Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200199"

Accession numberr200199 [export]
Locus namegag-pol
Recode1 namepol_m_vir_giar
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismGiardia lamblia virus [details]
AcronymGLV

Sequence

GenBank IDsL13218.1
Sequenceds-RNA of 5978 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type-1 Frameshifting (position: 2,841)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GGAAGGAGTG CCAGGCCATT ACCTTCCGCC CCTGCCTAAC AAAACTGGCT CGCCAGAGGC GGGGGGGCGT GGTAGACGGT ATGTCTAGGT CCAGAGAAAG CGGCCGCTGT TAGGCTGCTA GACTTCGCCA CGCTTACACC ATTGAGAACA CATAGGTGGT GTAATATTAT GTGTTTGGCT GCGTGTGTCA CGAGCACGAT CTATGGGGGA ATCTAACCCA GGTGGTGTTG TGTATGATGA GGTACAAGCC CGTCAACACC ACAGGTGGAG AGGGACAGGA GTCTCATTTC CCCTCCAAAA AACAGCAGTG GTCCGCCCCT CATGCCCTAT GAAACATTAG GGGGCCGACA CTAGTGGGCA AGCCCGATGG TGTGGGGGAC TGGATATGGG AACCCCAGTC CGTTAAACCC GTACGGCTTC GCCAGCCTAC ACCGGGGGGG GCTTAATCCC CTTATTTTGG CACCTGAAAA TATTACTTTT GACACTTTAA ACACACACAA TGATCACGAG GAGACCCATG GAGAGTCTCC AGAGGTTCCT AAGGCCTCGA TCGCGCCTGC CGGGAGGCAG AATGTCCCGG TTCTCCAACA AAATCAAGAA AACGAAGATA ATCACGCGCT GGGCGGTAGC GAGGACGCCA AAGATGAGCG CGAAATACGA TTCTCAGCCA TAAAAACTCT CTACAATTAT TACTCAGAGG GTCCTTCGAC CCCAATTATG CCGCATTTAG TTAACAGGTT ACGTGGATTA GATGCCCTGG CCAAGATAGA CGCGACGCTG ACCAAGGTGG ATATGAACGC GGCCTACATA TTCGCCCTGA GACCGACTTT TCCGTATTCG TATGGGTATA AACAGCGCTT CAGTAACAGG AGATTAACCA CTAGTGCGCT TTGCTACGCA AGGACGGGTC TATCCTCATT TCTGACCGTC GACAAAACGT ACACATCTAA CTCTCCATTA AAAGGGGGCT CTAGAGGGTG GCCCATTTTC AACGTGGATG TTTCATCACA CGTGGCGGAG CCTCACATGA GGACATTGTC ACCTATCGGT CTTGAAGTAT TCAATCTGGC TACGTCTCAA TTTTCGAAAA CTCTATTAAC TGCATCATCG AAAGTCTTCA CGCAATCGCT CTACACTGCT GACATACTAT CGATCTTTGG TGAGGTGTTC CTGCCACACG TGATGCAACC GGTCTCAAAC TACACTCCAA TACTTGTGAG GGCACTATTG GCCTTGATCC ACATACTGGG GCCAGGATCT GGTAATTGCT CACTTTCATC GTCTATCTTC GAGAGCTCAA TTCCACAATT CCTTACGGTA AGTCATAGTA CGAACATGTC GAATAGAACG AGGTACTGCT TACATACGAG GTCTGCTTAC AAGGATATGT TCAGGAACGG TATCCCACCT CAGTCGACGT TGCCACCGAC GCTCGCGCCG GAGGGGTCCT CTGCTCGGGT TTTAATCCCA GAGGCCCTAG TGACCAGCCC TATGTTTCCA TGGTTACTTA TCTTAGTCTC GAGCGGCCCA CAGTTCTTCT TGTATTCAAA GGACGCTAGT ATTAATACCG TAGACATCGG TTCGAGGGGG AGGATTACAT CACCAATCCC TGACGTCGCC AAGCTTGATC TCCACAGACT CTGGAATCTC TTCCGTTTTG ATGGTTACCG CTACATCGAC GTGGTCATAG TGGGCGCGGA TAGAGATTAC GTGTGGCCCT ATCAAAATGG CGTGTATGTA CACGGCGGCA AGGGACCCAA TGGTACTGGC AACTACGGGA ACGCTGACGT TCATGACGGA ATAGGGACGA TATTTTCGTC TTTCAACAAC AATGTTAACG TGCAAACGTC CGACCTCATG CTGGGCCTAT TGACCCTGTG GAACCACATA ACGACTACGT ACGCTACTGA GGAGGAGGTC ACCATGGCGA TTAAGATTGC AGCGGCTTTT GCCCTCGTCT ACCCAGTACA GCCTATTGTC TACTCCGGTT GCCCGAAAGC TTTTCAGAGA CACACGTCAT ACTACCAGCC CTCATCGGAG AACTGCTACG CAACCGACAC GGCTGAAGTC AAGAGCGTGT GGGATACGGT CGAGCTTAGC GTACAGGTTA ATAACGCTAT GGTACTAGGT ATGACACTAC CGTTTGGCCA ACCTACACTT AGCAGTGCAC AATGGTATAA TAACATCGAT AAGGCCGAGA TCTCTATGTT TAAGGTCGGC AATCTACCGT TACAGAACCT CGATTATCTA TCTCTCGATA TGATGGAATT CTACGCTCCT ACGACAGGAC AACTGTACGA CATACGTAGT GATAACCTGA TCTTGAGCGC CCATAGGACG GTGAACCTCG GAATAGGCTA CACAGCTCTG GCAGATTTCT TCGCTTATCT AGCTTCAGTT CCTGCCCAGA GTTTTTACCA CGACAGGATG GTCACCTCAC CGATCTCAAA GCAGACGTAC TCCGTCTATG AACGTTTTAT TGAACGTTTT ATTGATGACT TCGTAGGCTG GGACAGATGT GACCTGTTCA ACCTTGATAC ATTGTTAGGT GCAAAACACA TAGCCGGGGT AGCCTCATCT CCAATCCCGT GGCACTGCTC GCTACAGAGA TGCCCACTAC CCATAATCAT GCATTACACA GGCCTCACTT TCGGCCAGGA GCATATAACA GTCAGGGACG TCGCCGGGGT TGAGGGCTTA CAGCAGATCG TCATGAGGGA CTTCCAGGGT CGTATCGTAG TAGAGCGCTT GGGCACAGCT GCACCATCTA GAATTGCAGT CAAATTAGAC TGGTCTAGGC TTAGTGCCTG GTACTCAGAC ACAACCTGCG CCATCCCTTT ATCCGATCGT GTGATGGAGA TCGTCAATTA CGCGGCAATA TGGGATCCTA CACAGGAAAG ACACGCACAG GTTTCGTGTA CACATACTTT AGCCCCAATT TCCTTTCGAG CTTTAACGTG TCTGAGCCTA TATTCAATAC GAGTATCAAC CTTACACCAC CTTATGACGA CACGAGCCAA GCTGTAATTC AAAATTTGTC CATGCCACAG ATGCTCAGCT TCGATCCCTA CTACGAGTCT ACGTTCTATG TGGTCTCCGC GGATAACGAG TGGATACCGA CTTCAGGGCC TGCTTGGAAG GTACCATATC TGGAAAACGT AGTTAAGCGG TCTGGCAGGC GCTTGCTGGC GGAGCTCAGG ATAGCATCCA ATAACGGGTC TGGAGACCGT ACCTTCTTGA CGACGTGTAA GACAAGAAAG GGAAGGCATT TTACCTACTT CTCTGCTGCT TTGGGGGGCA AGATCCTGGA ATTCGTATGC GCTCCACTGT CGAGTATCAG TCTCCAGGGC GGGCAAACGA TCTACGCTCC GATTCAGCTC CAAGACGTCA TACCAGTACG TAAAGAGGAT CCAGTGCCAG GGAGCATATA TGCAGTCTTT AAGTTCTTCT CAGAACCAAA GGCCTGGGAG GCACGTGCGC TTAAGTCCTA CAAAGTCAGG TTCCAAGATC TCCCAAGCCA CATAGTGATT AGTGAGTTGA AAGAGAGAGC GGCGAGAAGC TATATCGGGT CGAGGGGTTA TGTCGATACA GGTTTTAAGG CTTTGGACAT TTATATAGAT ATTCTTTCCC AAATGGAGCT GCCAAAGTAC ATACACGAGT TCTTAATTTT ACTCAGAGGC AAGGTGTGTG AAGTCTCGAG GTTGTACAAG AAGGAACAGG TATTCGTAAT ATTACTAACC GTATTCTCTG AGCTCACAGC CATAGTCCGC CATAGAGGTA ACAAGTCCAC GGGGTCGATG GGGAGGATGT GGACTTTGTT ATCAGACTTC GAGACCTTGC TTGGGAAGGT GAGCTATAAG AACCCGAGTA TCATTGAGGA GCAGGTTGTT CCCTGGCTAA CCTCAGACCC TATACCACGT ACCCCTGACT TCTACTCTAC ATATTTCAAG ACGGCTGTCC AGTTTATGCA CAGGACATTC GTTCCCGTCA CTCTCAGAAG TGCCCCTCCG TTAACATTTC ACGAGTACTG TGGGAGGCCG GAGCTCTGGG GAACCACGGG ATCCGGCTAC ATCGGCTATG GCAAGCGTAG TTTTAACAAA TGGTCGATCT ACGGAGCTTA TCCTACCGAG GAGATTTATC GGCTAGCACT CTATGGAGAT AATCCACCCC TCAAGCCGCT GGAAAAACCC GAACTTACGA AGGTACGTGC TGTAATCTCC GCCTCCCTCC AATCGTATAT ATTGATGTCT TACCTCGAGT ACATCATGGC AGACACCATA GTTGACAAAG CATTCACTAC AACTCTGATG AACGACAGGC AGCTAGAGAA CCTTGAGCGC CACATGATGA CCATGACCGG AGGAGTCAGG GTTCCAGTGG ACCAGTCCAA TTTTGATCGC CAGCCTGACT TGGTCCAAAT AGGCATCTGG CAACAGTTAC TGTTTCACCT GGCATCTGCG TCAGCTCCGT ACAGAGCCCG CGACAGTGTC TCATTAGTCA TATCACGTTT AGCTTCAACT ACGACTTTCC CAAACCTAAA GGTACGGATG TCGGACGGTG ACAAACGTGT GCTACACGGC CTCCCCTCGG GGTGGAAGTG GACCGCTCTG CTAGGGGCTC TCATCAATGT GACACAACTT TTAACCATGG CGGAATTGTC CAACACTCTG GCCTCGTTGA GGTCAACGGT GGTGCAGGGC GACGATATCG CTCTAAGTAT GACTGACCGG GAGCAGGCCA CACAGTTAGT TGACACTTAT GCACGTCAGG GGTTCGAGGT CAACCCGAAG AAGTTCTGGA TATCACCCGA CCGGGACGAA TTCCTTCGGA GGGTAGCAAC CCCTGGTATA GTCGCGGGGT ACCCAGCTAG AATGATGATT AAATTGTTAT ATCAGCTGAC GGAACCTGAA GAGCCCTCAC ACTACATCTC CATGTTGCCA AAGTTAGCGA AGGTGCCTAA CGTGGTCCAG GAGCATGTAA AGCCCCGGTC TGATGTGCCA TGGTCGGAGA CCGTCGAAGA ACTTGATTGG CGCGAAGCTC TCGCTATACT GAGGCATAGG CCTGCCCGTA CGTCAGAACT GGTGACTCAA TGGCTGCAAC TGATTGGTAG GTTTACAGCT GCTCATCCAG ATAAGCGAGC CTTAACTCTT CTCTACCGTT GGTTCGTGAG AGATTTGACA CATGCTACAA AAATAAAAAA AAGAAATCTT CTGGTCCTGT TACAGCAGCC GGGCTTCTGG GGGGGTTATT CCCAGAGCCT GGTTGGCTTG TTAAGGACCA CTCACCTCGC AGATATGATA GTTAGCGAAC TAGACATAGG ACTGCCAGGT CCTCGGGCCA CGTCTAGTCG CTTTGGGACA TCCCCTACCT CACTGGCCCC GCACTACCTC ACTCTGATAG TTCCGAGTAG CGTGCATGTG CAGTCGCAAA AGGAATTGGA TTTGTGGGGG CTGTGCAGAT CCAGTAAATA TGCTAAGCAC TATTCAAACA TATTTCGATA CTACAAACTG ACTCTTCCTA CGTTGGTGCT TTGGGCCCAA CGGCTAGGTG ATAAACACGT CACCGATTTC ATTAGATCTG TCACCCTGGG TTCAGAAATA CCAAAATATG ACCCGCATGC GCGTCTATTC ACAAGTAACG GGGTGTCAGT AGGAATGTTA ATAAGGATAA GAGTACGACA TTTTACCCAC AGAGTGCTTC GAAGAGAGAC ACCTAAGTGT ATCCCCGTAA TCGTCGGGCT ATATCGGGAG CAGACACTAT CCGTTCCGGA GAGTGTTCGT CTATCGGAAC CTGACAAAAT ACTATTAAGC CTACAACGGG CGTCGGGTTA CTCACTGAAT CTAGTTAAGA AGATATTACA GATCACTAGG AAACCAGTGG ACCATCCGGT GGACGCGAGG TTCTCACAGG CATTCCCTAA CAACTGGAGC GACTTGGCTA GAACGGCTGG CACCTTTTTG TTGACTGTAC CGGCTTAG

Products

Productgag
Descriptiongag capsid polyprotein
MVWGTGYGNP SPLNPYGFAS LHRGGLNPLI LAPENITFDT LNTHNDHEET HGESPEVPKA SIAPAGRQNV PVLQQNQENE DNHALGGSED AKDEREIRFS AIKTLYNYYS EGPSTPIMPH LVNRLRGLDA LAKIDATLTK VDMNAAYIFA LRPTFPYSYG YKQRFSNRRL TTSALCYART GLSSFLTVDK TYTSNSPLKG GSRGWPIFNV DVSSHVAEPH MRTLSPIGLE VFNLATSQFS KTLLTASSKV FTQSLYTADI LSIFGEVFLP HVMQPVSNYT PILVRALLAL IHILGPGSGN CSLSSSIFES SIPQFLTVSH STNMSNRTRY CLHTRSAYKD MFRNGIPPQS TLPPTLAPEG SSARVLIPEA LVTSPMFPWL LILVSSGPQF FLYSKDASIN TVDIGSRGRI TSPIPDVAKL DLHRLWNLFR FDGYRYIDVV IVGADRDYVW PYQNGVYVHG GKGPNGTGNY GNADVHDGIG TIFSSFNNNV NVQTSDLMLG LLTLWNHITT TYATEEEVTM AIKIAAAFAL VYPVQPIVYS GCPKAFQRHT SYYQPSSENC YATDTAEVKS VWDTVELSVQ VNNAMVLGMT LPFGQPTLSS AQWYNNIDKA EISMFKVGNL PLQNLDYLSL DMMEFYAPTT GQLYDIRSDN LILSAHRTVN LGIGYTALAD FFAYLASVPA QSFYHDRMVT SPISKQTYSV YERFIERFID DFVGWDRCDL FNLDTLLGAK HIAGVASSPI PWHCSLQRCP LPIIMHYTGL TFGQEHITVR DVAGVEGLQQ IVMRDFQGRI VVERLGTAAP SRIAVKLDWS RLSAWYSDTT CAIPLSDRVM EIVNYAAIWD PTQERHAQVS CTHTLAPISF RALTCLSLYS IRVSTLHHLM TTRAKL
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications2841..2841:ribosomal_frameshift
MVWGTGYGNP SPLNPYGFAS LHRGGLNPLI LAPENITFDT LNTHNDHEET HGESPEVPKA SIAPAGRQNV PVLQQNQENE DNHALGGSED AKDEREIRFS AIKTLYNYYS EGPSTPIMPH LVNRLRGLDA LAKIDATLTK VDMNAAYIFA LRPTFPYSYG YKQRFSNRRL TTSALCYART GLSSFLTVDK TYTSNSPLKG GSRGWPIFNV DVSSHVAEPH MRTLSPIGLE VFNLATSQFS KTLLTASSKV FTQSLYTADI LSIFGEVFLP HVMQPVSNYT PILVRALLAL IHILGPGSGN CSLSSSIFES SIPQFLTVSH STNMSNRTRY CLHTRSAYKD MFRNGIPPQS TLPPTLAPEG SSARVLIPEA LVTSPMFPWL LILVSSGPQF FLYSKDASIN TVDIGSRGRI TSPIPDVAKL DLHRLWNLFR FDGYRYIDVV IVGADRDYVW PYQNGVYVHG GKGPNGTGNY GNADVHDGIG TIFSSFNNNV NVQTSDLMLG LLTLWNHITT TYATEEEVTM AIKIAAAFAL VYPVQPIVYS GCPKAFQRHT SYYQPSSENC YATDTAEVKS VWDTVELSVQ VNNAMVLGMT LPFGQPTLSS AQWYNNIDKA EISMFKVGNL PLQNLDYLSL DMMEFYAPTT GQLYDIRSDN LILSAHRTVN LGIGYTALAD FFAYLASVPA QSFYHDRMVT SPISKQTYSV YERFIERFID DFVGWDRCDL FNLDTLLGAK HIAGVASSPI PWHCSLQRCP LPIIMHYTGL TFGQEHITVR DVAGVEGLQQ IVMRDFQGRI VVERLGTAAP SRIAVKLDWS RLSAWYSDTT CAIPLIRSCD GDRQLRGNMG SYTGKTRTGF VYTYFSPNFL SSFNVSEPIF NTSINLTPPY DDTSQAVIQN LSMPQMLSFD PYYESTFYVV SADNEWIPTS GPAWKVPYLE NVVKRSGRRL LAELRIASNN GSGDRTFLTT CKTRKGRHFT YFSAALGGKI LEFVCAPLSS ISLQGGQTIY APIQLQDVIP VRKEDPVPGS IYAVFKFFSE PKAWEARALK SYKVRFQDLP SHIVISELKE RAARSYIGSR GYVDTGFKAL DIYIDILSQM ELPKYIHEFL ILLRGKVCEV SRLYKKEQVF VILLTVFSEL TAIVRHRGNK STGSMGRMWT LLSDFETLLG KVSYKNPSII EEQVVPWLTS DPIPRTPDFY STYFKTAVQF MHRTFVPVTL RSAPPLTFHE YCGRPELWGT TGSGYIGYGK RSFNKWSIYG AYPTEEIYRL ALYGDNPPLK PLEKPELTKV RAVISASLQS YILMSYLEYI MADTIVDKAF TTTLMNDRQL ENLERHMMTM TGGVRVPVDQ SNFDRQPDLV QIGIWQQLLF HLASASAPYR ARDSVSLVIS RLASTTTFPN LKVRMSDGDK RVLHGLPSGW KWTALLGALI NVTQLLTMAE LSNTLASLRS TVVQGDDIAL SMTDREQATQ LVDTYARQGF EVNPKKFWIS PDRDEFLRRV ATPGIVAGYP ARMMIKLLYQ LTEPEEPSHY ISMLPKLAKV PNVVQEHVKP RSDVPWSETV EELDWREALA ILRHRPARTS ELVTQWLQLI GRFTAAHPDK RALTLLYRWF VRDLTHATKI KKRNLLVLLQ QPGFWGGYSQ SLVGLLRTTH LADMIVSELD IGLPGPRATS SRFGTSPTSL APHYLTLIVP SSVHVQSQKE LDLWGLCRSS KYAKHYSNIF RYYKLTLPTL VLWAQRLGDK HVTDFIRSVT LGSEIPKYDP HARLFTSNGV SVGMLIRIRV RHFTHRVLRR ETPKCIPVIV GLYREQTLSV PESVRLSEPD KILLSLQRAS GYSLNLVKKI LQITRKPVDH PVDARFSQAF PNNWSDLART AGTFLLTVPA

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