Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200221"

Accession numberr200221 [export]
Locus namegag-pro-pol
Recode1 namepol_m_vir_srv1
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismMason-Pfizer monkey virus [details]
AcronymMPMV

Sequence

VariantSimian retrovirus 1
GenBank IDsM11841.1
Sequencess-RNA of 5472 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding events

Event type-1 Frameshifting (position: 1,982)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
Event type-1 Frameshifting (position: 2,890)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
ATTTGGCGCC CAACGTGGCG TTGGATACGA GGGAATTTCG TGAGGAAGAC GACGCGGTTT GCCGGCCCGG ATTAAAAGAG AAACGAAAGT AAACTTTCTT CGGCCGCCGC GGGAGCCTGC CGCGTAGGAC CTGAAAGTAA GTGGTGCGCT CGGATATGGG GCAGGAATTA AGCCAGCACG AACGTTATGT GGAACAATTA AAACAGGCTT TAAAGACACG GGGAGTAAAG GTTAAATATG CTGATCTCTT AAAGTTTTTT GATTTTGTAA AGGATACTTG TCCTTGGTTT CCGCAAGAGG GAACCATAGA TATCAAAAGG TGGCGTAGAG TAGGCGATTG TTTCCAAGAT TATTATAATA CTTTTGGCCC TGAGAAAGTC CCAGTAACTG CCTTCTCATA CTGGAATTTA ATTAAAGAAT TGATAGATAA GAAAGAAGTT AACCCACAAG TAATGGCTGC CGTGGCTCAA ACTGAAGAAA TCTTAAAAAC TAGTTCTCAT ACAGAGCTTA CAACAAAGCC CTCCCAAAAT CCAGACTTGG ACCTTATTTC TCTTGATAGT GACGATGAAG GAGCTAAAGG TTCCTCCCTA AAAGATAAAA ATTTATCATG TACTAAAAAG CCAAAAAGAT TCCCAGTTCT ATTAACAGCA CAAACTAGTG CGGACCCTGA GGACCCCAAC CCCTCAGAGG TAGACTGGGA CGGATTAGAG GATGAGGCAG CAAAATATCA TAATCCCGAT TGGCCTCCCT TCCTAACCCG TCCACCTCCT TATAATAAAG CCACTCCTTC CGCACCCACT GTAATGGCGG TTGTTAATCC AAAAGAGGAA TTAAAAGAGA AGATTGCTCA ATTAGAGGAA CAGATTAAAT TAGAAGAGTT ACATCAAGCA CTCATTTCCA AGTTACAAAA ACTAAAAACA GGAAATGAAA CTGTCACTAG TCCAGAAACT GCAGGGGGCT TTTCTCGCAC ACCTCACTGG CCGGGGCAAC ATATCCCTAA AGGAAAATGC TGCGCCAGTC GAGAAAAGGA AGAACAAACC CCAAAAGATA TTTTCCCAGT AACTGAAACT GTCGATGGGC AGGGTCAAGC CTGGAGGCAC CATAATGGTT TTGATTTTAC CGTCATAAAA GAATTAAAAA CGGCTGCCTC TCAATATGGG GCTACTGCCC CATACACATT AGCCATAGTA GAATCTGTAG CGGACAATTG GCTTACCCCT ACAGATTGGA ATACACTTGT TAGGGCAGTC CTCTCAGGAG GAGATCATTT ACTATGGAAA TCTGAGTTTT TTGAAAATTG TAGAGAAACG GCTAAAAGAA ATCAACAAGC CGGTAATGGT TGGGATTTTG ATATGTTAAC AGGCTCAGGT AACTATTCTA GCACTGATGC ACAAATGCAA TATGATCCGG GATTGTTTGC TCAAATTCAA GCGGCTGCTA CAAAAGCCTG GAGAAAACTT CCCGTTAAGG GAGACCCAGG AGCTTCCCTT ACAGGAGTCA AACAAGGACC CGATGAGCCA TTTGCAGATT TTGTACACAG ACTTATAACA ACTGCTGGGA GAATTTTTGG AAGTGCTGAG GCTGGTGTAG ACTATGTAAA ACAACTAGCA TATGAAAACG CTAATCCAGC CTGTCAGGCA GCCATCCGCC CCTATAGAAA GAAAACAGAT TTAACTGGCT ACATCCGCCT TTGTTCGGAC ATTGGGCCTT CTTATCAACA GGGCTTAGCC ATGGCCGCCG CCTTTAGCGG ACAAACTGTC AAAGATTTTC TTAACAACAA AAATAAAGAA AAAGGAGGGT GTTGTTTTAA ATGCGGGAGG AAAGGACATT TTGCAAAAAA TTGTCATGAA CATATACATA ACAATTCTGA AACAAAGGCT CCTGGACTCT GTCCCAGGTG TAAAAGAGGG AAACATTGGG CCAATGAATG CAAATCCAAA ACTGATAGTC AAGGAAACCC ACTACCACCC CATCAGGGAA ACGGACTGAG GGGCCAGCCC CAGGCCCCGA AACAAGCTTA TGGGGCGGTC AGCTTTGTTC CAGCCAACAA AAACAACCCA TTTCAAAGCT TACCAGAGCC ACCCCAGGAA GTGCAGGATT GGACCTCAGT TCCACCTCCC ACACAGTATT AACACCGGAA ATGGGGCCCC AAGCGTTAAG CACTGGAATA TATGGGCCCC TACCTCCCAA CACTTTTGGA TTAATCTTAG GCAGAAGTAG CATTACTATA AAAGGTCTAC AAGTTTATCC AGGAGTAATT GATAATGACT ATACTGGGGA AATTAAAATA ATGGCAAAGG CTGTCAACAA TATTGTTACT GTTCCTCAAG GCAACAGGAT AGCTCAATTA ATCCTCCTAC CTCTAATTGA GACAGACAAT AAAGTACAAC AACCCTATAG AGGACAAGGA AGTTTTGGAT CCTCAGACAT ATATTGGGTC CAACCTATTA CCTGTCAGAA GCCCTCCTTA ACATTATGGT TAGATGATAA AATGTTCACA GGATTAATCG ATACGGGAGC TGATGTCACT ATCATCAAGC TAGAGGACTG GCCTCCTAAT TGGCCTATAA CAGATACCTT AACCAATTTA AGAGGTATAG GACAAAGCAA CAACCCTAAG CAAAGTTCTA AATATCTTAC TTGGAGAGAT AAAGAAAATA ATTCTGGTCT CATTAAACCG TTTGTTATTC CTAATTTACC TGTCAACCTT TGGGGCAGAG ATCTCCTTTC TCAAATGAAA ATTATGATGT GTAGTCCTAG TGACATAGTC ACTGCCCAAA TGTTAGCCCA AGGCTACAGC CCCGGAAAAG GATTAGGAAA AAACGAAAAT GGCATTCTAC ATCCTATCCC AAATCAAGGA CAATTTGACA AAAAGGGATT TGGAAATTTT TAACTGCGGC CATTGACATG CTTGCACCCC AACAGTGTGC TGAACCCATC ACGTGGAAAT CAGACGAACC TGTCTGGGTT GATCAGTGGC CATTAACCAG TGAAAAACTT GCTGCTGCCC AACAGTTAGT GCAAGAACAG TTAGAGGCAG GACATATTAC TGAAAGTAAT TCCCCTTGGA ACACTCCCAT ATTTGTTATA AAAAAGAAAT CTGGTAAATG GAGGCTCTTA CAAGATTTAC GAGCCGTTAA TGCCACTATG GTATTAATGG GAGCTTTACA ACCTGGATTG CCCTCTCCGG TGGCTATCCC ACAAGGGTAT CTTAAAATAA TTATTGATCT CAAAGATTGT TTCTTTTCTA TTCCCCTTCA TCCTAGTGAT CAAAAAAGGT TTGCATTCAG CCTACCTTCC ACAAATTTTA AGGAACCTAT GCAACGTTTT CAGTGGAAAG TTTTACCGCA ACGTATGGCC AACAGCCCTA CCTTATGCCA AAAATATGTG GCCACAGCCA TACATAAAGT TAGACATGCC TGGAAACAAA TGTATATTAT ACATTACATG GATGATATCC TCATAGCTGG TAAAGATGGA CAACAAGTTT TACAATGCTT TGATCAGCTC AAACAAGAAT TGACTATAGC CGGGTTACAT ATAGCCCCAG AAAAAATTCA ACTACAAGAC CCCTACACGT ATTTAGGATT TGAACTTAAT GGTCCAAAAA TCACTAATCA AAAGGCAGTT ATTCGTAAAG ATAAGTTGCA AACTCTTAAT GACTTTCAAA AGCTTTTAGG AGACATCAAT TGGCTCCGAC CATACCTGAA ACTCACTACT GCAGATTTAA AACCTTTATT CGACACCCTT AAAGGAGACT CTAATCCCAA TTCTCATAGA TCTTTATCAA AAGAAGCTCT TGCCTTACTT GATAAAGTAG AAACAGCCAT TGCAGAACAA TTTGTTACTC ACATAAATTA TTCATTACCA TTAATGTTTC TCATATTTAA CACAGCCCTG ACGCCCACTG GTTTATTTTG GCAGAATAAT CCTATTATGT GGGTCCACCT GCCTGCATCC CCTAAAAAGG TATTACTCCC CTATTACGAC GCTATAGCAG ATTTAATCAT ACTAGGAAGA GACCATAGTA AAAAATACTT TGGAATTGAA CCCTCCGTAA TCATACAGCC ATACTCTAAG TCTCAAATTG ATTGGCTGAT GCAAAACACT GAAATGTGGC CAATTGCCTG TGCCTCTTAT GTTGGCATCC TAGATAACCA TTACCCACCT AACAAGCTTA TCCAATTCTG CAAATTACAT GCCTTTATTT TCCCTCAAAT CATTAGTAAA ACGCCCTTAA ACAATGCTTT ATTAGTTTTT ACTGATGGCT CTTCCACTGG AATGGCCGCA TATACTCTTG CTGATACTAC CATCAAATTT CAAACTAATC TTAATTCGGC TCAACTAGTA GAATTACAAG CCTTAATTGC AGTCCTATCA GCTTTCCCCA ACCAACCTCT TAACATTTAT ACTGACAGTG CTTACTTAGC CCACTCAATA CCCCTGCTTG AAACTGTAGC ACAAATTAAA CACATATCAG AAACAGCAAA GCTATTCCTA CAGTGCCAAC AGCTTATATA CAATAGATCC ATACCTTTTT ACATCGGACA TGTCAGGGCC CATTCTGGCC TACCTGGACC TATAGCCCAC GGCAACCAAA AGGCTGACTT GGCAACTAAA ACCGTGGCTA GCAACATAAA CACAAACCTC GAATCGGCTC AAAATGCTCA TACCTTACAT CATCTCAATG CCCAAACTTT AAAACTAATG TTTAACATTC CGAGAGAACA AGCTAGACAA ATTGTCAGAC AATGCCCAAT ATGTGCAACC TATCTACCAG TCCCTCATTT AGGAGTTAAT CCTAGAGGAT TGTTGCCCAA CATGATTTGG CAAATGGACG TTACACATTA CTCCGAATTT GGTAATTTAA AATATATACA TGTTTCTATA GATACCTTCA GTGGATTCCT ATTAGCCACT CTACAGACAG GAGAAACAAC AAAACATGTC ATAACCCATT TACTTCATTG CTTCTCTATT ATTGGACTCC CTAAACAAAT AAAAACAGAT AACGGTCCTG GATACACCTC CAAAAATTTT CAAGAATTCT GCTCCACACT TCAAATTAAA CATGTTACTG GAATCCCCTA TAATCCCCAA GGCCAAGGAA TAGTTGAAAG AGCCCACTTA TCTCTTAAAA CCACCATTGA AAAAATAAAA AAGGGGGAAT GGTACCCTAC GAAGGGTACC CCCAGGAACA TTCTCAATCA TGCACTCTTT ATTCTAAATT TTTTAAATTT GGATGATCAA AACCACTCAG CAGCTGATCG TTTTTGGCAT AGCAACCCCA GAAAACAATT TGCCATGGTA AAATGGAAAG ATCCACTAGA CAATACGTGG CCATGGCCTG ATCCAGTGAT AATTTGGGGC AGAGGTTCAG TCTGTGTTTA CTCTCAAACC CATGATGCCG CTAGATGGCT ACCAGAACGA CTAGTAAAAC AAATACCTAA CAATAACCAA TCCAGGGAGT GA

Products

Productgag
Descriptiongag capsid polyprotein
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNG LRGQPQAPKQ AYGAVSFVPA NKNNPFQSLP EPPQEVQDWT SVPPPTQY
Productgag-pro
Descriptiongag capsid polyprotein, protease
Modifications1982..1982:ribosomal_frameshift
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNR TEGPAPGPET SLWGGQLCSS QQKQPISKLT RATPGSAGLD LSSTSHTVLT PEMGPQALST GIYGPLPPNT FGLILGRSSI TIKGLQVYPG VIDNDYTGEI KIMAKAVNNI VTVPQGNRIA QLILLPLIET DNKVQQPYRG QGSFGSSDIY WVQPITCQKP SLTLWLDDKM FTGLIDTGAD VTIIKLEDWP PNWPITDTLT NLRGIGQSNN PKQSSKYLTW RDKENNSGLI KPFVIPNLPV NLWGRDLLSQ MKIMMCSPSD IVTAQMLAQG YSPGKGLGKN ENGILHPIPN QGQFDKKGFG NF
Productgag-pro-pol
Descriptiongag capsid polyprotein, protease, RNA polymerase
Modifications1982..1982:ribosomal_frameshift|2890..2890:ribosomal_frameshift
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNR TEGPAPGPET SLWGGQLCSS QQKQPISKLT RATPGSAGLD LSSTSHTVLT PEMGPQALST GIYGPLPPNT FGLILGRSSI TIKGLQVYPG VIDNDYTGEI KIMAKAVNNI VTVPQGNRIA QLILLPLIET DNKVQQPYRG QGSFGSSDIY WVQPITCQKP SLTLWLDDKM FTGLIDTGAD VTIIKLEDWP PNWPITDTLT NLRGIGQSNN PKQSSKYLTW RDKENNSGLI KPFVIPNLPV NLWGRDLLSQ MKIMMCSPSD IVTAQMLAQG YSPGKGLGKN ENGILHPIPN QGQFDKKGFG NFLTAAIDML APQQCAEPIT WKSDEPVWVD QWPLTSEKLA AAQQLVQEQL EAGHITESNS PWNTPIFVIK KKSGKWRLLQ DLRAVNATMV LMGALQPGLP SPVAIPQGYL KIIIDLKDCF FSIPLHPSDQ KRFAFSLPST NFKEPMQRFQ WKVLPQRMAN SPTLCQKYVA TAIHKVRHAW KQMYIIHYMD DILIAGKDGQ QVLQCFDQLK QELTIAGLHI APEKIQLQDP YTYLGFELNG PKITNQKAVI RKDKLQTLND FQKLLGDINW LRPYLKLTTA DLKPLFDTLK GDSNPNSHRS LSKEALALLD KVETAIAEQF VTHINYSLPL MFLIFNTALT PTGLFWQNNP IMWVHLPASP KKVLLPYYDA IADLIILGRD HSKKYFGIEP SVIIQPYSKS QIDWLMQNTE MWPIACASYV GILDNHYPPN KLIQFCKLHA FIFPQIISKT PLNNALLVFT DGSSTGMAAY TLADTTIKFQ TNLNSAQLVE LQALIAVLSA FPNQPLNIYT DSAYLAHSIP LLETVAQIKH ISETAKLFLQ CQQLIYNRSI PFYIGHVRAH SGLPGPIAHG NQKADLATKT VASNINTNLE SAQNAHTLHH LNAQTLKLMF NIPREQARQI VRQCPICATY LPVPHLGVNP RGLLPNMIWQ MDVTHYSEFG NLKYIHVSID TFSGFLLATL QTGETTKHVI THLLHCFSII GLPKQIKTDN GPGYTSKNFQ EFCSTLQIKH VTGIPYNPQG QGIVERAHLS LKTTIEKIKK GEWYPTKGTP RNILNHALFI LNFLNLDDQN HSAADRFWHS NPRKQFAMVK WKDPLDNTWP WPDPVIIWGR GSVCVYSQTH DAARWLPERL VKQIPNNNQS RE*

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