Recode v. 2.0 / Database of translational recoding events.
Details for "r200212"
| Accession number | r200212 [export] |
| Locus name | gag-pro-pol |
| Recode1 name | pol_m_vir_mpmv |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Mason-Pfizer monkey virus [details] |
| Acronym | MPMV |
Sequence
Recoding events
| Event type | -1 Frameshifting (position: 1,963) |
| Description | production of fusion protein and set the ratio between two protein products. this is the part of the mRNA |
| Event type | -1 Frameshifting (position: 2,871) |
| Description | production of fusion protein and set the ratio between two protein products. this is the part of the mRNA |
ACGTGGCGCC CAACGTGGGG CTGGATACGA GGGAATCCTG TGAGGAAGAG AGCGCGTAAC ACGGCCGGCA
GTCAAAGTGA AAGAAAAACC TTCCAGCTGC CGCGGGAACC TGCCGCGTCG GCAATAAAGG TAAGCGTTGC
GTTCGAATAT GGGACAAGAA TTAAGCCAAC ATGAACTTTA TGTAGAACAG TTAAAAAAGG CTCTAAAGAC
ACGGGGAGTA AAGGTTAAGG GTAATGATTT ACTCAAATTC TTTGATTTTG TAAAGGATAC CTGCCCTTGG
TTCCCACAAG AGGGAACAAT AGACATAAAA AGATGGCGCA GGGTAGGAGA TTGTTTTCAG GATTATTATA
ACACTTTTGG CCCGGAAAAG ATACCAGTAA CTGCCTTCTC CTACTGGAAT CTTATCAAAG ATTTAATAGA
TAAAAAGGAG GCTGACCCAC AAGTAATGGC TGCGGTCACC CAGACAGAAA AAATATTAAA AGTTAGTTCA
CAAACAGATC TCAGGGACAA ATCACAAAAT AAGGAAATGG ATCTCATCTC TCTTGAAAGT GATGATGAGG
AAGCCAAGGC CCCCTCAGAG AAAATATCAA TGCCCAATAA AAGTCCTAAA AAATATCCAG CTATGTTAAC
ATCACAAAAT AATAATATGG ACAAAGACCC TGATTCGTCA GAGGTGGATT GGGATGGCTT AAAGGACGAG
GCAGCAAGGT ATCATAACCC TGATTGGCCT CCTTTCCTCT CTCGTCCACC CCCCTATAAT GGGACAACTG
CTACAGCCCC TGCTGTGATG GCGGTAGTCA ATCCTAAAGA GGAACTTAAA GAAAAAATTT CTCAATTAGA
GGAGCAGATA AAATTAGAGG AGTTACACCA GTCCCTAATT ATTCGGTTAC AAAAACTAAA AACAGGAAGT
GAGAGGGTAA CTAGTTCAGG CAATATGGAG AGTCACTCTC GTACGCCCAA ACGGCCTGGA CAGCACCTTC
CAATAGGAAA ATACCTCATT AACAAAAATA CAGAAGAATA TCCTTCCAAG GATATTTTCC CAGTAACGGA
GACTATGGAT GGACAAGGTC AGGCCTGGAG ACATCATAAT GGGTTTGACT TTACTGTTAT AAAAGAACTA
AAAACTGCTG TTTCCCAATA CGGAGCTACT GCTCCATATA CTTTGGCCAT AGTAGAATCC ATTGCTGATA
ATTGGCTTAC TCCAGCTGAC TGGAATACGC TCGTTAGAGC AGTCCTCTCA GGGGGAGACC ACTTAATTTG
GAAGTCTGAA TTTTTTGAAA ATTGTAGGGA CACAGCAAAA AGAAATCAAC AGGCAGGAAA TGGCTGGGAC
TTTGACATGT TAACAGGCTC TGGTAACTAT GCCAATACTG ATGCACAAAT GCAGTATGAT CCAGGACTGT
TTGCTCAAAT TCAGGCAGCC GCCACAAAAG CCTGGAGAAA ACTCCCTGTT AAAGGGGACC CAGGTGCTTC
ACTCACCGGG GTCAAACAAG GACCTGACGA GCCATTCGCA GATTTTGTAC ATAGACTCAT AACAACAGCT
GGCAGAATTT TCGGAAACGC CGAGGCAGGT GTAGATTATG TTAAACAACT AGCCTATGAA AATGCTAACC
CAGCCTGTCA AGCAGCAATT CGTCCTTACC GAAAGAAAAC AGATCTAACA GGATATATTC GCCTTTGTTC
AGATATTGGG CCCTCTTATC AGCAGGGTTT GGCAATGGCT GCCGCCTTTA GCGGACAGAC CGTAAAAGAT
TTTCTTAACA ATAAAAACAA AGATAGAGGA GGGTGCTTTA AGTGTGGCAA AAGAGGACAT TTTGCAAAAG
ATTGCCGTGA TCATTCAAAC AAAAATCCAG AATTGAAAGT GCCAGGCTTG TGCCCCAGAT GTAAAAGAGG
AAAACACTGG GCTAATGAAT GCAAATCCAA GACTGATAGT CAAGGAAATC CCTTACCACC CCATCAGGGA
AACGGGATGA GGGGCCAGCC CCAGGCCCCG AAGCAAGCCT ATGGGGCAGT CAGCTTTGTT CCAGCCAGCA
GCAACAATCC ATTTCAAAAC TTAATAGAGC CTCCCCAGGA AGTGCAGGAC TGGACCTCTG TTCCACCACC
CACACAGTAT TAACCCCTGA AATGGGGCCC CAAACTTTAG CTACTGGAGT ATATGGACCT TTGCCCCCTA
ATACGTTTGG GTTAATACTA GGCAGAGGCA GTACCACAGT AAAAGGTTTA CTAATTTACC CAGGAGTCAT
TGATAATGAT TATACAGGGG AATTCAAAAT AATGGCCAAG GCTATTTCTA GTATCATCAC TATTCCTCAA
GGAGAACGGA TTGCACAACT AATCTTGTTA CCCTTACTCC GAACAGCTCA TAAAATACAA CACCCTTATA
GAGGAAACAA AAATTTCGGG TCCTCAGATA TTTTTTGGGT ACAGCCAATA ACTAATCAAA AACCCTCCTT
AGTACTGTGG CTAGACGGTA AAGCATTTAC AGGGTTAATA GATACTGGAG CGGATGTCAC TATTATCAAA
CAAGAAGATT GGCCATCCCA TTGGCCTACC ACAGAAACCT TGACTAATCT GAGAGGAATA GGACAAAGTA
ATAACCCCAG GCAAAGTTCA AAATACCTTA CTTGGAAAGA CAAAGAAAAT AACTCAGGCC TTATCAAGCC
ATTTGTCATC CCTAACTTAC CGGTTAATCT TTGGGGCCGA GATTTGCTTT CCCAAATGAA AATTATGATG
TGCAGTCCTA ATGATATTGT CACTGCTCAA ATGTTAGCTC AAGGATACAG CCCAGGAAAA GGACTAGGAA
AAAGAGAAGA TGGAATCTTA CAACCCATCC CAAATTCAGG ACAACTTAAC AGAAAAGGAT TTGGAAATTT
TTAGCTGCGG CCGTTGACAT ACTTGCACCC CAGAGGTATG CTGACCCCAT TACATGGAAG TCAGATGAGC
CTGTTTGGGT TGATCAATGG CCCCTAACTC AAGAAAAACT TGCTGCTGCC CAACAGTTAG TGCAAGAACA
ATTACAGGCA GGGCATATTA TAGAAAGTAA TTCTCCCTGG AATACACCTA TATTTGTCAT AAAAAAGAAG
TCTGGTAAAT GGAGGCTTTT GCAAGATTTA AGGGCGGTAA ATGCCACCAT GGTATTAATG GGAGCTCTCC
AACCTGGGCT GCCCTCACCA GTGGCTATTC CTCAGGGATA TTTTAAAATA GTCATTGATC TTAAAGATTG
TTTTTTTACT ATCCCCCTTC AGCCCGTTGA TCAAAAGCGA TTTGCTTTTA GTCTCCCGTC TACCAACTTT
AAACAACCAA TAAAACGTTA TCAATGGAAA GTGTTGCCTC AAGGCATGGC CAATAGTCCT ACCTTGTGTC
AAAAATATGT AGCTGCTGCT ATAGAGCCAA TCAGAAAATC TTGGGCACAA ATGTACATTA TACACTATAT
GGATGACATT CTAATAGCAG GAAAGATTGG CGAACAAGTT TTGCAGTGTT TTGCTCAACT TAAACAAGCA
TTGACAACTA CTGGGTTACA AATAGCTCCA GAAAAGGTAC AGCTACAAGA TCCATATACC TACCTTGGGT
TTCAACTTAA TGGTCCCAAA ATTACCAATC ATAAGGCAGT TATTCGTAGA GATAAGTTAC AAACCCTTAA
TGATTTTCAA AAACTCTTGG GAGATATCAA TTGGCTTAGA CCCTATTTAC ACCTCACTAC AGGAGATCTA
AAACCTCTTT TTGATATCCT AAAAGGGGAT TCTAATCCTA ACTCACCCAG ATTTTTATCT GAAGCAGCCC
TTACGTCTCT TAAAAAGGTA GAAACAGCTA TTGCTGAACA ATTTGTTACA CAAATAGATT ATACACAGCC
ATTGACCCTT TTAATTTTTA ATACTACACT GACACCTACT GGCCTCTTCT GGCAAAATAA TCCTGTCATG
TGGATTCACT TGCCTGCATC GCCAAAAAAG GTATTGTTCC CCTATTATGA TGCTATAGCA GATCTTATTA
TCCTTGGAAG GGACAACAGT AAAAAATATT TTGGACTTGA ACCATCTACT ATTATACAAC CCTATTCTAA
ATCTCAAATC CATTGGTTAA TGCAAAACAC AGAAACATGG CCAATTGCCT GCGCTTCCTA TGCAGGCAAC
ATTGATAACC ATTATCCACC CAATAAACTT ATTCAATTTT GCAAACTCCA TGCAGTTGTT TTTCCCCGAA
TCATTAGTAA AACTCCTCTA GACAATGCCT TACTGGTATT CACTGATGGA TCCTCTACCG GCATAGCCGC
ATACACTTTT GAAAAGACCA CTGTCAAGTT TAAAACCTCC CATACGTCAG CCCAATTAGT AGAATTACAA
GCCCTAATTG CAGTGTTATC GGCCTTTCCT CAACGGGCCC TCAATATTTA TACAGATAGT GCCTACTTAG
CTCATTCTAT ACCTCTACTT GAGACAGTAT CGCAAATCAA ACATATCTCA GACACAGCAA AATTATTTTT
ACAGTGCCAA CAATTAATAT ACAACAGGTC TATACCTTTT TATTTAGGAC ATATCAGGGC CCATTCAGGA
TTACCAGGAC CTTTATCTCA AGGTAATCAC ATAACTGATT TGGCAACCAA AGTTGTCGCC ACCACTCTTA
CCACAAATTT AACAGAGGCA CAAGCTGCTC ATGCCTTACA TCACTTAAAC GCTCAGTCCC TAAGGTTAAT
GTTTAAAATT ACTAGAGAAC AGGCTAGACA AATTGTTAAA CAGTGTCCCA CATGTGTAAC ATACTTGCCA
ATTCCTCATT TTGGAGTTAA TCCAAAAGGA TTGATACCCA ATATGCTATG GCAAATGGAT GTCACTCATT
ATTCTGAATT CGGTAAATTA AAATATGTTC ATGTGTCCAT AGATACATTT AGTGGATTTC TTGTAGCCAC
CTTACAAACA GGAGAAGCTA CCAAACATGT TATTGCCCAT CTACTACATT GCTTCTCTAT TATTGGTCAA
CCTATTCACA TTAAAACAGA CAATGGCCCT GGATACACCT CATCTAGCTT TCGTGCCTTC TGTTCCAAAT
TACACATCAA ACACACCTTT GGTATTCCTT ACAATCCTCA GGGTCAAGGT ATTGTCGAAA GAGCACATCT
CTCCTTAAAA AATACTCTTG AAAAAATAAA AAAGGGGGAA TGGTACCCCA CACAGGGGTC TCCCAGGAAT
ATTCTCAATC ATGCACTCTT TATTTTAAAT TTTTTAAACC TTGATGCTCA AAATAAATCA GCCGCTGACC
GATTTTGGCA TACTAACTCT AAAAGAGAAT ATGCCATGGT CAAGTGGAAA GACCCATTAG ACAATTCGTG
GCATGGGCCT GATCCCGTAT TAATCTGGGG CAGAGGTTCA GTCTGCGTAT ACTCTCAAAC TCATGATGCA
GCCAGATGGC TACCAGAACG GTTGGTAAGG CAAGTGTCTA ATGTTACTCA ATCCAGGGAG TGA
Products
| Product | gag |
| Description | gag capsid polyprotein |
MGQELSQHEL YVEQLKKALK TRGVKVKGND LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKIPVTAF SYWNLIKDLI DKKEADPQVM AAVTQTEKIL KVSSQTDLRD KSQNKEMDLI SLESDDEEAK
APSEKISMPN KSPKKYPAML TSQNNNMDKD PDSSEVDWDG LKDEAARYHN PDWPPFLSRP PPYNGTTATA
PAVMAVVNPK EELKEKISQL EEQIKLEELH QSLIIRLQKL KTGSERVTSS GNMESHSRTP KRPGQHLPIG
KYLINKNTEE YPSKDIFPVT ETMDGQGQAW RHHNGFDFTV IKELKTAVSQ YGATAPYTLA IVESIADNWL
TPADWNTLVR AVLSGGDHLI WKSEFFENCR DTAKRNQQAG NGWDFDMLTG SGNYANTDAQ MQYDPGLFAQ
IQAAATKAWR KLPVKGDPGA SLTGVKQGPD EPFADFVHRL ITTAGRIFGN AEAGVDYVKQ LAYENANPAC
QAAIRPYRKK TDLTGYIRLC SDIGPSYQQG LAMAAAFSGQ TVKDFLNNKN KDRGGCFKCG KRGHFAKDCR
DHSNKNPELK VPGLCPRCKR GKHWANECKS KTDSQGNPLP PHQGNGMRGQ PQAPKQAYGA VSFVPASSNN
PFQNLIEPPQ EVQDWTSVPP PTQY
| Product | gag-pro |
| Description | gag capsid polyprotein, protease |
| Modifications | 1963..1963:ribosomal_frameshift |
MGQELSQHEL YVEQLKKALK TRGVKVKGND LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKIPVTAF SYWNLIKDLI DKKEADPQVM AAVTQTEKIL KVSSQTDLRD KSQNKEMDLI SLESDDEEAK
APSEKISMPN KSPKKYPAML TSQNNNMDKD PDSSEVDWDG LKDEAARYHN PDWPPFLSRP PPYNGTTATA
PAVMAVVNPK EELKEKISQL EEQIKLEELH QSLIIRLQKL KTGSERVTSS GNMESHSRTP KRPGQHLPIG
KYLINKNTEE YPSKDIFPVT ETMDGQGQAW RHHNGFDFTV IKELKTAVSQ YGATAPYTLA IVESIADNWL
TPADWNTLVR AVLSGGDHLI WKSEFFENCR DTAKRNQQAG NGWDFDMLTG SGNYANTDAQ MQYDPGLFAQ
IQAAATKAWR KLPVKGDPGA SLTGVKQGPD EPFADFVHRL ITTAGRIFGN AEAGVDYVKQ LAYENANPAC
QAAIRPYRKK TDLTGYIRLC SDIGPSYQQG LAMAAAFSGQ TVKDFLNNKN KDRGGCFKCG KRGHFAKDCR
DHSNKNPELK VPGLCPRCKR GKHWANECKS KTDSQGNPLP PHQGNRDEGP APGPEASLWG SQLCSSQQQQ
SISKLNRASP GSAGLDLCST THTVLTPEMG PQTLATGVYG PLPPNTFGLI LGRGSTTVKG LLIYPGVIDN
DYTGEFKIMA KAISSIITIP QGERIAQLIL LPLLRTAHKI QHPYRGNKNF GSSDIFWVQP ITNQKPSLVL
WLDGKAFTGL IDTGADVTII KQEDWPSHWP TTETLTNLRG IGQSNNPRQS SKYLTWKDKE NNSGLIKPFV
IPNLPVNLWG RDLLSQMKIM MCSPNDIVTA QMLAQGYSPG KGLGKREDGI LQPIPNSGQL NRKGFGNF
| Product | gag-pro-pol |
| Description | gag capsid polyprotein, protease, RNA polymerase |
| Modifications | 1963..1963:ribosomal_frameshift|2871..2871:ribosomal_frameshift |
MGQELSQHEL YVEQLKKALK TRGVKVKGND LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKIPVTAF SYWNLIKDLI DKKEADPQVM AAVTQTEKIL KVSSQTDLRD KSQNKEMDLI SLESDDEEAK
APSEKISMPN KSPKKYPAML TSQNNNMDKD PDSSEVDWDG LKDEAARYHN PDWPPFLSRP PPYNGTTATA
PAVMAVVNPK EELKEKISQL EEQIKLEELH QSLIIRLQKL KTGSERVTSS GNMESHSRTP KRPGQHLPIG
KYLINKNTEE YPSKDIFPVT ETMDGQGQAW RHHNGFDFTV IKELKTAVSQ YGATAPYTLA IVESIADNWL
TPADWNTLVR AVLSGGDHLI WKSEFFENCR DTAKRNQQAG NGWDFDMLTG SGNYANTDAQ MQYDPGLFAQ
IQAAATKAWR KLPVKGDPGA SLTGVKQGPD EPFADFVHRL ITTAGRIFGN AEAGVDYVKQ LAYENANPAC
QAAIRPYRKK TDLTGYIRLC SDIGPSYQQG LAMAAAFSGQ TVKDFLNNKN KDRGGCFKCG KRGHFAKDCR
DHSNKNPELK VPGLCPRCKR GKHWANECKS KTDSQGNPLP PHQGNRDEGP APGPEASLWG SQLCSSQQQQ
SISKLNRASP GSAGLDLCST THTVLTPEMG PQTLATGVYG PLPPNTFGLI LGRGSTTVKG LLIYPGVIDN
DYTGEFKIMA KAISSIITIP QGERIAQLIL LPLLRTAHKI QHPYRGNKNF GSSDIFWVQP ITNQKPSLVL
WLDGKAFTGL IDTGADVTII KQEDWPSHWP TTETLTNLRG IGQSNNPRQS SKYLTWKDKE NNSGLIKPFV
IPNLPVNLWG RDLLSQMKIM MCSPNDIVTA QMLAQGYSPG KGLGKREDGI LQPIPNSGQL NRKGFGNFLA
AAVDILAPQR YADPITWKSD EPVWVDQWPL TQEKLAAAQQ LVQEQLQAGH IIESNSPWNT PIFVIKKKSG
KWRLLQDLRA VNATMVLMGA LQPGLPSPVA IPQGYFKIVI DLKDCFFTIP LQPVDQKRFA FSLPSTNFKQ
PIKRYQWKVL PQGMANSPTL CQKYVAAAIE PIRKSWAQMY IIHYMDDILI AGKIGEQVLQ CFAQLKQALT
TTGLQIAPEK VQLQDPYTYL GFQLNGPKIT NHKAVIRRDK LQTLNDFQKL LGDINWLRPY LHLTTGDLKP
LFDILKGDSN PNSPRFLSEA ALTSLKKVET AIAEQFVTQI DYTQPLTLLI FNTTLTPTGL FWQNNPVMWI
HLPASPKKVL FPYYDAIADL IILGRDNSKK YFGLEPSTII QPYSKSQIHW LMQNTETWPI ACASYAGNID
NHYPPNKLIQ FCKLHAVVFP RIISKTPLDN ALLVFTDGSS TGIAAYTFEK TTVKFKTSHT SAQLVELQAL
IAVLSAFPQR ALNIYTDSAY LAHSIPLLET VSQIKHISDT AKLFLQCQQL IYNRSIPFYL GHIRAHSGLP
GPLSQGNHIT DLATKVVATT LTTNLTEAQA AHALHHLNAQ SLRLMFKITR EQARQIVKQC PTCVTYLPIP
HFGVNPKGLI PNMLWQMDVT HYSEFGKLKY VHVSIDTFSG FLVATLQTGE ATKHVIAHLL HCFSIIGQPI
HIKTDNGPGY TSSSFRAFCS KLHIKHTFGI PYNPQGQGIV ERAHLSLKNT LEKIKKGEWY PTQGSPRNIL
NHALFILNFL NLDAQNKSAA DRFWHTNSKR EYAMVKWKDP LDNSWHGPDP VLIWGRGSVC VYSQTHDAAR
WLPERLVRQV SNVTQSRE*
Publications
- Thayer RM, Power MD, Bryant ML, Gardner MB, Barr PJ, Luciw PA. (1987) Sequence relationships of type D retroviruses which cause simian acquired immunodeficiency syndrome. Virology. 157(2):317-329. [abstract]
- Hatfield DL, Levin JG, Rein A, Oroszlan S. (1992) Translational suppression in retroviral gene expression. Adv Virus Res. 41:193-239. [abstract]