEVI AVPGTAVGVV HQEDPAPVEG SPSTRDAAME GDAGHSAHAG DDTDASVEMP TTVEAAGPLM EEGPSMAHLT SYTVAMELRS RFGLRPASPA NIELGARVAR EILKTAGARR QDNYYLAQQA VKFFLTPTLL DVVYSTPIRD FLLGDVIARD GVCTKTVPII LSPSLHIRPS ARPRPVKRVS YQIDAVRPSA DFGVHNNSLV NLVRGINERV FYTDNRGSLP VRPTPGRFDR LTVDIKHFKI NAWSMEDVVN SYTGRQRARY EQAMLSIMER PLERRDARVS TFIKAEKINF SAKPDPAPRV IQPRDPRFNV VFAKYIKPLE PMLYKALGRL YEQPCVAKGF NAFQTGEIIR KKWDSFRNPV CVGLDASRFD QHVSVEALKF THSVYKRFNS SKEFVDLLNQ MYVNRGLGTC KDGLVKYKVK GCRMSGDMDT ALGNCVLMVL MTRNLCLDLS IPHELMDNGD DCIVIFEKEH LQRFNAAVKP YFAALGFTMK VEAPVYQFEK VEFCQTQPVF DGTQWRMVRQ IPSIAKDLCS VIDWEQLESW WHAIGNCGQS LAGGLPVFGS FYRWLCRIGK ANTKVTEHPL YKCGMVNLSR GMDARDKPIT TEGRLSFSLA FGLSIPMQIA LEGIYDNLKR PGRVVPGACE RRGFNDWFIP DVQCLNPSRS AVHTDEVEVE VDFLYPPPVS AC

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