Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200228"

Accession numberr200228 [export]
Locus nameygrl09w
Recode1 namepol_p_tra_ty3
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classEukaryota (Transposable element)
OrganismSaccharomyces cerevisiae [details]

Sequence

Varianttransposable element Ty3, YGRWTY3-1
GenBank IDsM34549.1,Z72895.1,Z72894.1
SequenceDNA of 4645 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event type+1 Frameshifting (position: 856)
Descriptionproduction of fusion protein and set the ratio between two protein products. primary structure downstream of frameshift site have stimulatory effect on frameshifting
ATGAGCTTTA TGGATCAAAT CCCAGGAGGA GGAAATTATC CAAAACTCCC AGTAGAATGC CTTCCTAACT TCCCGATCCA ACCATCTTTG ACCTTCAGAG GTAGAAATGA CTCGCATAAA CTGAAAAACT TTATCTCCGA AATAATGTTA AACATGTCTA TGATATCTTG GCCGAATGAT GCCAGTCGTA TTGTGTACTG CAGAAGACAT TTATTAAACC CCGCTGCTCA GTGGGCTAAT GACTTTGTAC AAGAACAAGG TATACTTGAA ATAACATTCG ACACATTCAT ACAAGGATTA TATCAGCATT TCTATAAGCC ACCAGATATC AATAAAATCT TTAATGCAAT CACGCAACTT TCCGAAGCTA AACTTGGTAT TGAGCGTCTC AACCAACGAT TCAGAAAGAT TTGGGACAGA ATGCCACCAG ACTTCATGAC CGAAAAAGCT GCCATAATGA CATATACTAG GCTATTGACA AAGGAAACCT ATAATATTGT CAGAATGCAC AAACCAGAGA CATTAAAAGA CGCCATGGAA GAGGCTTACC AGACAACTGC ACTAACTGAA AGATTCTTCC CAGGATTCGA ACTTGATGCT GATGGAGACA CTATCATCGG TGCCACAACC CACTTACAAG AAGAATACGA CTCTGACTAT GATTCAGAAG ATAATCTGAC CCAGAATGGA TACGTCCATA CCGTAAGGAC AAGAAGATCT TACAATAAAC CAATGTCAAA TCATCGAAAC AGGAGAAATA ACAACCCATC TAGAGAAGAA TGTATAAAAA ATCGGCTATG CTTCTATTGT AAGAAAGAGG GACATCGCCT GAACGAATGT AGAGCACGTA AGGCGAGTTC TAACCGATCT TGAACTCGAA TCAAAAGACC AACAAACTCC TTTTATCAAA ACCTTACCAA TTGTACACTA TATCGCCATC CCCGAGATGG ACAATACCGC CGAAAAAACC ATAAAAATAC AAAACACGAA AGTAAAAACC CTGTTTGACA GTGGATCACC CACGTCATTT ATCCGAAGAG ATATTGTAGA ACTTCTCAAA TACGAAATCT ACGAGACCCC TCCACTCCGT TTTAGAGGAT TCGTAGCCAC CAAATCCGCC GTTACATCCG AAGCAGTCAC CATTGACCTC AAAATCAATG ACCTGCATAT AACTTTAGCC GCGTACATAC TGGATAACAT GGACTACCAA TTGTTAATTG GAAATCCAAT CTTACGCCGC TACCCGAAAA TCCTGCACAC AGTACTGAAT ACCAGAGAGA GCCCCGACTC CTTAAAGCCC AAGACTTATC GCTCCGAAAC CGTTAATAAC GTTAGAACCT ACTCCGCTGG TAATCGTGGT AACCCCAGAA ACATAAAACT GTCTTTTGCC CCCACCATTC TCGAAGCAAC TGACCCGAAA TCCGCTGGTA ATCGTGGTGA CTCCAGAACC AAAACCCTGT CTCTTGCAAC CACTACTCCT GCAGCAATTG ACCCGCTTAC GACCCTTGAT AACCCAGGTA GTACTCAAAG TACATTTGCG CAATTCCCGA TACCTGAAGA AGCGAGCATC CTAGAAGAGG ATGGAAAATA CTCCAACGTT GTCTCAACCA TTCAGAGTGT AGAACCTAAT GCTACTGATC ACAGCAATAA GGACACCTTT TGCACTTTGC CAGTTTGGTT ACAACAGAAG TATAGAGAGA TCATACGTAA TGATCTCCCA CCAAGACCTG CCGACATTAA TAACATCCCC GTAAAACATG ATATTGAAAT TAAACCTGGC GCAAGACTAC CTCGACTACA GCCATACCAT GTTACAGAAA AGAACGAACA AGAAATCAAC AAAATAGTTC AAAAACTGCT CGATAACAAG TTCATTGTTC CCTCAAAGTC GCCTTGCAGC TCCCCTGTAG TCCTCGTCCC GAAGAAAGAC GGTACCTTCC GACTCTGCGT CGATTACCGC ACCCTGAACA AAGCTACCAT CTCCGACCCA TTCCCATTAC CCAGAATCGA CAACCTATTG AGCCGTATTG GAAATGCCCA GATATTTACC ACGCTAGATT TGCATAGTGG TTACCACCAG ATCCCGATGG AACCCAAAGA CCGCTACAAA ACCGCCTTTG TCACACCATC CGGTAAGTAT GAATATACCG TCATGCCATT TGGCTTAGTC AATGCACCTA GTACATTCGC AAGATACATG GCTGATACAT TTAGAGACCT GAGATTCGTC AATGTTTACC TTGATGATAT ATTAATATTC TCCGAATCTC CAGAAGAACA TTGGAAACAT TTAGACACGG TACTAGAAAG ATTAAAGAAC GAGAACCTCA TTGTTAAGAA GAAAAAATGT AAATTTGCAT CTGAAGAAAC TGAGTTTTTA GGCTATAGTA TTGGAATCCA GAAAATAGCT CCACTACAGC ACAAATGTGC AGCAATCCGA GACTTTCCGA CGCCTAAAAC AGTAAAACAA GCACAGAGAT TTTTAGGAAT GATTAATTAC TACAGACGAT TCATTCCAAA TTGCTCCAAG ATTGCACAGC CAATCCAACT GTTTATTTGT GACAAAAGTC AATGGACAGA AAAACAAGAC AAGGCAATTG ATAAACTAAA AGACGCCTTG TGTAACTCCC CCGTCCTAGT ACCATTCAAC AACAAAGCAA ACTACCGACT TACAACAGAC GCCTCAAAAG ACGGCATTGG TGCTGTTCTA GAAGAAGTCG ACAACAAGAA CAAACTTGTT GGTGTCGTCG GTTACTTCTC TAAATCCTTA GAGAGTGCCC AGAAAAACTA TCCTGCTGGC GAATTAGAAC TACTTGGAAT TATCAAAGCA CTCCACCACT TCCGATATAT GCTTCACGGA AAGCATTTCA CGTTAAGAAC AGACCACATT AGTTTGTTAT CATTACAAAA CAAGAACGAA CCCGCACGAC GCGTGCAACG CTGGTTAGAT GACCTAGCCA CATATGACTT CACCTTAGAA TACCTAGCTG GACCCAAGAA CGTTGTCGCA GATGCCATAT CCCGTGCCGT ATATACTATA ACCCCCGAAA CATCCCGACC TATCGACACA GAAAGCTGGA AATCTTACTA CAAATCAGAC CCATTATGTA GTGCTGTCTT AATTCATATG AAAGAATTGA CACAACACAA CGTCACACCT GAAGATATGT CAGCCTTCCG TAGTTACCAG AAGAAACTCG AACTATCAGA GACCTTCCGA AAGAATTATT CCCTAGAAGA CGAAATGATC TATTACCAAG ACCGACTAGT AGTACCAATA AAACAACAGA ACGCAGTTAT GAGACTATAT CATGACCATA CCTTATTTGG AGGACATTTT GGTGTAACAG TGACCCTTGC GAAAATCAGC CCAATTTACT ATTGGCCAAA ATTACAACAT TCGATCATAC AATACATCAG GACCTGCGTA CAATGTCAAC TAATAAAATC ACACCGACCA CGCTTACATG GACTATTACA ACCACTCCCT ATAGCAGAAG GAAGATGGCT TGATATATCA ATGGATTTTG TGACAGGATT ACCCCCGACA TCAAATAACT TGAATATGAT CCTCGTCGTA GTTGATCGTT TTTCGAAACG CGCTCACTTC ATAGCTACAA GGAAAACCTT AGACGCAACA CAACTAATAG ATCTACTCTT TCGATACATT TTTTCATATC ATGGTTTTCC CAGGACAATA ACCAGTGATA GAGATGTCCG TATGACCGCC GACAAATATC AAGAACTCAC GAAAAGACTA GGAATAAAAT CGACAATGTC TTCCGCGAAC CACCCCCAAA CAGATGGACA ATCCGAACGA ACGATACAGA CATTAAACAG GTTACTAAGA GCCTATGCTT CAACCAATAT TCAGAATTGG CATGTATATT TACCACAAAT CGAATTTGTT TACAATTCTA CACCTACTAG AACACTTGGA AAATCACCAT TTGAAATTGA TTTAGGATAT TTACCGAATA CCCCTGCTAT TAAGTCAGAT GACGAAGTCA ACGCAAGAAG TTTTACTGCC GTAGAACTTG CCAAACACCT CAAAGCCCTT ACCATCCAAA CGAAGGAACA GCTAGAACAC GCTCAAATCG AAATGGAAAC TAATAACAAT CAAAGACGTA AACCCTTATT GTTAAACATA GGAGATCACG TATTAGTGCA TAGAGATGCA TACTTCAAGA AAGGTGCTTA TATGAAAGTA CAACAAATAT ACGTCGGACC ATTTCGAGTT GTCAAGAAAA TAAACGATAA CGCCTACGAA CTAGATTTAA ACTCTCACAA GAAAAAGCAC AGAGTTATTA ATGTACAATT CCTGAAAAAG TTTGTATACC GTCCAGACGC GTACCCAAAG AATAAACCAA TCAGCTCCAC TGAAAGAATT AAGAGAGCAC ACGAAGTTAC TGCACTCATA GGAATAGATA CTACACACAA AACTTACTTA TGTCACATGC AAGATGTAGA CCCAACACTT TCAGTAGAAT ACTCAGAAGC TGAATTTTGC CAAATTCCCG AAAGAACACG AAGATCAATA TTAGCCAACT TTAGACAACT CTACGAAACA CAAGACAACC CTGAGAGAGA GGAAGATGTT GTATCTCAAA ATGAGATATG TCAGTATGAC AATACGTCAC CCTGA

Products

Productygrl09w
Descriptiongag capsid polyprotein
MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML NMSMISWPND ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL YQHFYKPPDI NKIFNAITQL SEAKLGIERL NQRFRKIWDR MPPDFMTEKA AIMTYTRLLT KETYNIVRMH KPETLKDAME EAYQTTALTE RFFPGFELDA DGDTIIGATT HLQEEYDSDY DSEDNLTQNG YVHTVRTRRS YNKPMSNHRN RRNNNPSREE CIKNRLCFYC KKEGHRLNEC RARKASSNRS
Productygrl09w-orf2
Descriptiongag capsid polyprotein, RNA polymerase
Modifications855..857:ribosomal_frameshift
MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML NMSMISWPND ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL YQHFYKPPDI NKIFNAITQL SEAKLGIERL NQRFRKIWDR MPPDFMTEKA AIMTYTRLLT KETYNIVRMH KPETLKDAME EAYQTTALTE RFFPGFELDA DGDTIIGATT HLQEEYDSDY DSEDNLTQNG YVHTVRTRRS YNKPMSNHRN RRNNNPSREE CIKNRLCFYC KKEGHRLNEC RARKAVLTDL ELESKDQQTP FIKTLPIVHY IAIPEMDNTA EKTIKIQNTK VKTLFDSGSP TSFIRRDIVE LLKYEIYETP PLRFRGFVAT KSAVTSEAVT IDLKINDLHI TLAAYILDNM DYQLLIGNPI LRRYPKILHT VLNTRESPDS LKPKTYRSET VNNVRTYSAG NRGNPRNIKL SFAPTILEAT DPKSAGNRGD SRTKTLSLAT TTPAAIDPLT TLDNPGSTQS TFAQFPIPEE ASILEEDGKY SNVVSTIQSV EPNATDHSNK DTFCTLPVWL QQKYREIIRN DLPPRPADIN NIPVKHDIEI KPGARLPRLQ PYHVTEKNEQ EINKIVQKLL DNKFIVPSKS PCSSPVVLVP KKDGTFRLCV DYRTLNKATI SDPFPLPRID NLLSRIGNAQ IFTTLDLHSG YHQIPMEPKD RYKTAFVTPS GKYEYTVMPF GLVNAPSTFA RYMADTFRDL RFVNVYLDDI LIFSESPEEH WKHLDTVLER LKNENLIVKK KKCKFASEET EFLGYSIGIQ KIAPLQHKCA AIRDFPTPKT VKQAQRFLGM INYYRRFIPN CSKIAQPIQL FICDKSQWTE KQDKAIDKLK DALCNSPVLV PFNNKANYRL TTDASKDGIG AVLEEVDNKN KLVGVVGYFS KSLESAQKNY PAGELELLGI IKALHHFRYM LHGKHFTLRT DHISLLSLQN KNEPARRVQR WLDDLATYDF TLEYLAGPKN VVADAISRAV YTITPETSRP IDTESWKSYY KSDPLCSAVL IHMKELTQHN VTPEDMSAFR SYQKKLELSE TFRKNYSLED EMIYYQDRLV VPIKQQNAVM RLYHDHTLFG GHFGVTVTLA KISPIYYWPK LQHSIIQYIR TCVQCQLIKS HRPRLHGLLQ PLPIAEGRWL DISMDFVTGL PPTSNNLNMI LVVVDRFSKR AHFIATRKTL DATQLIDLLF RYIFSYHGFP RTITSDRDVR MTADKYQELT KRLGIKSTMS SANHPQTDGQ SERTIQTLNR LLRAYASTNI QNWHVYLPQI EFVYNSTPTR TLGKSPFEID LGYLPNTPAI KSDDEVNARS FTAVELAKHL KALTIQTKEQ LEHAQIEMET NNNQRRKPLL LNIGDHVLVH RDAYFKKGAY MKVQQIYVGP FRVVKKINDN AYELDLNSHK KKHRVINVQF LKKFVYRPDA YPKNKPISST ERIKRAHEVT ALIGIDTTHK TYLCHMQDVD PTLSVEYSEA EFCQIPERTR RSILANFRQL YETQDNPERE EDVVSQNEIC QYDNTSP

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