Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200196"

Accession numberr200196 [export]
Locus nameorf2a-orf2b
Recode1 namepol_m_vir_cocksfoot
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismCocksfoot mottle virus [details]

Sequence

GenBank IDsZ48630.1
SequenceRNA of 3429 nucleotides [sequence]
OrganisationStemloop (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,212)
Descriptionproduction of fusion protein and set the ratio between two protein products.
ATGGGTTGTT CTGTTGTTGG AAACTGCAAG TCCGTGATGT TGATGAGCAG GATGAGCTGG TCAAAGCTAG CTCTCCTCGT ATCCGTCGCA ATGGCGGCAG CCATGACAGA CTCCCCACCC ACTCTGATAT GTATGGGGAT CCTAGTGAGC GTGGTGCTCA ACTGGATCGT CTGCGCAGTA TGGCAAGAAG CTTCAGAGCT AATTCTGGGC GTTTCCTTGG AAGCGACTCG TCCTAGTCCC GCACGGGTCA TAGGAGAGCC GGTCTTTGAC CCCCGGTATG GCTATGTTGC TCCTGCTATC TATGATGGCA AGTCGTTTGA CGTGATCCTG CCTATTTCCG CTCTGTCCTC CGCTTCAACA AGGAAGGAGA CAGTAGAGAT GGCAGTTGAG AACTCACGGC TACAGCCTCT GGAAAGCAGT CAAACGCCGA AGTCCCTAGT GGCTTTGTAC TCGCAGGATC TGCTATCAGG CTGGGGTTCC CGGATTAAAG GCCCTGATGG CCAGGAATAC CTCTTGACAG CCCTGCATGT GTGGGAGACC AACATCTCTC ACCTTTGCAA GGACGGAAAG AAGGTACCGA TAAGCGGATG CCCAATCGTT GCGAGCTCTG CTGATTCGGA CTTGGACTTT GTCCTTGTGT CCGTGCCGAG GAACGCTTGG TCTGTTCTAG GCGTCGGTGT GGCTCGTTTG GAATTGCTCA AACGCCGAAC CGTCGTAACA GTCTATGGAG GCCTAGACTC AAAGACCACC TACTGTGCCA CTGGTGTGGC GGAGTTGGAA AATCCCTTCC GCATAGTCAC GAAAGTGACG ACAACGGGGG GGTGGTCAGG CTCTCCACTC TACCACAAGG ACGCAATCGT CGGGTTGCAC TTGGGTGCGA GACCATCTGC GGGGGTCAAT AGAGCGTGTA ACGTGGCTAT GGCCTTTAGG GTTGTGCGGA AATTTGTCAC TGTTGAAAAC AGTGAGTTAT ATCCCGACCA AAGCAGTGGC CCCGCCCGAG AGCTTGATGC TGAGACATAC ACGGAAAGGC TAGAGCAAGG AATTGCTTTT ACTGAGTACA ATATATCCGG CATTACGGTG AAAACCTCCG ACCGAGAGTG GACAACAGCT GAGGCGTTGC GTGTCGCAAG ATACAAACCC TTGGGTGGAG GAAAAGCATG GGGTGATAGT GATGACGAGG ACACCCAAGA AACTGCAATC CGGCCTTTAA ACTACCAGCG GGCGGGCTCC CTACGGGGCA GTCCGCCCTT GGCCAACTTA TCGAGTACGC GGGCTACGTC TGGCGTGACG AAGGAATCAT CAATTCCAAC GGCATGCCTT TCCGATCCGC TGGAAAGTCG AGTTGCCGGT TTAGAGAAGC TGTGTGCAGA GCGGTTCACA GAGATGTTCG AGCTGCTGAG ACAGAGTTCC CAGAACTCAA AGAGCTCGCC TGGCCAAGCC GCGGATCAAA AGCAGAAATC GGATCGCTCC TCTTCCAAGC CGGCAGGTTT GAGAGAGTCG AAGCGCCCGC CAATCTGCAA TTGGCAATCA CTAACCTCCA AGCCCAGTAC CCGAGGTCCA GACCCCGCTC CTGCTTCCGC AGAGAGCCCT GGTGTCGCGA AGACTTCGTC GCAGAAATCG AAAAGATCGC GCACTCGGGG GAAATCAACC TCAAAGCAAG TCCCGGCGTC CCCCTCGCCG AAATCGGGGT CAGCAACCAG CAAGTAATTG ATGTAGCTTG GCCCTTGGTG TGTGAGGCTG TGGTGGAAAG GCTCCATGCC TTGGCATCCG TAGACCCGCG CCAGCACGAT TGGTCTCCAG AAGAACTCGT GAAAAGAGGA TTGTGCGATC CAGTGAGACT CTTTGTCAAA CAGGAACCTC ATTCTCGACA GAAGATTGAA CAAGGTCGCT TCCGACTTAT CTCTTCTGTC TCACTTGTAG ATCAACTGGT AGAACGCATG CTTTTCGGAC CCCAGAATAC CACAGAGATT GCTTTGTGGC ATTCAAATCC CTCTAAACCC GGGATGGGTC TGTCGAAAGC TAGCCAAGTC GCGCTGTTAT GGGAGGATTT GGCGCGCAAG CACCAAACCC ACCCGGGTGC CATGGCTGAT ATCTCAGGGT TTGACTGGTC CGTTCAGGAT TGGGAACTCT GGGCTGACGT ATCTATGAGG ATTGAGCTAG GCTCGTTTCC AGCGTTGATG GCGAAGGCAG CTATATCGCG GTTTTACTGC TTGATGAACG CTACCTTCCA ATTAACGAAT GGAGAGCTCT TAGCCCAGGA ACTGCCAGGA CTCATGAAGT CCGGGTCGTA CTGTACCTCC AGCTCCAACT CCCGCATTCG CTGCCTTATG GCTGAGCTCA TCGGCTCGCC TTGGTGTATC GCAATGGGAG ATGATTCTGT TGAGGGATGG GTCGATGATG CTCCCAGGAA ATATTCAGCA CTAGGCCATC TCTGTAAAGA GTATGAAGCG TGTCCAGTGC TCCCCAACGG AGATTTGAAG GAGGTGAGCT TTTGCTCCCA TCTCATCTCT AAGGGTCGAG CGGAACTGGA GACGTGGCCC AAGTGTCTGT TTCGATATCT CAGTGGACCA CATGATGTGG AAAGCTTGGA GATGGAGCTA AGCTCTTCTC GCCGCTGGGG CCAGATAGTC AGATACCTCC GCCGGATTGG CCGGGTCTCC GGAAATGATG GTGAGGAAAG GAGCAGCAAC GAAAGCCCCG CAACAACCAA AACCCAAGGC TCAGCAGCAG CCTGGGGGCC GCCGCAGGAG GCGTGGCCGG TCGATGGAGC CAGTCTCTCG ACCTTTGAAC CCTCCAGCAG CGGTTGGTTC CACCTTGAAG GCTGGTAGAG GCAGGACCGC TGGTGTGAGT GACTGGTTTG ATACCGGCAT GATCACCAGT TACCTAGGTG GTTTTCAGCG CACAGCTGGA ACTACCGACT CCCAGGTATT CATTGTGTCA CCCGCTGCAT TGGACCGTGT TGGAACCATA GCTAAGGCGT ATGCGTTGTG GAGACCTAAG CATTGGGAAA TCGTGTATCT CCCCAGATGT TCTACTCAGA CAGATGGGTC GATTGAAATG GGATTTCTCT TAGATTATGC AGATAGCGTC CCAACCAACA CCCGAACTAT GGCCTCCTCC ACCTCCTTCA CAACTTCAAA CGTGTGGGGA GGTGGGGATG GCAGCAGTTT GTTGCACACG TCCGTGAAGT CCATGGGCAA CGCTGTTACG AGCGCTCTTC CTTGTGATGA GTTCTCGAAC AAATGGTTTA AGTTATCTTG GAGCACTCCT GAGGAATCGG AGAACGCTCA TTTAACTGAC ACCTACGTTC CGGCGCGCTT CGTGGTGAGG TCTGACTTCC CAGTAGTCAC GGCTGACCAA CCCGGTCATC TCTGGCTCCG GTCCAGGATC TTGCTCAAGG GATCAGTTTC CCCTTCTACA AATTTGTAG

Products

Productorf2a
DescriptionVPg
MGCSVVGNCK SVMLMSRMSW SKLALLVSVA MAAAMTDSPP TLICMGILVS VVLNWIVCAV WQEASELILG VSLEATRPSP ARVIGEPVFD PRYGYVAPAI YDGKSFDVIL PISALSSAST RKETVEMAVE NSRLQPLESS QTPKSLVALY SQDLLSGWGS RIKGPDGQEY LLTALHVWET NISHLCKDGK KVPISGCPIV ASSADSDLDF VLVSVPRNAW SVLGVGVARL ELLKRRTVVT VYGGLDSKTT YCATGVAELE NPFRIVTKVT TTGGWSGSPL YHKDAIVGLH LGARPSAGVN RACNVAMAFR VVRKFVTVEN SELYPDQSSG PARELDAETY TERLEQGIAF TEYNISGITV KTSDREWTTA EALRVARYKP LGGGKAWGDS DDEDTQETAI RPLNYQRAGS LRGSPPLANL SSTRATSGVT KESSIPTACL SDPLESRVAG LEKLCAERFT EMFELLRQSS QNSKSSPGQA ADQKQKSDRS SSKPAGLRES KRPPICNWQS LTSKPSTRGP DPAPASAESP GVAKTSSQKS KRSRTRGKST SKQVPASPSP KSGSATSK
Productorf2a-orf2b
DescriptionVPg, serine protease, RNA dependent RNA polymerase
Modifications1212..1212:ribosomal_frameshift
MGCSVVGNCK SVMLMSRMSW SKLALLVSVA MAAAMTDSPP TLICMGILVS VVLNWIVCAV WQEASELILG VSLEATRPSP ARVIGEPVFD PRYGYVAPAI YDGKSFDVIL PISALSSAST RKETVEMAVE NSRLQPLESS QTPKSLVALY SQDLLSGWGS RIKGPDGQEY LLTALHVWET NISHLCKDGK KVPISGCPIV ASSADSDLDF VLVSVPRNAW SVLGVGVARL ELLKRRTVVT VYGGLDSKTT YCATGVAELE NPFRIVTKVT TTGGWSGSPL YHKDAIVGLH LGARPSAGVN RACNVAMAFR VVRKFVTVEN SELYPDQSSG PARELDAETY TERLEQGIAF TEYNISGITV KTSDREWTTA EALRVARYKP LGGGKAWGDS DDEDTQETAI RPLNLPAGGL PTGQSALGQL IEYAGYVWRD EGIINSNGMP FRSAGKSSCR FREAVCRAVH RDVRAAETEF PELKELAWPS RGSKAEIGSL LFQAGRFERV EAPANLQLAI TNLQAQYPRS RPRSCFRREP WCREDFVAEI EKIAHSGEIN LKASPGVPLA EIGVSNQQVI DVAWPLVCEA VVERLHALAS VDPRQHDWSP EELVKRGLCD PVRLFVKQEP HSRQKIEQGR FRLISSVSLV DQLVERMLFG PQNTTEIALW HSNPSKPGMG LSKASQVALL WEDLARKHQT HPGAMADISG FDWSVQDWEL WADVSMRIEL GSFPALMAKA AISRFYCLMN ATFQLTNGEL LAQELPGLMK SGSYCTSSSN SRIRCLMAEL IGSPWCIAMG DDSVEGWVDD APRKYSALGH LCKEYEACPV LPNGDLKEVS FCSHLISKGR AELETWPKCL FRYLSGPHDV ESLEMELSSS RRWGQIVRYL RRIGRVSGND GEERSSNESP ATTKTQGSAA AWGPPQEAWP VDGASLSTFE PSSSGWFHLE GW

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