Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200206"

Accession numberr200206 [export]
Locus namegag-pro-pol
Recode1 namepol_m_vir_htlv1
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismPrimate T-lymphotropic virus 1 [details]

Sequence

VariantHuman T-lymphotropic virus 1
GenBank IDsAF033817.1,D13784.1
SequenceDNA of 4608 nucleotides [sequence]
OrganisationStemloop (2) [see structure] [see structure]

Recoding events

Event type-1 Frameshifting (position: 1,490)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
Event type-1 Frameshifting (position: 2,017)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
CGTCTTTGTT TCGTTTTCTG TTCTGCGCCG TTACAGATCG AAAGTTCCAC CCCTTTCCCT TTCATTCACG ACTGACTGCC GGCTTGGCCC ACGGCCAAGT ACCGGCAACT CTGCTGGCTC GGAGCCAGCG ACAGCCCATT CTATAGCACT CTCCAGGAGA GAAATTTAGT ACACAGTTGG GGGCTCGTCC GGGATTCGAG CGCCCCTTTA TTCCCTAGGC AATGGGCCAA ATCTTTTCCC GTAGCGCTAG CCCTATTCCG CGGCCGCCCC GGGGGCTGGC CGCTCATCAC TGGCTTAACT TCCTCCAGGC GGCATATCGC CTAGAACCCG GTCCCTCCAG TTACGATTTC CACCAGTTAA AAAAATTTCT TAAAATAGCT TTAGAAACAC CGGTCTGGAT CTGCCCCATT AACTACTCCC TCCTAGCCAG CCTACTCCCA AAAGGATACC CCGGCCGGGT GAATGAAATT TTACACATAC TCATCCAAAC CCAAGCCCAG ATCCCGTCCC GCCCCGCGCC GCCGCCGCCG TCATCCTCCA CCCACGACCC CCCGGATTCT GACCCACAAA TCCCCCCTCC CTATGTTGAG CCTACAGCCC CCCAAGTCCT TCCAGTCATG CACCCACATG GTGCCCCTCC CAACCACCGC CCATGGCAAA TGAAAGACCT ACAGGCCATT AAGCAAGAAG TCTCCCAAGC GGCCCCTGGA AGCCCCCAGT TTATGCAGAC CATCCGGCTT GCGGTGCAGC AGTTTGACCC CACTGCCAAA GACCTCCAAG ACCTCCTGCA GTACCTTTGC TCCTCCCTCG TGGCTTCCCT CCATCACCAG CAGCTAGATA GCCTTATATC AGAGGCCGAA ACTCGAGGTA TTACAGGTTA TAACCCCTTA GCCGGTCCCC TCCGTGTCCA AGCCAACAAT CCACAACAAC AAGGATTAAG GCGAGAATAC CAGCAACTCT GGCTCGCCGC CTTCGCCGCC CTGCCAGGGA GTGCCAAAGA CCCTTCCTGG GCCTCTATCC TCCAAGGCCT GGAGGAGCCT TACCACGCCT TCGTAGAACG CCTCAACATA GCTCTTGACA ATGGGCTGCC AGAAGGCACG CCCAAAGACC CCATTTTACG TTCCTTAGCC TACTCTAATG CAAACAAAGA ATGCCAAAAA TTACTACAGG CCCGAGGGCA CACTAATAGC CCTCTAGGAG ATATGTTGCG GGCTTGTCAG GCCTGGACCC CCAAAGACAA AACCAAAGTG TTAGTTGTCC AGCCTAAAAA ACCCCCCCCA AATCAGCCGT GCTTCCGGTG CGGGAAAGCA GGCCACTGGA GTCGGGACTG CACTCAGCCT CGTCCTCCCC CTGGGCCATG CCCCCTATGT CAAGATCCAA CTCACTGGAA GCGAGACTGC CCCCGCCTAA AGCCCACTAT CCCAGAACCA GAGCCAGAGG AGGATGCCCT CCTATTAGAT CTCCCCGCCG ACATCCCACA CCCAAAAAAC TCCATAGGGG GGGAGGTTTA ACCTCCCCCC CCACATTACA GCAAGTCCTT CCTAACCAAG ACCCAACATC TATTCTGCCA GTTATACCGT TAGATCCCGC CCGTCGGCCC GTAATTAAAG CCCAGATTGA CACCCAGACC AGCCACCCAA AGACTATCGA AGCTCTACTA GATACAGGAG CAGACATGAC AGTCCTTCCG ATAGCCTTGT TCTCAAGTAA TACTCCCCTC AAAAACACAT CCGTGTTAGG GGCAGGGGGC CAAACCCAAG ATCACTTTAA GCTCACCTCC CTTCCTGTGC TAATACGCCT CCCTTTCCGG ACGACGCCTA TTGTTTTAAC ATCTTGCCTA GTTGATACCA AAAACAACTG GGCCATCATA GGTCGTGATG CCTTACAACA ATGCCAAGGC GTCCTGTACC TCCCTGAGGC AAAAAGGCCG CCTGTAATCT TGCCAATACA GGCGCCAGCT GTCCTTGGGC TAGAACACCT CCCAAGGCCC CCCGAAATCA GCCAGTTCCC TTTAAACCAG AACGCCTCCA GGCCTTGCAA CACTTGGTCC GGAAGGCCCT GGAGGCAGGC CATATCGAAC CCTACACCGG GCCAGGAAAT AACCCAGTAT TCCCAGTTAA AAAAGCCAAT GGAACCTGGC GATTCATCCA CGACCTGCGG GCCACTAACT CTCTAACCAT AGATCTCTCA TCATCTTCCC CCGGGCCCCC TGACTTGTCC AGCCTGCCAA CTACACTAGC CCACTTACAA ACTATAGACC TTAAAGACGC CTTTTTCCAA ATCCCCCTAC CTAAACAGTT CCAGCCCTAC TTTGCTTTCA CTGTCCCACA GCAGTGTAAC TACGGCCCCG GCACTAGATA CGCCTGGAGA GTACTACCCC AAGGGTTTAA AAATAGTCCC ACCCTGTTCG AAATGCAGCT GGCCCATATC CTGCAGCCCA TTCGGCAAGC CTTCCCCCAA TGCACTATTC TTCAGTACAT GGATGACATT CTCCTGGCAA GCCCCTCCCA TGCGGACCTG CAACTACTCT CAGAGGCCAC AATGGCTTCC CTAATCTCCC ATGGGTTGCC TGTGTCCGAA AACAAAACCC AGCAAACCCC TGGAACAATT AAGTTCCTAG GGCAAATAAT TTCACCTAAT CACCTCACTT ATGATGCAGT CCCCAAGGTA CCTATACGGT CCCGCTGGGC GCTACCTGAA CTTCAAGCCC TACTTGGCGA GATTCAGTGG GTCTCCAAAG GAACTCCTAC CTTACGCCAG CCCCTTCACA GTCTCTACTG TGCCTTACAA AGGCATACTG ATCCCCGAGA CCAAATATAT TTAAATCCTT CTCAAGTTCA ATCATTAGTG CAGCTGCGGC AGGCCCTGTC ACAGAACTGC CGCAGTAGAC TAGTCCAAAC CCTGCCCCTC CTAGGGGCTA TTATGCTGAC CCTCACTGGC ACCACCACTG TGGTGTTCCA GTCCAAGCAG CAGTGGCCAC TTGTCTGGCT ACATGCCCCC CTACCCCACA CTAGCCAGTG CCCCTGGGGG CAGCTACTTG CCTCAGCTGT GTTATTACTC GACAAATACA CCTTGCAATC CTATGGACTA CTCTGCCAAA CCATACATCA TAACATCTCC ACCCAAACCT TCAACCAATT CATTCAAACA TCTGACCACC CCAGTGTTCC TATCTTACTC CACCACAGTC ACCGATTCAA AAATTTAGGT GCCCAGACTG GAGAACTTTG GAACACTTTT CTTAAAACAA CTGCCCCATT GGCTCCTGTG AAAGCCCTTA TGCCAGTGTT TACTCTTTCC CCTGTGATCA TAAACACCGC CCCTTGCCTG TTTTCAGACG GATCCACCTC CCAGGCAGCC TATATTCTCT GGGACAAGCA TATATTGTCA CAAAGATCAT TCCCCCTTCC GCCACCGCAC AAGTCGGCCC AACGGGCCGA ACTTCTCGGA CTTTTGCATG GCCTCTCCAG CGCCCGTTCG TGGCGCTGTC TCAACATATT TCTAGACTCC AAGTATCTTT ATCATTACCT TCGGACCCTT GCCCTAGGCA CCTTCCAAGG CAGGTCCTCT CAGGCCCCCT TTCAGGCCCT CCTGCCCCGC TTACTATCGC GTAAGGTCGT CTATTTGCAC CACGTTCGCA GCCATACCAA TCTACCTGAT CCCATCTCCA GGCTCAACGC TCTCACAGAT GCCCTACTAA TCACCCCTGT CCTGCAGCTC TCTCCTGCAG ACCTACACAG TTTCACCCAT TGCGGACAGA CGGCCCTCAC ACTGCAAGGG GCAACCACAA CTGAGGCCTC CAATATCCTG CGCTCTTGCC ACGCCTGCCG CAAAAATAAC CCACAACATC AGATGCCTCA AGGACACATC CGCCGTGGCC TACTCCCTAA CCACATCTGG CAAGGCGACA TTACCCATTT CAAATATAAA AATACACTGT ATCGCCTTCA TGTATGGGTA GACACCTTTT CAGGAGCCAT CTCAGCTACC CAAAAGAGAA AAGAAACAAG CTCAGAAGCT ATTTCCTCTT TGCTCCAGGC CATTGCCTAT CTAGGCAAGC CTAGCTACAT AAACACAGAC AATGGCCCTG CCTATATTTC CCAAGACTTC CTCAATATGT GTACCTCCCT TGCTATTCGC CATACTACCC ATGTCCCCTA CAATCCAACC AGCTCCGGAC TTGTAGAACG CTCTAATGGC ATTCTTAAAA CCCTATTATA TAAGTACTTT ACTGACAAAC CCGACCTACC TATGGATAAT GCTCTATCCA TAGCCCTATG GACAATCAAC CACCTAAATG TATTAACCAA CTGCCACAAA ACCCGATGGC AGCTTCACCA CTCCCCCCGA CTCCAGCCGA TCCCAGAGAC ACATTCCCTC AGCAATAAAC AAACCCATTG GTATTATTTC AAGCTTCCTG GTCTTAATAG CCGCCAGTGG AAAGGACCAC AGGAGGCTCT TCAAGAAGCT GCCGGCGCTG CTCTCATCCC GGTAAGCGCT AGTTCTGCCC AGTGGATCCC GTGGAGGCTC CTCAAGCGAG CTGCATGCCC AAGACCCGTC GGAGGCCCCG CCGATCCCAA AGAAAAAGAC CACCAACACC ATGGGTAA

Products

Productgag
Descriptiongag capsid polyprotein
MGQIFSRSAS PIPRPPRGLA AHHWLNFLQA AYRLEPGPSS YDFHQLKKFL KIALETPVWI CPINYSLLAS LLPKGYPGRV NEILHILIQT QAQIPSRPAP PPPSSSTHDP PDSDPQIPPP YVEPTAPQVL PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKDLQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITGY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWASILQGL EEPYHAFVER LNIALDNGLP EGTPKDPILR SLAYSNANKE CQKLLQARGH TNSPLGDMLR ACQAWTPKDK TKVLVVQPKK PPPNQPCFRC GKAGHWSRDC TQPRPPPGPC PLCQDPTHWK RDCPRLKPTI PEPEPEEDAL LLDLPADIPH PKNSIGGEV
Productgag-pro
Descriptiongag capsid polyprotein, protease
Modifications1490..1490:ribosomal_frameshift
MGQIFSRSAS PIPRPPRGLA AHHWLNFLQA AYRLEPGPSS YDFHQLKKFL KIALETPVWI CPINYSLLAS LLPKGYPGRV NEILHILIQT QAQIPSRPAP PPPSSSTHDP PDSDPQIPPP YVEPTAPQVL PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKDLQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITGY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWASILQGL EEPYHAFVER LNIALDNGLP EGTPKDPILR SLAYSNANKE CQKLLQARGH TNSPLGDMLR ACQAWTPKDK TKVLVVQPKK PPPNQPCFRC GKAGHWSRDC TQPRPPPGPC PLCQDPTHWK RDCPRLKPTI PEPEPEEDAL LLDLPADIPH PKNLHRGGGL TSPPTLQQVL PNQDPTSILP VIPLDPARRP VIKAQIDTQT SHPKTIEALL DTGADMTVLP IALFSSNTPL KNTSVLGAGG QTQDHFKLTS LPVLIRLPFR TTPIVLTSCL VDTKNNWAII GRDALQQCQG VLYLPEAKRP PVILPIQAPA VLGLEHLPRP PEISQFPLNQ NASRPCNTWS GRPWRQAISN PTPGQEITQY SQLKKPMEPG DSSTTCGPLT L
Productgag-pro-pol
Descriptiongag capsid polyprotein, protease, RNA polymerase
Modifications1490..1490:ribosomal_frameshift|2017..2017:ribosomal_frameshift
MGQIFSRSAS PIPRPPRGLA AHHWLNFLQA AYRLEPGPSS YDFHQLKKFL KIALETPVWI CPINYSLLAS LLPKGYPGRV NEILHILIQT QAQIPSRPAP PPPSSSTHDP PDSDPQIPPP YVEPTAPQVL PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKDLQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITGY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWASILQGL EEPYHAFVER LNIALDNGLP EGTPKDPILR SLAYSNANKE CQKLLQARGH TNSPLGDMLR ACQAWTPKDK TKVLVVQPKK PPPNQPCFRC GKAGHWSRDC TQPRPPPGPC PLCQDPTHWK RDCPRLKPTI PEPEPEEDAL LLDLPADIPH PKNLHRGGGL TSPPTLQQVL PNQDPTSILP VIPLDPARRP VIKAQIDTQT SHPKTIEALL DTGADMTVLP IALFSSNTPL KNTSVLGAGG QTQDHFKLTS LPVLIRLPFR TTPIVLTSCL VDTKNNWAII GRDALQQCQG VLYLPEAKRP PVILPIQAPA VLGLEHLPRP PEISQFPLNP ERLQALQHLV RKALEAGHIE PYTGPGNNPV FPVKKANGTW RFIHDLRATN SLTIDLSSSS PGPPDLSSLP TTLAHLQTID LKDAFFQIPL PKQFQPYFAF TVPQQCNYGP GTRYAWRVLP QGFKNSPTLF EMQLAHILQP IRQAFPQCTI LQYMDDILLA SPSHADLQLL SEATMASLIS HGLPVSENKT QQTPGTIKFL GQIISPNHLT YDAVPKVPIR SRWALPELQA LLGEIQWVSK GTPTLRQPLH SLYCALQRHT DPRDQIYLNP SQVQSLVQLR QALSQNCRSR LVQTLPLLGA IMLTLTGTTT VVFQSKQQWP LVWLHAPLPH TSQCPWGQLL ASAVLLLDKY TLQSYGLLCQ TIHHNISTQT FNQFIQTSDH PSVPILLHHS HRFKNLGAQT GELWNTFLKT TAPLAPVKAL MPVFTLSPVI INTAPCLFSD GSTSQAAYIL WDKHILSQRS FPLPPPHKSA QRAELLGLLH GLSSARSWRC LNIFLDSKYL YHYLRTLALG TFQGRSSQAP FQALLPRLLS RKVVYLHHVR SHTNLPDPIS RLNALTDALL ITPVLQLSPA DLHSFTHCGQ TALTLQGATT TEASNILRSC HACRKNNPQH QMPQGHIRRG LLPNHIWQGD ITHFKYKNTL YRLHVWVDTF SGAISATQKR KETSSEAISS LLQAIAYLGK PSYINTDNGP AYISQDFLNM CTSLAIRHTT HVPYNPTSSG LVERSNGILK TLLYKYFTDK PDLPMDNALS IALWTINHLN VLTNCHKTRW QLHHSPRLQP IPETHSLSNK QTHWYYFKLP GLNSRQWKGP QEALQEAAGA ALIPVSASSA QWIPWRLLKR AACPRPVGGP ADPKEKDHQH HG*

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