Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200197"

Accession numberr200197 [export]
Locus namegag-pol
Recode1 namepol_m_vir_eiav
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismEquine infectious anemia virus [details]
AcronymEIAV

Sequence

GenBank IDsAF033820.1,U01866.1
SequenceRNA of 4801 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 1,406)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GTTGGCGCCC GAACAGGGAC CTGAGAGGGG CGCAGACCCT ACCTGTTGAA CCTGGCTGAT CGTAGGATCC CCGGGACAGC AGAGGAGAAC TTACAGAAGT CTTCTGGAGG TGTTCCTGGC CAGAACACAG GAGGACAGGT AAGATGGGAG ACCCTTTGAC ATGGAGCAAG GCGCTCAAGA AGTTAGAGAA GGTGACGGTA CAAGGGTCTC AGAAATTAAC TACTGGTAAC TGTAATTGGG CGCTAAGTCT AGTAGACTTA TTTCATGATA CCAACTTTGT AAAAGAAAAG GACTGGCAGC TGAGGGATGT CATTCCATTG CTGGAAGATG TAACTCAGAC GCTGTCAGGA CAAGAAAGAG AGGCCTTTGA AAGAACATGG TGGGCAATTT CTGCTGTAAA GATGGGCCTC CAGATTAATA ATGTAGTAGA TGGAAAGGCA TCATTCCAGC TCCTAAGAGC GAAATATGAA AAGAAGACTG CTAATAAAAA GCAGTCTGAG CCCTCTGAAG AATATCCAAT CATGATAGAT GGGGCTGGAA ACAGAAATTT TAGACCTCTA ACACCTAGAG GATATACTAC TTGGGTGAAT ACCATACAGA CAAATGGTCT ATTAAATGAA GCTAGTCAAA ACTTATTTGG GATATTATCA GTAGACTGTA CTTCTGAAGA AATGAATGCA TTTTTGGATG TGGTACCTGG CCAGGCAGGA CAAAAGCAGA TATTACTTGA TGCAATTGAT AAGATAGCAG ATGATTGGGA TAATAGACAT CCATTACCGA ATGCTCCACT GGTGGCACCA CCACAAGGGC CTATTCCCAT GACAGCAAGG TTTATTAGAG GTTTAGGAGT ACCTAGAGAA AGACAGATGG AGCCTGCTTT TGATCAGTTT AGGCAGACAT ATAGACAATG GATAATAGAA GCCATGTCAG AAGGCATCAA AGTGATGATT GGAAAACCTA AAGCTCAAAA TATTAGGCAA GGAGCTAAGG AACCTTACCC AGAATTTGTA GACAGACTAT TATCCCAAAT AAAAAGTGAG GGACATCCAC AAGAGATTTC AAAATTCTTG ACTGATACAC TGACTATTCA GAACGCAAAT GAGGAATGTA GAAATGCTAT GAGACATTTA AGACCAGAGG ATACATTAGA AGAGAAAATG TATGCTTGCA GAGACATTGG AACTACAAAA CAAAAGATGA TGTTATTGGC AAAAGCACTT CAGACTGGTC TTGCGGGCCC ATTTAAAGGT GGAGCCTTGA AAGGAGGGCC ACTAAAGGCA GCACAAACAT GTTATAACTG TGGGAAGCCA GGACATTTAT CTAGTCAATG TAGAGCACCT AAAGTCTGTT TTAAATGTAA ACAGCCTGGA CATTTCTCAA AGCAATGCAG AAGTGTTCCA AAAAACGGGA AGCAAGGGGC TCAAGGGAGG CCCCAGAAAC AAACTTTCCC GATACAACAG AAGAGTCAGC ACAACAAATC TGTTGTACAA GAGACTCCTC AGACTCAAAA TCTGTACCCA GATCTGAGCG AAATAAAAAA GGAATACAAT GTCAAGGAGA AGGATCAAGT AGAGGATCTC AACCTGGACA GTTTGTGGGA GTAACATATA ATCTAGAGAA AAGGCCTACT ACAATAGTAT TAATTAATGA TACTCCCTTA AATGTACTGT TAGACACAGG AGCAGATACT TCAGTGTTGA CTACTGCACA TTATAATAGG TTAAAATATA GAGGGAGAAA ATATCAAGGG ACGGGAATAA TAGGAGTGGG AGGAAATGTG GAAACATTTT CTACGCCTGT GACTATAAAG AAAAAGGGTA GACACATTAA GACAAGAATG CTAGTGGCAG ATATTCCAGT GACTATTTTG GGACGAGATA TTCTTCAGGA CTTAGGTGCA AAATTGGTTT TGGCACAGCT CTCCAAGGAA ATAAAATTTA GAAAAATAGA GTTAAAAGAG GGCACAATGG GGCCAAAAAT TCCTCAATGG CCACTCACTA AGGAGAAACT AGAAGGGGCC AAAGAGATAG TCCAAAGACT ATTGTCAGAG GGAAAAATAT CAGAAGCTAG TGACAATAAT CCTTATAATT CACCCATATT TGTAATAAAA AAGAGGTCTG GCAAATGGAG GTTATTACAA GATCTGAGAG AATTAAACAA AACAGTACAA GTAGGAACGG AAATATCCAG AGGATTGCCT CACCCGGGAG GATTAATTAA ATGTAAACAC ATGACTGTAT TAGATATTGG AGATGCATAT TTCACTATAC CCTTAGATCC AGAGTTTAGA CCATATACAG CTTTCACTAT TCCCTCCATT AATCATCAAG AACCAGATAA AAGATATGTG TGGAAATGTT TACCACAAGG ATTCGTGTTG AGCCCATATA TATATCAGAA AACATTACAG GAAATTTTAC AACCTTTTAG GGAAAGATAT CCTGAAGTAC AATTGTATCA ATATATGGAT GATTTGTTCA TGGGAAGTAA TGGTTCTAAA AAACAACACA AAGAGTTAAT CATAGAATTA AGGGCGATCT TACTGGAAAA GGGTTTTGAG ACACCAGATG ATAAATTACA AGAAGTGCCA CCTTATAGCT GGCTAGGTTA TCAACTTTGT CCTGAAAATT GGAAAGTACA AAAAATGCAA TTAGACATGG TAAAGAATCC AACCCTTAAT GATGTGCAAA AATTAATGGG GAATATAACA TGGATGAGCT CAGGGATCCC AGGGTTGACA GTAAAACACA TTGCAGCTAC TACTAAGGGA TGTTTAGAGT TGAATCAAAA AGTAATTTGG ACGGAAGAGG CACAAAAAGA GTTAGAAGAA AATAATGAGA AGATTAAAAA TGCTCAAGGG TTACAATATT ATAATCCAGA AGAAGAAATG TTATGTGAGG TTGAAATTAC AAAAAATTAT GAGGCAACTT ATGTTATAAA ACAATCACAA GGAATCCTAT GGGCAGGTAA AAAGATTATG AAGGCTAATA AGGGATGGTC AACAGTAAAA AATTTAATGT TATTGTTGCA ACATGTGGCA ACAGAAAGTA TTACTAGAGT AGGAAAATGT CCAACGTTTA AGGTACCATT TACCAAAGAG CAAGTAATGT GGGAAATGCA AAAAGGATGG TATTATTCTT GGCTCCCAGA AATAGTATAT ACACATCAAG TAGTTCATGA TGATTGGAGA ATGAAATTGG TAGAAGAACC TACATCAGGA ATAACAATAT ACACTGATGG GGGAAAACAA AATGGAGAAG GAATAGCAGC TTATGTGACC AGTAATGGGA GAACTAAACA GAAAAGGTTA GGACCTGTCA CTCATCAAGT TGCTGAAAGA ATGGCAATAC AAATGGCATT AGAGGATACC AGAGATAAAC AAGTAAATAT AGTAACTGAT AGTTATTATT GTTGGAAAAA TATTACAGAA GGATTAGGTT TAGAAGGACC ACAAAGTCCT TGGTGGCCTA TAATACAAAA TATACGAGAA AAAGAGATAG TTTATTTTGC TTGGGTACCT GGTCACAAAG GGATATATGG TAATCAATTG GCAGATGAAG CCGCAAAAAT AAAAGAAGAA ATCATGCTAG CATACCAAGG CACACAAATT AAAGAGAAAA GAGATGAAGA TGCAGGGTTT GACTTATGTG TTCCTTATGA CATCATGATA CCTGTATCTG ACACAAAAAT CATACCCACA GATGTAAAAA TTCAAGTTCC TCCTAATAGC TTTGGATGGG TCACTGGGAA ATCATCAATG GCAAAACAGG GGTTATTAAT TAATGGAGGA ATAATTGATG AAGGATATAC AGGAGAAATA CAAGTGATAT GTACTAATAT TGGAAAAAGT AATATTAAAT TAATAGAGGG ACAAAAATTT GCACAATTAA TTATACTACA GCATCACTCA AATTCCAGAC AGCCTTGGGA TGAAAATAAA ATATCTCAGA GAGGGGATAA AGGATTTGGA AGTACAGGAG TATTCTGGGT AGAAAATATT CAGGAAGCAC AAGATGAACA TGAGAATTGG CATACATCAC CAAAGATATT GGCAAGAAAT TATAAGATAC CATTGACTGT AGCAAAACAG ATAACTCAAG AATGTCCTCA TTGCACTAAG CAAGGATCAG GACCTGCAGG TTGTGTCATG AGATCTCCTA ATCATTGGCA GGCAGATTGC ACACATTTGG ACAATAAGAT AATATTGACT TTTGTAGAGT CAAATTCAGG ATACATACAT GCTACATTAT TGTCAAAAGA AAATGCATTA TGTACTTCAT TGGCTATTTT AGAATGGGCA AGATTGTTTT CACCAAAGTC CTTACACACA GATAACGGCA CTAATTTTGT GGCAGAACCA GTTGTAAATT TGTTGAAGTT CCTAAAGATA GCACATACCA CAGGAATACC ATATCATCCA GAAAGTCAGG GTATTGTAGA AAGGGCAAAT AGGACCTTGA AAGAGAAGAT TCAAAGTCAT AGAGACAACA CTCAAACACT GGAGGCAGCT TTACAACTTG CTCTCATTAC TTGTAACAAA GGGAGGGAAA GTATGGGAGG ACAGACACCA TGGGAAGTAT TTATCACTAA TCAAGCACAA GTAATACATG AGAAACTTTT ACTACAGCAA GCACAATCCT CCAAAAAATT TTGTTTTTAC AAAATCCCTG GTGAACATGA TTGGAAGGGA CCTACTAGGG TGCTGTGGAA GGGTGATGGT GCAGTAGTAG TTAATGATGA AGGAAAGGGA ATAATTGCTG TACCATTAAC CAGGACTAAG TTACTAATAA AACCAAATTG A

Products

Productgag
Descriptiongag capsid polyprotein
MGDPLTWSKA LKKLEKVTVQ GSQKLTTGNC NWALSLVDLF HDTNFVKEKD WQLRDVIPLL EDVTQTLSGQ EREAFERTWW AISAVKMGLQ INNVVDGKAS FQLLRAKYEK KTANKKQSEP SEEYPIMIDG AGNRNFRPLT PRGYTTWVNT IQTNGLLNEA SQNLFGILSV DCTSEEMNAF LDVVPGQAGQ KQILLDAIDK IADDWDNRHP LPNAPLVAPP QGPIPMTARF IRGLGVPRER QMEPAFDQFR QTYRQWIIEA MSEGIKVMIG KPKAQNIRQG AKEPYPEFVD RLLSQIKSEG HPQEISKFLT DTLTIQNANE ECRNAMRHLR PEDTLEEKMY ACRDIGTTKQ KMMLLAKALQ TGLAGPFKGG ALKGGPLKAA QTCYNCGKPG HLSSQCRAPK VCFKCKQPGH FSKQCRSVPK NGKQGAQGRP QKQTFPIQQK SQHNKSVVQE TPQTQNLYPD LSEIKKEYNV KEKDQVEDLN LDSLWE
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications1406..1406:ribosomal_frameshift
MGDPLTWSKA LKKLEKVTVQ GSQKLTTGNC NWALSLVDLF HDTNFVKEKD WQLRDVIPLL EDVTQTLSGQ EREAFERTWW AISAVKMGLQ INNVVDGKAS FQLLRAKYEK KTANKKQSEP SEEYPIMIDG AGNRNFRPLT PRGYTTWVNT IQTNGLLNEA SQNLFGILSV DCTSEEMNAF LDVVPGQAGQ KQILLDAIDK IADDWDNRHP LPNAPLVAPP QGPIPMTARF IRGLGVPRER QMEPAFDQFR QTYRQWIIEA MSEGIKVMIG KPKAQNIRQG AKEPYPEFVD RLLSQIKSEG HPQEISKFLT DTLTIQNANE ECRNAMRHLR PEDTLEEKMY ACRDIGTTKQ KMMLLAKALQ TGLAGPFKGG ALKGGPLKAA QTCYNCGKPG HLSSQCRAPK VCFKCKQPGH FSKQCRSVPK NREARGSREA PETNFPDTTE ESAQQICCTR DSSDSKSVPR SERNKKGIQC QGEGSSRGSQ PGQFVGVTYN LEKRPTTIVL INDTPLNVLL DTGADTSVLT TAHYNRLKYR GRKYQGTGII GVGGNVETFS TPVTIKKKGR HIKTRMLVAD IPVTILGRDI LQDLGAKLVL AQLSKEIKFR KIELKEGTMG PKIPQWPLTK EKLEGAKEIV QRLLSEGKIS EASDNNPYNS PIFVIKKRSG KWRLLQDLRE LNKTVQVGTE ISRGLPHPGG LIKCKHMTVL DIGDAYFTIP LDPEFRPYTA FTIPSINHQE PDKRYVWKCL PQGFVLSPYI YQKTLQEILQ PFRERYPEVQ LYQYMDDLFM GSNGSKKQHK ELIIELRAIL LEKGFETPDD KLQEVPPYSW LGYQLCPENW KVQKMQLDMV KNPTLNDVQK LMGNITWMSS GIPGLTVKHI AATTKGCLEL NQKVIWTEEA QKELEENNEK IKNAQGLQYY NPEEEMLCEV EITKNYEATY VIKQSQGILW AGKKIMKANK GWSTVKNLML LLQHVATESI TRVGKCPTFK VPFTKEQVMW EMQKGWYYSW LPEIVYTHQV VHDDWRMKLV EEPTSGITIY TDGGKQNGEG IAAYVTSNGR TKQKRLGPVT HQVAERMAIQ MALEDTRDKQ VNIVTDSYYC WKNITEGLGL EGPQSPWWPI IQNIREKEIV YFAWVPGHKG IYGNQLADEA AKIKEEIMLA YQGTQIKEKR DEDAGFDLCV PYDIMIPVSD TKIIPTDVKI QVPPNSFGWV TGKSSMAKQG LLINGGIIDE GYTGEIQVIC TNIGKSNIKL IEGQKFAQLI ILQHHSNSRQ PWDENKISQR GDKGFGSTGV FWVENIQEAQ DEHENWHTSP KILARNYKIP LTVAKQITQE CPHCTKQGSG PAGCVMRSPN HWQADCTHLD NKIILTFVES NSGYIHATLL SKENALCTSL AILEWARLFS PKSLHTDNGT NFVAEPVVNL LKFLKIAHTT GIPYHPESQG IVERANRTLK EKIQSHRDNT QTLEAALQLA LITCNKGRES MGGQTPWEVF ITNQAQVIHE KLLLQQAQSS KKFCFYKIPG EHDWKGPTRV LWKGDGAVVV NDEGKGIIAV PLTRTKLLIK PN

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