Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200211"

Accession numberr200211 [export]
Locus namegag-pro-pol
Recode1 namepol_m_vir_mmtv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismMouse mammary tumor virus [details]
AcronymMMTV

Sequence

GenBank IDsAF033807.1,M15122.1
Sequencess-RNA of 5578 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]
Stemloop (1) [see structure]

Recoding events

Event type-1 Frameshifting (position: 2,082)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
Event type-1 Frameshifting (position: 2,891)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GCAACAGTCC TAACATTCAC CTCTCGTGTG TTTGTGTCTG TTCGCCATCC CGTCTCCGCT CGTCACTTAT CCTTCACTTT CCAGAGGGTC CCCCCGCAGA CCCCGGTGAC CCTCAGGTCG GCCGACTGCG GCAGCTGGCG CCCGAACAGG GACCCTCGGA TAAGTGACCC TTGTCTCTAT TTCTACTATT TTGTGTTCGT CTTGTTTTGT CTCTATCTTA TCTGGCTATT ATCACAAGAG CGGAACGGAC TCACCACAGG GAACTGCAGT CTCGCCTACA GAGAAGAGGT AGGTTACGGT GAGCCATTGG AAATGGGGGT CTCGGGATCA AAAGGGCAGA AACTCTTTGT TTCTGTTCTA CAAAGACTCC TCTCAGAGAG GGGTCTTCAT GTGAAAGAGA GCAGTGCAAT AGAGTTTTAT CAGTTCCTAA TAAAGGTCTC TCCTTGGTTT CCCGAAGAAG GAGGATTAAA TTTACAAGAT TGGAAAAGGG TGGGAAGAGA GATGAAGAGG TACGCAGCAG AACATGGGAC GGATAGTATA CCAAAGCAGG CTTACCCCAT TTGGCTTCAG TTGAGAGAGA TACTGACAGA GCAATCAGAC TTGGTTTTGT TATCTGCAGA AGCCAAGTCC GTGACTGAAG AGGAATTAGA GGAAGGTTTA ACCGGACTAC TATCGACAAG TTCACAGGAA AAAACTTATG GGACTAGGGG AACAGCATAT GCAGAAATAG ATACAGAGGT AGACAAGCTG TCTGAACATA TTTATGATGA ACCATATGAA GAAAAGGAGA AGGCAGATAA AAATGAGGAA AAGGACCATG TTAGAAAAAT AAAGAAGGTA GTACAAAGAA AAGAAAATAG TGAGGGTAAG AGAAAAGAGA AGGATTCAAA GGCCTTTTTA GCCACAGATT GGAACGATGA TGACCTGTCC CCTGAGGATT GGGACGATTT AGAGGAACAA GCGGCACATT ATCATGATGA TGATGAGCTA ATCCTTCCAG TAAAAAGGAA GGTGGTTAAG AAGAAACCTC AGGCACTCAG AAGGAAACCC CTGCCTCCGG TGGGTTTTGC AGGAGCGATG GCAGAGGCCA GGGAAAAAGG AGATTTGACT TTTACGTTTC CTGTAGTTTT TATGGGAGAG AGTGATGAAG ATGACACGCC TGTTTGGGAA CCGCTGCCAT TGAAAACCTT AAAGGAATTG CAATCGGCAG TTAGGACCAT GGGACCATCT GCTCCCTACA CCCTGCAGGT GGTAGACATG GTGGCTAGTC AATGGCTCAC CCCGAGTGAC TGGCACCAAA CAGCCAGAGC TACCTTGTCT CCTGGAGACT ATGTTTTATG GAGAACTGAA TATGAAGAGA AAAGTAAAGA AATGGTACAA AAGGCTGCAG GCAAGCGAAA GGGCAAGGTC TCTCTTGATA TGTTACTGGG GACTGGCCAA TTCCTGTCCC CTTCTTCTCA GATAAAATTG TCTAAGGATG TCTTAAAAGA TGTCACCACA AATGCTGTGT TAGCATGGAG GGCCATTCCG CCTCCTGGAG TTAAAAAGAC TGTATTAGCA GGATTAAAAC AGGGAAATGA AGAGTCTTAT GAGACTTTCA TTTCAAGGCT CGAGGAAGCT GTTTACCGAA TGATGCCCAG AGGGGAAGGG TCGGATATAT TGATCAAACA ATTGGCGTGG GAGAATGCAA ATTCATTGTG TCAGGATCTC ATCCGCCCAA TACGTAAAAC AGGAACTATA CAGGATTATA TTCGTGCTTG TCTGGACGCT TCTCCCGCAG TTGTTCAGGG TATGGCATAT GCAGCAGCCA TGAGAGGACA AAAGTATTCT ACCTTTGTAA AGCAAACATA TGGTGGGGGA AAAGGAGGTC AAGGAGCAGA AGGGCCAGTT TGTTTTTCCT GTGGTAAGAC AGGACACATC AGAAAAGACT GTAAGGATGA AAAGGGCTCA AAAAGGGCCC CTCCTGGGCT CTGCCCCAGA TGTAAGAAAG GCTATCACTG GAAGAGTGAG TGTAAATCTA AATTTGACAA AGATGGGAAT CCACTTCCTC CCTTGGAAAC TAATGCTGAA AATTCAAAAA ACTTGTAAAG GGGCAGTCCC CTAGCCCCGC TCAAAAGGGG GATGGAGTTA AGGGCTCAGG ATTAAATCCT GAAGCCCCAC CTTTCACAAT ACATGATTTG CCTCGAGGCA CCCCTGGAAG TGCAGGTTTA GACCTGTCAT CACAGAAGGA TTTGATCCTC TCTCTAGAAG ATGGAGTATC ATTGGTACCC ACCTTAGTGA AAGGCACCCT CCCTGAAGGG ACTACTGGAC TAATAATAGG TAGAAGTTCT AATTATAAAA AGGGACTTGA GGTTTTACCA GGAGTCATTG ACTCCGATTT CCAAGGAGAA ATCAAGGTTA TGGTTAAGGC CGCAAAAAAT GCGGTCATCA TTCACAAAGG AGAAAGAATA GCACAACTGC TGTTGCTGCC ATATTTAAAA TTACCCAATC CTGTAATCAA GGAAGAACGA GGCTCAGAAG GCTTCGGATC AACAAGTCAT GTGCATTGGG TGCAGGAAAT AAGTGACTCC AGACCCATGC TTCACATTTA CTTAAATGGA AGAAGATTCC TCGGTCTCTT GGATACCGGG GCAGATAAAA CTTGCATAGC AGGCAGAGAC TGGCCAGCTA ATTGGCCCAT TCACCAAACT GAGAGTTCTC TTCAAGGTTT AGGCATGGCC TGTGGGGTGG CGCGTAGTAG TCAGCCACTC CGTTGGCAAC ATGAGGATAA ATCAGGAATT ATACATCCTT TTGTGATCCC TACACTGCCT TTCACCTTAT GGGGAAGAGA TATTATGAAA GATATAAAGG TCAGATTGAT GACAGACTCA CCAGATGATT CACAGGATTT ATGATAGGGG CCATTGAGAG CAATCTCTTT GCAGACCAAA TATCTTGGAA GTCAGACCAG CCTGTATGGC TTAATCAATG GCCCCTTAAA CAAGAAAAGT TACAGGCTTT ACAACAGTTA GTGACAGAAC AATTACAACT GGGCCACTTA GAAGAGAGCA ATAGCCCTTG GAATACGCCT GTTTTTGTCA TTAAAAAGAA GTCAGGAAAA TGGAGACTGT TACAAGACCT ACGTGCAGTT AATGCTACAA TGCACGATAT GGGAGCATTA CAACCCGGCT TGCCGTCCCC TGTAGCAGTC CCTAAAGGAT GGGAAATAAT CATAATAGAT CTACAAGATT GCTTTTTTAA TATAAAACTG CATCCTGAAG ATTGTAAAAG ATTTGCTTTT AGTGTGCCCT CCCCTAATTT TAAGAGACCT TATCAAAGAT TCCAATGGAA AGTTTTGCCC CAGGGTATGA AAAATAGCCC TACTTTATGT CAAAAATTTG TGGACAAAGC TATATTGACT GTAAGGGATA AATACCAAGA CTCATATATT GTGCATTACA TGGATGACAT TCTTTTGGCA CACCCATCAA GATCCATTGT CGATGAAATA CTTACTTCCA TGATACAGGC CCTTAACAAA CATGGCCTTG TAGTATCCAC AGAGAAGATT CAAAAATATG ATAATCTCAA ATATTTGGGA ACTCATATAC AGGGTGATTC AGTGTCTTAT CAAAAATTAC AGATTAGGAC AGATAAATTA AGAACCTTAA ATGATTTCCA AAAGCTATTA GGAAATATTA ATTGGATACG TCCTTTCTTA AAATTAACTA CGGGAGAGTT AAAACCTCTC TTTGAAATTC TTAATGGAGA TTCTAATCCG ATCTCAACAA GAAAACTTAC TCCTGAGGCA TGCAAAGCTC TTCAATTAAT GAATGAGAGA CTATCTACCG CTCGGGTAAA GAGGCTAGAT TTATCACAGC CTTGGTCTCT ATGTATATTA AAGACTGAAT ATACCCCCAC AGCATGCCTC TGGCAGGATG GAGTTGTAGA ATGGATACAT TTGCCTCATA TTTCACCAAA GGTGATTACT CCTTATGATA TCTTTTGTAC ACAACTTATT ATTAAGGGCC GACACCGCTC TAAAGAATTA TTTAGTAAAG ACCCTGATTA TATTGTTGTG CCCTACACCA AAGTTCAATT TGATCTCCTA TTACAAGAAA AGGAAGATTG GCCTATTTCT TTATTAGGGT TCTTGGGAGA GGTTCATTTC CATCTTCCAA AAGACCCTTT GCTTACATTT ACCCTACAAA CTGCCATTAT TTTTCCTCAC ATGACCTCTA CCACACCACT AGAGAAAGGA ATTGTGATTT TTACAGACGG GTCAGCAAAT GGCCGTTCGG TAACATATAT ACAAGGAAGG GAGCCTATAA TTAAAGAAAA TACACAAAAC ACAGCCCAAC AGGCTGAAAT TGTGGCAGTC ATTACAGCCT TTGAGGAAGT GAGTCAACCC TTTAATTTGT ATACTGATTC TAAATATGTG ACAGGGTTGT TTCCCGAAAT CGAAACTGCA ACTTTGTCAC CCAGAACAAA AATTTACACA GAACTGAAAC ATTTACAAAG GTTAATCCAC AAGAGACAAG AAAAATTTTA CATTGGTCAT ATCAGAGGAC ACACTGGACT TCCCGGTCCT TTGGCACAGG GAAATGCCTA TGCAGATTCT TTAACAAGAA TTCTGACCGC TTTAGAGTCA GCTCAAGAAA GCCACGCACT ACATCATCAA AATGCCGCGG CGCTTAGGTT TCAGTTTCAC ATCACTCGTG AACAAGCGCG AGAAATAGTA AAATTATGTC CCAATTGCCC CGACTGGGGG CACGCGCCGC AATTAGGGGT AAACCCCAGG GGCCTTAAGC CCCGAGTTCT ATGGCAAATG GATGTTACTC ATGTTTCAGA ATTTGGAAAA TTAAAATATG TACATGTGAC AGTGGATACT TATTCTCATT TTACTTTCGC TACCGCCCGA ACGGGCGAAG CAACCAAGGA TGTGTTACAA CACTTGGCTC AAAGCTTTGC ATACATGGGC ATTCCTCAAA AAATAAAAAC AGATAATGCC CCTGCATATG TGTCTCGTTC AATACAAGAA TTTCTGGCCA GATGGAAAAT ATCTCACGTC ACGGGGATCC CCTACAATCC CCAAGGACAG GCCATTGTTG AACGAACGCA CCAAAATATA AAGGCACAGC TTAATAAACT TCAAAAGGCT GGAAAATACT ATACACCCCA TCATCTGTTG GCACACGCTC TTTTTGTGCT GAATCATGTA AATATGGACA ATCAAGGCCA TACAGCGGCC GAAAGACATT GGGGTCCAAT CTCAGCCGAT CCAAAACCTA TGGTCATGTG GAAAGACCTT CTCACAGGGT CCTGGAAAGG ACCCGATGTC CTAATAACAG CCGGACGAGG CTATGCTTGT GTTTTTCCAC AGGATGCCGA AACACCAATC TGGGTCCCCG ACCGATTCAT CCGACCTTTT ACTGAGCGGA AAGAAGCAAC GCCCACACCT GGCACTGCGG AGAAAACGCC GCCGCGAGAT GAGAAAGATC AACAGGAAAG TCCCAAGAAT GAATCTAGTC CCCATCAAAG AGAAGACGGC TTGGCAACAT CTGCAGGCGT TGATCTCCGA AGCGGAGGAG GTCCTTAA

Products

Productgag
Descriptiongag capsid polyprotein
MGVSGSKGQK LFVSVLQRLL SERGLHVKES SAIEFYQFLI KVSPWFPEEG GLNLQDWKRV GREMKRYAAE HGTDSIPKQA YPIWLQLREI LTEQSDLVLL SAEAKSVTEE ELEEGLTGLL STSSQEKTYG TRGTAYAEID TEVDKLSEHI YDEPYEEKEK ADKNEEKDHV RKIKKVVQRK ENSEGKRKEK DSKAFLATDW NDDDLSPEDW DDLEEQAAHY HDDDELILPV KRKVVKKKPQ ALRRKPLPPV GFAGAMAEAR EKGDLTFTFP VVFMGESDED DTPVWEPLPL KTLKELQSAV RTMGPSAPYT LQVVDMVASQ WLTPSDWHQT ARATLSPGDY VLWRTEYEEK SKEMVQKAAG KRKGKVSLDM LLGTGQFLSP SSQIKLSKDV LKDVTTNAVL AWRAIPPPGV KKTVLAGLKQ GNEESYETFI SRLEEAVYRM MPRGEGSDIL IKQLAWENAN SLCQDLIRPI RKTGTIQDYI RACLDASPAV VQGMAYAAAM RGQKYSTFVK QTYGGGKGGQ GAEGPVCFSC GKTGHIRKDC KDEKGSKRAP PGLCPRCKKG YHWKSECKSK FDKDGNPLPP LETNAENSKN L
Productgag-pro
Descriptiongag capsid polyprotein, protease
Modifications2082..2082:ribosomal_frameshift
MGVSGSKGQK LFVSVLQRLL SERGLHVKES SAIEFYQFLI KVSPWFPEEG GLNLQDWKRV GREMKRYAAE HGTDSIPKQA YPIWLQLREI LTEQSDLVLL SAEAKSVTEE ELEEGLTGLL STSSQEKTYG TRGTAYAEID TEVDKLSEHI YDEPYEEKEK ADKNEEKDHV RKIKKVVQRK ENSEGKRKEK DSKAFLATDW NDDDLSPEDW DDLEEQAAHY HDDDELILPV KRKVVKKKPQ ALRRKPLPPV GFAGAMAEAR EKGDLTFTFP VVFMGESDED DTPVWEPLPL KTLKELQSAV RTMGPSAPYT LQVVDMVASQ WLTPSDWHQT ARATLSPGDY VLWRTEYEEK SKEMVQKAAG KRKGKVSLDM LLGTGQFLSP SSQIKLSKDV LKDVTTNAVL AWRAIPPPGV KKTVLAGLKQ GNEESYETFI SRLEEAVYRM MPRGEGSDIL IKQLAWENAN SLCQDLIRPI RKTGTIQDYI RACLDASPAV VQGMAYAAAM RGQKYSTFVK QTYGGGKGGQ GAEGPVCFSC GKTGHIRKDC KDEKGSKRAP PGLCPRCKKG YHWKSECKSK FDKDGNPLPP LETNAENSKN LVKGQSPSPA QKGDGVKGSG LNPEAPPFTI HDLPRGTPGS AGLDLSSQKD LILSLEDGVS LVPTLVKGTL PEGTTGLIIG RSSNYKKGLE VLPGVIDSDF QGEIKVMVKA AKNAVIIHKG ERIAQLLLLP YLKLPNPVIK EERGSEGFGS TSHVHWVQEI SDSRPMLHIY LNGRRFLGLL DTGADKTCIA GRDWPANWPI HQTESSLQGL GMACGVARSS QPLRWQHEDK SGIIHPFVIP TLPFTLWGRD IMKDIKVRLM TDSPDDSQDL
Productgag-pro-pol
Descriptiongag capsid polyprotein, protease, RNA polymerase
Modifications2082..2082:ribosomal_frameshift|2891..2891:ribosomal_frameshift
MGVSGSKGQK LFVSVLQRLL SERGLHVKES SAIEFYQFLI KVSPWFPEEG GLNLQDWKRV GREMKRYAAE HGTDSIPKQA YPIWLQLREI LTEQSDLVLL SAEAKSVTEE ELEEGLTGLL STSSQEKTYG TRGTAYAEID TEVDKLSEHI YDEPYEEKEK ADKNEEKDHV RKIKKVVQRK ENSEGKRKEK DSKAFLATDW NDDDLSPEDW DDLEEQAAHY HDDDELILPV KRKVVKKKPQ ALRRKPLPPV GFAGAMAEAR EKGDLTFTFP VVFMGESDED DTPVWEPLPL KTLKELQSAV RTMGPSAPYT LQVVDMVASQ WLTPSDWHQT ARATLSPGDY VLWRTEYEEK SKEMVQKAAG KRKGKVSLDM LLGTGQFLSP SSQIKLSKDV LKDVTTNAVL AWRAIPPPGV KKTVLAGLKQ GNEESYETFI SRLEEAVYRM MPRGEGSDIL IKQLAWENAN SLCQDLIRPI RKTGTIQDYI RACLDASPAV VQGMAYAAAM RGQKYSTFVK QTYGGGKGGQ GAEGPVCFSC GKTGHIRKDC KDEKGSKRAP PGLCPRCKKG YHWKSECKSK FDKDGNPLPP LETNAENSKN LVKGQSPSPA QKGDGVKGSG LNPEAPPFTI HDLPRGTPGS AGLDLSSQKD LILSLEDGVS LVPTLVKGTL PEGTTGLIIG RSSNYKKGLE VLPGVIDSDF QGEIKVMVKA AKNAVIIHKG ERIAQLLLLP YLKLPNPVIK EERGSEGFGS TSHVHWVQEI SDSRPMLHIY LNGRRFLGLL DTGADKTCIA GRDWPANWPI HQTESSLQGL GMACGVARSS QPLRWQHEDK SGIIHPFVIP TLPFTLWGRD IMKDIKVRLM TDSPDDSQDL MIGAIESNLF ADQISWKSDQ PVWLNQWPLK QEKLQALQQL VTEQLQLGHL EESNSPWNTP VFVIKKKSGK WRLLQDLRAV NATMHDMGAL QPGLPSPVAV PKGWEIIIID LQDCFFNIKL HPEDCKRFAF SVPSPNFKRP YQRFQWKVLP QGMKNSPTLC QKFVDKAILT VRDKYQDSYI VHYMDDILLA HPSRSIVDEI LTSMIQALNK HGLVVSTEKI QKYDNLKYLG THIQGDSVSY QKLQIRTDKL RTLNDFQKLL GNINWIRPFL KLTTGELKPL FEILNGDSNP ISTRKLTPEA CKALQLMNER LSTARVKRLD LSQPWSLCIL KTEYTPTACL WQDGVVEWIH LPHISPKVIT PYDIFCTQLI IKGRHRSKEL FSKDPDYIVV PYTKVQFDLL LQEKEDWPIS LLGFLGEVHF HLPKDPLLTF TLQTAIIFPH MTSTTPLEKG IVIFTDGSAN GRSVTYIQGR EPIIKENTQN TAQQAEIVAV ITAFEEVSQP FNLYTDSKYV TGLFPEIETA TLSPRTKIYT ELKHLQRLIH KRQEKFYIGH IRGHTGLPGP LAQGNAYADS LTRILTALES AQESHALHHQ NAAALRFQFH ITREQAREIV KLCPNCPDWG HAPQLGVNPR GLKPRVLWQM DVTHVSEFGK LKYVHVTVDT YSHFTFATAR TGEATKDVLQ HLAQSFAYMG IPQKIKTDNA PAYVSRSIQE FLARWKISHV TGIPYNPQGQ AIVERTHQNI KAQLNKLQKA GKYYTPHHLL AHALFVLNHV NMDNQGHTAA ERHWGPISAD PKPMVMWKDL LTGSWKGPDV LITAGRGYAC VFPQDAETPI WVPDRFIRPF TERKEATPTP GTAEKTPPRD EKDQQESPKN ESSPHQREDG LATSAGVDLR SGGGP*

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