Recode v. 2.0 / Database of translational recoding events.
Details for "r200221"
| Accession number | r200221 [export] |
| Locus name | gag-pro-pol |
| Recode1 name | pol_m_vir_srv1 |
| Description | viral or mobile polyprotein |
| Recode status | Validated |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Mason-Pfizer monkey virus [details] |
| Acronym | MPMV |
Sequence
| Variant | Simian retrovirus 1 |
| GenBank IDs | M11841.1 |
| Sequence | ss-RNA of 5472 nucleotides [sequence] |
| Organisation | Pseudoknot (1) [see structure]
|
Recoding events
| Event type | -1 Frameshifting (position: 1,982) |
| Description | production of fusion protein and set the ratio between two protein products. this is the part of the mRNA |
| Event type | -1 Frameshifting (position: 2,890) |
| Description | production of fusion protein and set the ratio between two protein products. this is the part of the mRNA |
ATTTGGCGCC CAACGTGGCG TTGGATACGA GGGAATTTCG TGAGGAAGAC GACGCGGTTT GCCGGCCCGG
ATTAAAAGAG AAACGAAAGT AAACTTTCTT CGGCCGCCGC GGGAGCCTGC CGCGTAGGAC CTGAAAGTAA
GTGGTGCGCT CGGATATGGG GCAGGAATTA AGCCAGCACG AACGTTATGT GGAACAATTA AAACAGGCTT
TAAAGACACG GGGAGTAAAG GTTAAATATG CTGATCTCTT AAAGTTTTTT GATTTTGTAA AGGATACTTG
TCCTTGGTTT CCGCAAGAGG GAACCATAGA TATCAAAAGG TGGCGTAGAG TAGGCGATTG TTTCCAAGAT
TATTATAATA CTTTTGGCCC TGAGAAAGTC CCAGTAACTG CCTTCTCATA CTGGAATTTA ATTAAAGAAT
TGATAGATAA GAAAGAAGTT AACCCACAAG TAATGGCTGC CGTGGCTCAA ACTGAAGAAA TCTTAAAAAC
TAGTTCTCAT ACAGAGCTTA CAACAAAGCC CTCCCAAAAT CCAGACTTGG ACCTTATTTC TCTTGATAGT
GACGATGAAG GAGCTAAAGG TTCCTCCCTA AAAGATAAAA ATTTATCATG TACTAAAAAG CCAAAAAGAT
TCCCAGTTCT ATTAACAGCA CAAACTAGTG CGGACCCTGA GGACCCCAAC CCCTCAGAGG TAGACTGGGA
CGGATTAGAG GATGAGGCAG CAAAATATCA TAATCCCGAT TGGCCTCCCT TCCTAACCCG TCCACCTCCT
TATAATAAAG CCACTCCTTC CGCACCCACT GTAATGGCGG TTGTTAATCC AAAAGAGGAA TTAAAAGAGA
AGATTGCTCA ATTAGAGGAA CAGATTAAAT TAGAAGAGTT ACATCAAGCA CTCATTTCCA AGTTACAAAA
ACTAAAAACA GGAAATGAAA CTGTCACTAG TCCAGAAACT GCAGGGGGCT TTTCTCGCAC ACCTCACTGG
CCGGGGCAAC ATATCCCTAA AGGAAAATGC TGCGCCAGTC GAGAAAAGGA AGAACAAACC CCAAAAGATA
TTTTCCCAGT AACTGAAACT GTCGATGGGC AGGGTCAAGC CTGGAGGCAC CATAATGGTT TTGATTTTAC
CGTCATAAAA GAATTAAAAA CGGCTGCCTC TCAATATGGG GCTACTGCCC CATACACATT AGCCATAGTA
GAATCTGTAG CGGACAATTG GCTTACCCCT ACAGATTGGA ATACACTTGT TAGGGCAGTC CTCTCAGGAG
GAGATCATTT ACTATGGAAA TCTGAGTTTT TTGAAAATTG TAGAGAAACG GCTAAAAGAA ATCAACAAGC
CGGTAATGGT TGGGATTTTG ATATGTTAAC AGGCTCAGGT AACTATTCTA GCACTGATGC ACAAATGCAA
TATGATCCGG GATTGTTTGC TCAAATTCAA GCGGCTGCTA CAAAAGCCTG GAGAAAACTT CCCGTTAAGG
GAGACCCAGG AGCTTCCCTT ACAGGAGTCA AACAAGGACC CGATGAGCCA TTTGCAGATT TTGTACACAG
ACTTATAACA ACTGCTGGGA GAATTTTTGG AAGTGCTGAG GCTGGTGTAG ACTATGTAAA ACAACTAGCA
TATGAAAACG CTAATCCAGC CTGTCAGGCA GCCATCCGCC CCTATAGAAA GAAAACAGAT TTAACTGGCT
ACATCCGCCT TTGTTCGGAC ATTGGGCCTT CTTATCAACA GGGCTTAGCC ATGGCCGCCG CCTTTAGCGG
ACAAACTGTC AAAGATTTTC TTAACAACAA AAATAAAGAA AAAGGAGGGT GTTGTTTTAA ATGCGGGAGG
AAAGGACATT TTGCAAAAAA TTGTCATGAA CATATACATA ACAATTCTGA AACAAAGGCT CCTGGACTCT
GTCCCAGGTG TAAAAGAGGG AAACATTGGG CCAATGAATG CAAATCCAAA ACTGATAGTC AAGGAAACCC
ACTACCACCC CATCAGGGAA ACGGACTGAG GGGCCAGCCC CAGGCCCCGA AACAAGCTTA TGGGGCGGTC
AGCTTTGTTC CAGCCAACAA AAACAACCCA TTTCAAAGCT TACCAGAGCC ACCCCAGGAA GTGCAGGATT
GGACCTCAGT TCCACCTCCC ACACAGTATT AACACCGGAA ATGGGGCCCC AAGCGTTAAG CACTGGAATA
TATGGGCCCC TACCTCCCAA CACTTTTGGA TTAATCTTAG GCAGAAGTAG CATTACTATA AAAGGTCTAC
AAGTTTATCC AGGAGTAATT GATAATGACT ATACTGGGGA AATTAAAATA ATGGCAAAGG CTGTCAACAA
TATTGTTACT GTTCCTCAAG GCAACAGGAT AGCTCAATTA ATCCTCCTAC CTCTAATTGA GACAGACAAT
AAAGTACAAC AACCCTATAG AGGACAAGGA AGTTTTGGAT CCTCAGACAT ATATTGGGTC CAACCTATTA
CCTGTCAGAA GCCCTCCTTA ACATTATGGT TAGATGATAA AATGTTCACA GGATTAATCG ATACGGGAGC
TGATGTCACT ATCATCAAGC TAGAGGACTG GCCTCCTAAT TGGCCTATAA CAGATACCTT AACCAATTTA
AGAGGTATAG GACAAAGCAA CAACCCTAAG CAAAGTTCTA AATATCTTAC TTGGAGAGAT AAAGAAAATA
ATTCTGGTCT CATTAAACCG TTTGTTATTC CTAATTTACC TGTCAACCTT TGGGGCAGAG ATCTCCTTTC
TCAAATGAAA ATTATGATGT GTAGTCCTAG TGACATAGTC ACTGCCCAAA TGTTAGCCCA AGGCTACAGC
CCCGGAAAAG GATTAGGAAA AAACGAAAAT GGCATTCTAC ATCCTATCCC AAATCAAGGA CAATTTGACA
AAAAGGGATT TGGAAATTTT TAACTGCGGC CATTGACATG CTTGCACCCC AACAGTGTGC TGAACCCATC
ACGTGGAAAT CAGACGAACC TGTCTGGGTT GATCAGTGGC CATTAACCAG TGAAAAACTT GCTGCTGCCC
AACAGTTAGT GCAAGAACAG TTAGAGGCAG GACATATTAC TGAAAGTAAT TCCCCTTGGA ACACTCCCAT
ATTTGTTATA AAAAAGAAAT CTGGTAAATG GAGGCTCTTA CAAGATTTAC GAGCCGTTAA TGCCACTATG
GTATTAATGG GAGCTTTACA ACCTGGATTG CCCTCTCCGG TGGCTATCCC ACAAGGGTAT CTTAAAATAA
TTATTGATCT CAAAGATTGT TTCTTTTCTA TTCCCCTTCA TCCTAGTGAT CAAAAAAGGT TTGCATTCAG
CCTACCTTCC ACAAATTTTA AGGAACCTAT GCAACGTTTT CAGTGGAAAG TTTTACCGCA ACGTATGGCC
AACAGCCCTA CCTTATGCCA AAAATATGTG GCCACAGCCA TACATAAAGT TAGACATGCC TGGAAACAAA
TGTATATTAT ACATTACATG GATGATATCC TCATAGCTGG TAAAGATGGA CAACAAGTTT TACAATGCTT
TGATCAGCTC AAACAAGAAT TGACTATAGC CGGGTTACAT ATAGCCCCAG AAAAAATTCA ACTACAAGAC
CCCTACACGT ATTTAGGATT TGAACTTAAT GGTCCAAAAA TCACTAATCA AAAGGCAGTT ATTCGTAAAG
ATAAGTTGCA AACTCTTAAT GACTTTCAAA AGCTTTTAGG AGACATCAAT TGGCTCCGAC CATACCTGAA
ACTCACTACT GCAGATTTAA AACCTTTATT CGACACCCTT AAAGGAGACT CTAATCCCAA TTCTCATAGA
TCTTTATCAA AAGAAGCTCT TGCCTTACTT GATAAAGTAG AAACAGCCAT TGCAGAACAA TTTGTTACTC
ACATAAATTA TTCATTACCA TTAATGTTTC TCATATTTAA CACAGCCCTG ACGCCCACTG GTTTATTTTG
GCAGAATAAT CCTATTATGT GGGTCCACCT GCCTGCATCC CCTAAAAAGG TATTACTCCC CTATTACGAC
GCTATAGCAG ATTTAATCAT ACTAGGAAGA GACCATAGTA AAAAATACTT TGGAATTGAA CCCTCCGTAA
TCATACAGCC ATACTCTAAG TCTCAAATTG ATTGGCTGAT GCAAAACACT GAAATGTGGC CAATTGCCTG
TGCCTCTTAT GTTGGCATCC TAGATAACCA TTACCCACCT AACAAGCTTA TCCAATTCTG CAAATTACAT
GCCTTTATTT TCCCTCAAAT CATTAGTAAA ACGCCCTTAA ACAATGCTTT ATTAGTTTTT ACTGATGGCT
CTTCCACTGG AATGGCCGCA TATACTCTTG CTGATACTAC CATCAAATTT CAAACTAATC TTAATTCGGC
TCAACTAGTA GAATTACAAG CCTTAATTGC AGTCCTATCA GCTTTCCCCA ACCAACCTCT TAACATTTAT
ACTGACAGTG CTTACTTAGC CCACTCAATA CCCCTGCTTG AAACTGTAGC ACAAATTAAA CACATATCAG
AAACAGCAAA GCTATTCCTA CAGTGCCAAC AGCTTATATA CAATAGATCC ATACCTTTTT ACATCGGACA
TGTCAGGGCC CATTCTGGCC TACCTGGACC TATAGCCCAC GGCAACCAAA AGGCTGACTT GGCAACTAAA
ACCGTGGCTA GCAACATAAA CACAAACCTC GAATCGGCTC AAAATGCTCA TACCTTACAT CATCTCAATG
CCCAAACTTT AAAACTAATG TTTAACATTC CGAGAGAACA AGCTAGACAA ATTGTCAGAC AATGCCCAAT
ATGTGCAACC TATCTACCAG TCCCTCATTT AGGAGTTAAT CCTAGAGGAT TGTTGCCCAA CATGATTTGG
CAAATGGACG TTACACATTA CTCCGAATTT GGTAATTTAA AATATATACA TGTTTCTATA GATACCTTCA
GTGGATTCCT ATTAGCCACT CTACAGACAG GAGAAACAAC AAAACATGTC ATAACCCATT TACTTCATTG
CTTCTCTATT ATTGGACTCC CTAAACAAAT AAAAACAGAT AACGGTCCTG GATACACCTC CAAAAATTTT
CAAGAATTCT GCTCCACACT TCAAATTAAA CATGTTACTG GAATCCCCTA TAATCCCCAA GGCCAAGGAA
TAGTTGAAAG AGCCCACTTA TCTCTTAAAA CCACCATTGA AAAAATAAAA AAGGGGGAAT GGTACCCTAC
GAAGGGTACC CCCAGGAACA TTCTCAATCA TGCACTCTTT ATTCTAAATT TTTTAAATTT GGATGATCAA
AACCACTCAG CAGCTGATCG TTTTTGGCAT AGCAACCCCA GAAAACAATT TGCCATGGTA AAATGGAAAG
ATCCACTAGA CAATACGTGG CCATGGCCTG ATCCAGTGAT AATTTGGGGC AGAGGTTCAG TCTGTGTTTA
CTCTCAAACC CATGATGCCG CTAGATGGCT ACCAGAACGA CTAGTAAAAC AAATACCTAA CAATAACCAA
TCCAGGGAGT GA
Products
| Product | gag |
| Description | gag capsid polyprotein |
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA
KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT
PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI
PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD
NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL
FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN
PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA
KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNG LRGQPQAPKQ AYGAVSFVPA
NKNNPFQSLP EPPQEVQDWT SVPPPTQY
| Product | gag-pro |
| Description | gag capsid polyprotein, protease |
| Modifications | 1982..1982:ribosomal_frameshift |
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA
KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT
PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI
PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD
NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL
FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN
PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA
KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNR TEGPAPGPET SLWGGQLCSS
QQKQPISKLT RATPGSAGLD LSSTSHTVLT PEMGPQALST GIYGPLPPNT FGLILGRSSI TIKGLQVYPG
VIDNDYTGEI KIMAKAVNNI VTVPQGNRIA QLILLPLIET DNKVQQPYRG QGSFGSSDIY WVQPITCQKP
SLTLWLDDKM FTGLIDTGAD VTIIKLEDWP PNWPITDTLT NLRGIGQSNN PKQSSKYLTW RDKENNSGLI
KPFVIPNLPV NLWGRDLLSQ MKIMMCSPSD IVTAQMLAQG YSPGKGLGKN ENGILHPIPN QGQFDKKGFG
NF
| Product | gag-pro-pol |
| Description | gag capsid polyprotein, protease, RNA polymerase |
| Modifications | 1982..1982:ribosomal_frameshift|2890..2890:ribosomal_frameshift |
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA
KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT
PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI
PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD
NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL
FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN
PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA
KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNR TEGPAPGPET SLWGGQLCSS
QQKQPISKLT RATPGSAGLD LSSTSHTVLT PEMGPQALST GIYGPLPPNT FGLILGRSSI TIKGLQVYPG
VIDNDYTGEI KIMAKAVNNI VTVPQGNRIA QLILLPLIET DNKVQQPYRG QGSFGSSDIY WVQPITCQKP
SLTLWLDDKM FTGLIDTGAD VTIIKLEDWP PNWPITDTLT NLRGIGQSNN PKQSSKYLTW RDKENNSGLI
KPFVIPNLPV NLWGRDLLSQ MKIMMCSPSD IVTAQMLAQG YSPGKGLGKN ENGILHPIPN QGQFDKKGFG
NFLTAAIDML APQQCAEPIT WKSDEPVWVD QWPLTSEKLA AAQQLVQEQL EAGHITESNS PWNTPIFVIK
KKSGKWRLLQ DLRAVNATMV LMGALQPGLP SPVAIPQGYL KIIIDLKDCF FSIPLHPSDQ KRFAFSLPST
NFKEPMQRFQ WKVLPQRMAN SPTLCQKYVA TAIHKVRHAW KQMYIIHYMD DILIAGKDGQ QVLQCFDQLK
QELTIAGLHI APEKIQLQDP YTYLGFELNG PKITNQKAVI RKDKLQTLND FQKLLGDINW LRPYLKLTTA
DLKPLFDTLK GDSNPNSHRS LSKEALALLD KVETAIAEQF VTHINYSLPL MFLIFNTALT PTGLFWQNNP
IMWVHLPASP KKVLLPYYDA IADLIILGRD HSKKYFGIEP SVIIQPYSKS QIDWLMQNTE MWPIACASYV
GILDNHYPPN KLIQFCKLHA FIFPQIISKT PLNNALLVFT DGSSTGMAAY TLADTTIKFQ TNLNSAQLVE
LQALIAVLSA FPNQPLNIYT DSAYLAHSIP LLETVAQIKH ISETAKLFLQ CQQLIYNRSI PFYIGHVRAH
SGLPGPIAHG NQKADLATKT VASNINTNLE SAQNAHTLHH LNAQTLKLMF NIPREQARQI VRQCPICATY
LPVPHLGVNP RGLLPNMIWQ MDVTHYSEFG NLKYIHVSID TFSGFLLATL QTGETTKHVI THLLHCFSII
GLPKQIKTDN GPGYTSKNFQ EFCSTLQIKH VTGIPYNPQG QGIVERAHLS LKTTIEKIKK GEWYPTKGTP
RNILNHALFI LNFLNLDDQN HSAADRFWHS NPRKQFAMVK WKDPLDNTWP WPDPVIIWGR GSVCVYSQTH
DAARWLPERL VKQIPNNNQS RE*
Publications
- Giedroc DP, Theimer CA, Nixon PL. (2000) Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. J Mol Biol. 298(2):167-185. [abstract]
- ten Dam EB, Verlaan PW, Pleij CW. (1995) Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions. RNA. 1(2):146-154. [abstract]
- Du Z, Holland JA, Hansen MR, Giedroc DP, Hoffman DW. (1997) Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site. J Mol Biol. 270(3):464-470. [abstract]
- ten Dam E, Brierley I, Inglis S, Pleij C. (1994) Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1. Nucleic Acids Res. 22(12):2304-2310. [abstract]
- Hatfield DL, Levin JG, Rein A, Oroszlan S. (1992) Translational suppression in retroviral gene expression. Adv Virus Res. 41:193-239. [abstract]