Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200225"

Accession numberr200225 [export]
Locus namegag-pro pol
Recode1 namepol_m_vir_visna
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismVisna/Maedi virus [details]

Sequence

GenBank IDsAF033815.1,M12349.1
Sequencess-RNA of 5557 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding events

Event type-1 Frameshifting (position: 2,067)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
Event type-1 Frameshifting (position: 2,975)
Descriptionproduction of fusion protein and set the ratio between two protein products. this is the part of the mRNA
GAACACTGTC TTGTCTCCAT TTCTTGTGTC TCTTGTTCCC TTCAATTCCC ACTCCCTCCT CCAGGTTCCT ACTGTTGATC CCGCGGGTCG GGACAGTTGG CGCCCAACGT GGGGCTGGAT ACGAGGGAAT TTCGTGAGGA AGACGACGCG TTCGCCGGCC GGCGATTAAA AGTGAAAGTA AACTCTCTTG GCCGCCGCGG GAACCTGCCG CGTTGGACCT GAAAGTAAGT GTTGCGCTCG GATATGGGGC AAGAATTAAG CCAGCATGAA CGTTATGTAG AACAATTGAA GCAGGCTTTA AAGACACGGG GAGTAAAGGT TAAATATGCT GATCTTTTGA AATTTTTTGA TTTTGTGAAG GATACTTGTC CTTGGTTTCC GCAAGAGGGA ACCATAGATA TTAAACGGTG GCGTAGAGTA GGCGACTGTT TCCAAGACTA TTACAATACT TTTGGCCCGG AGAAAGTCCC AGTAACTGCA TTCTCTTACT GGAACTTAAT TAAAGAATTG ATAGATAAGA AAGAAGTTAA CCCACAAGTA ATGGCTGCCG TAGCCCAAAC TGAAGAAATT TTAAAAAGTA ATTCTCAAAC AGACCTCACA AAGACCTCTC AAAACCCAGA CTTGGACCTT ATTTCCCTTG ATAGCGACGA TGAAGGAGCT AAAAGTTCCT CTCTACAAGA TAAAGGTTTA TCAAGTACTA AAAAACCAAA AAGATTCCCA GTTCTGTTAA CAGCACAAAC TAGTAAAGAC CCTGAAGACC CCAACCCCTC AGAGGTAGAC TGGGACGGCT TGGAAGATGA GGCAGCGAAA TATCATAATC CCGATTGGCC TCCCTTCCTA ACCCGTCCAC CTCCTTACAA TAAAGCTACT CCTTCCGCAC CCACTGTAAT GGCGGTTGTT AATCCAAAAG AGGAGCTCAA AGAAAAAATT GCTCAATTAG AGGAACAGAT TAAATTAGAA GAGTTACACC AGGCACTAAT TTCCAAATTA CAAAAACTAA AAACAGGGAA TGAAACTGTA ACTCACCCAG ACACAGCAGG AGGCCTTTCT CGCACGCCTC ACTGGCCAGG GCAACATATC CCTAAAGGAA AATGTTGCGC CAGTCGAGAA AAGGAAGAAC AAATCCCAAA AGATATTTTC CCAGTGACTG AAACCGTTGA TGGGCAAGGT CAAGCCTGGA GACACCATAA TGGTTTTGAT TTTGCCGTCA TAAAAGAATT AAAAACAGCT GCTTCCCAAT ATGGGGCTAC TGCCCCATAC ACATTAGCCA TAGTGGAATC TGTAGCGGAC AATTGGCTTA CCCCTACAGA TTGGAATACG CTTGTTAGGG CAGTCCTCTC AGGAGGAGAT CACTTACTGT GGAAATCTGA GTTTTTTGAA AATTGCAGAG ATACGGCTAA AAGAAACCAA CAAGCCGGTA ATGGCTGGGA TTTTGACATG TTAACAGGTT CGGGTAATTA TTCCAGCACC GATGCACAAA TGCAGTATGA TCCAGGATTG TTTGCTCAAA TTCAAGCGGC TGCTACAAAA GCCTGGAGAA AACTTCCCGT TAAGGGAGAC CCAGGAGCCT CCCTTACAGG AGTCAAACAA GGACCCGATG AGCCATTTGC AGATTTCGTA CACAGACTTA TAACAACTGC TGGGAGAATC TTTGGAAGTG CTGAGGCCGG TGTAGACTAT GTAAAACAAC TAGCATATGA AAATGCTAAT CCAGCTTGTC AGGCAGCCAT TCGCCCCTAT AGAAAGAAGA CAGATTTAAC TGGCTATATC CGTCTTTGCT CGGATATTGG GCCCTCTTAT CAGCAAGGCC TGGCCATGGC CGCCGCCTTT AGCGGGCAGA CTGTAAAAGA TTTTCTTAAC AACAAAAATA AAGAGAAAGG AGGGTGTTGC TTTAAATGCG GTAAAAAAGG ACACTTTGCA AAAAATTGTC ATGAACATGC ACATAACAAT GCTGAACCAA AAGTTCCCGG ACTCTGCCCT AGATGTAAAA GAGGGAAACA TTGGGCCAAT GAATGCAAAT CCAAAACTGA TAATCAAGGA AACCCAATAC CACCCCATCA GGGAAACGGG TGGAGGGGCC AGCCCCAGGC CCCGAAACAA GCTTATGGGG CAGTCAGCTT TGTTCCAGCC AACAAAAACA ACCCATTTCA AAGCTTACCA GAGCCACCCC AGGAAGTGCA GGATTGGACC TCTGTTCCAC CTCCCACACA GTATTAACGC CTGAAATGGG GCCCCAAGCG TTAAGCACTG GAATATATGG ACCACTGCCT CCCAACACTT TTGGATTAAT CCTAGGCCGA AGTAGCATTA CTATGAAGGG TCTACAAGTT TATCCAGGAG TAATTGATAA TGACTATACC GGAGAAATTA AAATTATGGC AAAAGCTGTT AACAATATTG TTACTGTCTC TCAAGGCAAC AGAATAGCTC AATTAATCCT CCTGCCTCTG ATCGAGACAG ACAATAAGGT ACAACAACCT TATAGAGGAC AAGGAAGTTT TGGATCCTCA GACATATATT GGGTCCAACC TATTACTTGT CAAAAACCTT CCTTAACATT ATGGTTAGAT GACAAAATGT TCACAGGCTT AATAGATACG GGGGCTGATG TCACAATTAT CAAGCTGGAG GACTGGCCTC CTAATTGGCC TATAACAGAT ACCTTAACCA ATTTAAGAGG AATAGGACAA AGTAACAACC CTAAACAAAG TTCTAAATAT CTTACTTGGA GAGATAAAGA AAACAATTCT GGTCTCATCA AACCGTTTGT TATTCCTAAC TTACCTGTCA ATCTTTGGGG CCGAGATTTA CTTTCTCAAA TGAAAATTAT GATGTGTAGC CCCAATGACA TAGTAACTGC TCAAATGTTA GCCCAGGGCT ACAGCCCAGG AAAAGGGTTA GGAAAAAAGG AAAATGGCAT TCTACATCCT ATCCCAAATC AAGGACAATC TAACAAAAAA GGTTTTGGAA ATTTTTAACT GCGGCCATTG ACATACTTGC ACCCCAACAG TGCGCTGAAC CCATCACGTG GAAATCAGAC GAACCTGTCT GGGTTGATCA GTGGCCATTA ACCAATGACA AACTTGCTGC TGCCCAACAG TTAGTGCAAG AACAGTTAGA GGCAGGACAT ATTACTGAAA GTAGTTCTCC CTGGAACACT CCCATATTTG TTATAAAAAA GAAATCTGGT AAATGGAGGC TCTTACAAGA TTTACGAGCC GTTAATGCCA CTATGGTATT AATGGGAGCT TTACAACCTG GATTACCCTC CCCGGTGGCT ATCCCACAAG GGTATCTTAA AATAATTATT GATCTCAAGG ATTGTTTCTT TTCTATTCCC CTTCATCCTA GTGACCAAAA AAGATTTGCC TTCAGCCTAC CATCCACAAA TTTTAAAGAA CCTATGCAAC GTTTTCAGTG GAAGGTTTTA CCACAAGGTA TGGCCAACAG TCCTACCTTA TGTCAAAAAT ATGTGGCCAC AGCCATACAT AAGGTTAGAC ATGCCTGGAA ACAAATGTAT ATTATACATT ACATGGATGA CATCCTAATA GCTGGTAAAG ATGGACAACA AGTTTTGCAA TGCTTTGATC AACTCAAACA AGAGTTGACT GCAGCTGGGT TACATATAGC CCCAGAAAAA GTTCAATTAC AAGATCCCTA CACATATTTA GGATTTGAAC TTAATGGTCC TAAAATCACT AATCAAAAAG CAGTCATTCG TAAAGATAAA TTACAGACTC TTAATGATTT CCAAAAACTT TTAGGAGACA TCAATTGGCT CAGACCATAT CTAAAACTCA CTACTGGAGA CTTAAAACCC TTATTCGACA CCCTTAAAGG AGACTCTGAC CCCAATTCCC ATAGATCCTT ATCAAAAGAA GCTCTTGCCT CACTTGAAAA GGTAGAGACA GCCATTGCAG AACAATTCGT TACTCACATA AATTATTCAC TACCATTAAT TTTCCTCATA TTCAACACAG CCCTGACACC TACTGGTTTG TTTTGGCAAG ACAATCCTAT TATGTGGATC CACCTGCCTG CATCCCCTAA AAAGGTGTTA CTTCCCTACT ACGACGCTAT AGCAGATTTA ATCATACTAG GGAGAGACCA TAGTAAAAAA TATTTTGGAA TTGAACCCTC TACAATCATA CAACCATATT CTAAGTCTCA GATTGATTGG TTAATGCAAA ACACTGAAAT GTGGCCAATT GCCTGTGCCT CCTTTGTTGG CATCCTAGAT AACCATTATC CACCAAATAA ACTTATCCAG TTCTGTAAAC TACATACCTT TGTTTTCCCT CAAATCATTA GTAAAACACC CTTAAACAAT GCCTTATTAG TTTTTACTGA TGGCTCTTCC ACTGGGATGG CCGCATATAC TCTTACTGAT ACCACCATCA AATTCCAAAC TAATCTTAAT TCGGCTCAAC TAGTAGAACT ACAAGCTTTA ATTGCAGTCT TATCAGCCTT CCCTAATCAA CCTCTTAATA TTTACACTGA CAGTGCTTAC TTAGCCCACT CAATACCCCT ACTTGAAACT GTCGCACAAA TTAAACACAT ATCAGAAACA GCTAAACTGT TCCTACAGTG CCAGCAACTC ATATACAATA GATCCATACC TTTTTATATT GGACATGTCA GGGCCCATTC TGGACTACCT GGACCCATAG CTCAAGGCAA CCAACGAGCT GACTTGGCAA CTAAAATCGT GGCTAGTAAC ATAAACACAA ACCTCGAATC AGCTCAAAAT GCTCATACCT TACATCACCT CAATGCCCAG ACTTTAAGAC TTATGTTTAA CATTCCTAGA GAACAAGCTA GACAAATTGT TAAGCAATGT CCTATATGTG TAACTTATCT ACCAGTCCCT CATTTAGGAG TTAATCCTAG GGGATTATTT CCCAACATGA TTTGGCAAAT GGATGTTACA CACTACTCAG AATTTGGCAA TTTAAAATAT ATTCATGTAT CTATAGATAC ATTCAGTGGA TTCCTACTGG CCACTCTACA AACAGGAGAA ACTACAAAAC ATGTCATAAC CCATTTACTC CATTGCTTCT CTATTATTGG ACTCCCTAAA CAAATTAAAA CGGATAACGG TCCTGGATAC ACCTCTAAAA ATTTTCAAGA ATTTTGCTCC ACACTTCAAA TTAAACATAT TACTGGAATC CCCTATAACC CCCAAGGCCA AGGAATAGTT GAAAGAGCCC ACTTATCTCT TAAAACCACC ATTGAAAAGA TAAAAAAGGG GGAATGGTAC CCTAGGAAGG GTACCCCCAG GAACATCCTC AATCATGCAC TCTTTATTCT AAATTTTTTA AATTTAGATG ATCAAAATAA ATCAGCAGCT GATCGTTTTT GGCATAATAA CCCCAAAAAA CAATTTGCCA TGGTAAAATG GAAAGATCCA TTAGATAATA CATGGCATGG CCCCGATCCA GTGTTAATTT GGGGCAGAGG TTCAGTCTGT GTTTACTCTC AAACCTATGA TGCCGCTAGA TGGCTACCAG AACGGTTAGT AAGACAGGTG TCTAACAATA ACCAATCCAG GGAGTGA

Products

Productgag
Descriptiongag capsid polyprotein
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KSNSQTDLTK TSQNPDLDLI SLDSDDEGAK SSSLQDKGLS STKKPKRFPV LLTAQTSKDP EDPNPSEVDW DGLEDEAAKY HNPDWPPFLT RPPPYNKATP SAPTVMAVVN PKEELKEKIA QLEEQIKLEE LHQALISKLQ KLKTGNETVT HPDTAGGLSR TPHWPGQHIP KGKCCASREK EEQIPKDIFP VTETVDGQGQ AWRHHNGFDF AVIKELKTAA SQYGATAPYT LAIVESVADN WLTPTDWNTL VRAVLSGGDH LLWKSEFFEN CRDTAKRNQQ AGNGWDFDML TGSGNYSSTD AQMQYDPGLF AQIQAAATKA WRKLPVKGDP GASLTGVKQG PDEPFADFVH RLITTAGRIF GSAEAGVDYV KQLAYENANP ACQAAIRPYR KKTDLTGYIR LCSDIGPSYQ QGLAMAAAFS GQTVKDFLNN KNKEKGGCCF KCGKKGHFAK NCHEHAHNNA EPKVPGLCPR CKRGKHWANE CKSKTDNQGN PIPPHQGNGW RGQPQAPKQA YGAVSFVPAN KNNPFQSLPE PPQEVQDWTS VPPPTQY
Productgag-pro
Descriptiongag capsid polyprotein, protease
Modifications2067..2067:ribosomal_frameshift
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KSNSQTDLTK TSQNPDLDLI SLDSDDEGAK SSSLQDKGLS STKKPKRFPV LLTAQTSKDP EDPNPSEVDW DGLEDEAAKY HNPDWPPFLT RPPPYNKATP SAPTVMAVVN PKEELKEKIA QLEEQIKLEE LHQALISKLQ KLKTGNETVT HPDTAGGLSR TPHWPGQHIP KGKCCASREK EEQIPKDIFP VTETVDGQGQ AWRHHNGFDF AVIKELKTAA SQYGATAPYT LAIVESVADN WLTPTDWNTL VRAVLSGGDH LLWKSEFFEN CRDTAKRNQQ AGNGWDFDML TGSGNYSSTD AQMQYDPGLF AQIQAAATKA WRKLPVKGDP GASLTGVKQG PDEPFADFVH RLITTAGRIF GSAEAGVDYV KQLAYENANP ACQAAIRPYR KKTDLTGYIR LCSDIGPSYQ QGLAMAAAFS GQTVKDFLNN KNKEKGGCCF KCGKKGHFAK NCHEHAHNNA EPKVPGLCPR CKRGKHWANE CKSKTDNQGN PIPPHQGNRV EGPAPGPETS LWGSQLCSSQ QKQPISKLTR ATPGSAGLDL CSTSHTVLTP EMGPQALSTG IYGPLPPNTF GLILGRSSIT MKGLQVYPGV IDNDYTGEIK IMAKAVNNIV TVSQGNRIAQ LILLPLIETD NKVQQPYRGQ GSFGSSDIYW VQPITCQKPS LTLWLDDKMF TGLIDTGADV TIIKLEDWPP NWPITDTLTN LRGIGQSNNP KQSSKYLTWR DKENNSGLIK PFVIPNLPVN LWGRDLLSQM KIMMCSPNDI VTAQMLAQGY SPGKGLGKKE NGILHPIPNQ GQSNKKGFGN F
Productgag-pro-pol
Descriptiongag capsid polyprotein, protease, RNA polymerase
Modifications2067..2067:ribosomal_frameshift|2975..2975:ribosomal_frameshift
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KSNSQTDLTK TSQNPDLDLI SLDSDDEGAK SSSLQDKGLS STKKPKRFPV LLTAQTSKDP EDPNPSEVDW DGLEDEAAKY HNPDWPPFLT RPPPYNKATP SAPTVMAVVN PKEELKEKIA QLEEQIKLEE LHQALISKLQ KLKTGNETVT HPDTAGGLSR TPHWPGQHIP KGKCCASREK EEQIPKDIFP VTETVDGQGQ AWRHHNGFDF AVIKELKTAA SQYGATAPYT LAIVESVADN WLTPTDWNTL VRAVLSGGDH LLWKSEFFEN CRDTAKRNQQ AGNGWDFDML TGSGNYSSTD AQMQYDPGLF AQIQAAATKA WRKLPVKGDP GASLTGVKQG PDEPFADFVH RLITTAGRIF GSAEAGVDYV KQLAYENANP ACQAAIRPYR KKTDLTGYIR LCSDIGPSYQ QGLAMAAAFS GQTVKDFLNN KNKEKGGCCF KCGKKGHFAK NCHEHAHNNA EPKVPGLCPR CKRGKHWANE CKSKTDNQGN PIPPHQGNRV EGPAPGPETS LWGSQLCSSQ QKQPISKLTR ATPGSAGLDL CSTSHTVLTP EMGPQALSTG IYGPLPPNTF GLILGRSSIT MKGLQVYPGV IDNDYTGEIK IMAKAVNNIV TVSQGNRIAQ LILLPLIETD NKVQQPYRGQ GSFGSSDIYW VQPITCQKPS LTLWLDDKMF TGLIDTGADV TIIKLEDWPP NWPITDTLTN LRGIGQSNNP KQSSKYLTWR DKENNSGLIK PFVIPNLPVN LWGRDLLSQM KIMMCSPNDI VTAQMLAQGY SPGKGLGKKE NGILHPIPNQ GQSNKKGFGN FLTAAIDILA PQQCAEPITW KSDEPVWVDQ WPLTNDKLAA AQQLVQEQLE AGHITESSSP WNTPIFVIKK KSGKWRLLQD LRAVNATMVL MGALQPGLPS PVAIPQGYLK IIIDLKDCFF SIPLHPSDQK RFAFSLPSTN FKEPMQRFQW KVLPQGMANS PTLCQKYVAT AIHKVRHAWK QMYIIHYMDD ILIAGKDGQQ VLQCFDQLKQ ELTAAGLHIA PEKVQLQDPY TYLGFELNGP KITNQKAVIR KDKLQTLNDF QKLLGDINWL RPYLKLTTGD LKPLFDTLKG DSDPNSHRSL SKEALASLEK VETAIAEQFV THINYSLPLI FLIFNTALTP TGLFWQDNPI MWIHLPASPK KVLLPYYDAI ADLIILGRDH SKKYFGIEPS TIIQPYSKSQ IDWLMQNTEM WPIACASFVG ILDNHYPPNK LIQFCKLHTF VFPQIISKTP LNNALLVFTD GSSTGMAAYT LTDTTIKFQT NLNSAQLVEL QALIAVLSAF PNQPLNIYTD SAYLAHSIPL LETVAQIKHI SETAKLFLQC QQLIYNRSIP FYIGHVRAHS GLPGPIAQGN QRADLATKIV ASNINTNLES AQNAHTLHHL NAQTLRLMFN IPREQARQIV KQCPICVTYL PVPHLGVNPR GLFPNMIWQM DVTHYSEFGN LKYIHVSIDT FSGFLLATLQ TGETTKHVIT HLLHCFSIIG LPKQIKTDNG PGYTSKNFQE FCSTLQIKHI TGIPYNPQGQ GIVERAHLSL KTTIEKIKKG EWYPRKGTPR NILNHALFIL NFLNLDDQNK SAADRFWHNN PKKQFAMVKW KDPLDNTWHG PDPVLIWGRG SVCVYSQTYD AARWLPERLV RQVSNNNQSR E*

Publications