Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200231"

Accession numberr200231 [export]
Locus namegag-pol
Recode1 namepol_r_tra_ervpk15
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classEukaryota (Transposable element)
OrganismSus scrofa [details]

Sequence

Variantporcine endogenous retrovirus ERV-PK15
GenBank IDsAF038601.1
SequencemRNA of 2955 nucleotides [sequence]

Recoding event

Event typeReadthrough (position: 1,573)
Descriptionproduction of fusion protein and set the ratio between two protein products
ATGGGACAGA CAGTGACTAC CCCCCTTAGT TTGACTCTCG ACCATTGGAC TGAAGTTAGA TCCAGGGCTC ATAATTTGTC AGTTCAGGTT AAGAAGGGAC CTTGGCAGAC TTTCTGTGCC TCTGAATGGC CAACATTCGA TGTTGGATGG CCATCAGAGG GGACCTTTAA TTCTGAAATT ATCCTGGCTG TTAAGGCAAT CATTTTTCAG ACTGGACCCG GCTCTCATCC TGATCAGGAG CCCTATATCC TTACGTGGCA AGATTTGGCA GAAGATCCTC CGCCATGGGT TAAACCATGG CTAAATAAAC CAAGAAAGCC AGGTCCCCGA ATCCTGGCTC TTGGAGAGAA AAACAAACAC TCGGCCGAAA AAGTCGAGCC CTCTCCTCGT ATCTACCCCG AGATCGAGGA GCCGCCGACT TGGCCGGAAC CCCAACCTGT TCCCCCACCC CCTTATCCAG CACAGGGTGC TGTGAGGGGA CCCTCTGCCC CTCCTGGAGC TCCGGTGGTG GAGGGACCTG CTGCCGGGAC TCGGAGCCGG AGAGGCGCCA CCCCGGAGCG GACAGACGAG ATCGCGATAT TACCGCTGCG CACCTATGGC CCTCCCATGC CAGGGGGCCA ATTGCAGCCC CTCCAGTATT GGCCCTTTTC TTCTGCAGAT CTCTATAATT GGAAAACTAA CCATCCCCCT TTCTCGGAGG ATCCCCAACG CCTCACGGGG TTGGTGGAGT CCCTTATGTT CTCTCACCAG CCTACTTGGG ATGATTGTCA ACAGCTGCTG CAGACACTCT TCACAACCGA GGAGCGAGAG AGAATTCTGT TAGAGGCTAA AAAAAATGTT CCTGGGGCCG ACGGGCGACC CACGCAGTTG CAAAATGAGA TTGACATGGG ATTTCCCTTG ACTCGCCCCG GTTGGGACTA CAACACGGCT GAAGGTAGGG AGAGCTTGAA AATCTATCGC CAGGCTCTGG TGGCGGGTCT CCGGGGCGCC TCAAGACGGC CCACTAATTT GGCTAAGGTA AGAGAGGTGA TGCAGGGACC GAACGAACCT CCCTCGGTAT TTCTTGAGAG GCTCATGGAA GCCTTCAGGC GGTTCACCCC TTTTGATCCT ACCTCAGAGG CCCAGAAAGC CTCAGTGGCC CTGGCCTTCA TTGGGCAGTC GGCTCTGGAT ATCAGGAAGA AACTTCAGAG ACTGGAAGGG TTACAGGAGG CTGAGTTACG TGATCTAGTG AGAGAGGCAG AGAAGGTGTA TTACAGAAGG GAGACAGAAG AGGAGAAGGA ACAGAGAAAA GAAAAGGAGA GAGAAGAAAG GGAGGAAAGA CGTGATAGAC GGCAAGAGAA GAATTTGACT AAGATCTTGG CCGCAGTGGT TGAAGGGAAG AGCAGCAGGG AGAGAGAGAG AGATTTTAGG AAAATTAGGT CAGGCCCTAG ACAGTCAGGG AACCTGGGCA ATAGGACCCC ACTCGACAAG GACCAGTGTG CGTATTGTAA AGAAAAAGGA CACTGGGCAA GGAACTGCCC CAAGAAGGGA AACAAAGGAC CGAAGGTCCT AGCTCTAGAA GAAGATAAAG ATTAGGGGAG ACGGGGTTCG GACCCCCTCC CCGAGCCCAG GGTAACTTTG AAGGTGGAGG GGCAACCAGT TGAGTTCCTG GTTGATACCG GAGCGGAGCA TTCAGTGCTG CTACAACCAT TAGGAAAACT AAAAGAAAAA AAATCCTGGG TGATGGGTGC CACAGGGCAA CGGCAGTATC CATGGACTAC CCGAAGAACC GTTGACTTGG GAGTGGGACG GGTAACCCAC TCGTTTCTGG TCATCCCTGA GTGCCCAGTA CCCCTTCTAG GTAGAGACTT ACTGACCAAG ATGGGAGCTC AAATTTCTTT TGAACAAGGA AGACCAGAAG TGTCTGTGAA TAACAAACCC ATCACTGTGT TGACCCTCCA ATTAGATGAT GAATATCGAC TATATTCTCC CCAAGTAAAG CCTGATCAAG ATATACAGTC CTGGTTGGAG CAGTTTCCCC AAGCCTGGGC AGAAACCGCA GGGATGGGTT TGGCAAAGCA AGTTCCCCCA CAGGTTATTC AACTGAAGGC CAGTGCTACA CCAGTATCAG TCAGACAGTA CCCCTTGAGT AGAGAGGCTC GAGAAGGAAT TTGGCCGCAT GTTCAAAGAT TAATCCAACA GGGCATCCTA GTTCCTGTCC AATCCCCTTG GAATACTCCC CTGCTACCGG TTAGGAAGCC TGGGACCAAT GATTATCGAC CAGTACAGGA CTTGAGAGAG GTCAATAAAA GGGTGCAGGA CATACACCCA ACGGTCCCGA ACCCTTATAA CCTCTTGAGC GCCCTCCCGC CTGAACGGAA CTGGTACACA GTATTGGACT TAAAAGATGC CTTCTTCTGC CTGAGATTAC ACCCCACTAG CCAACCACTT TTTACCTTCG AATGGAGAGA TCCAGGTACG GGAAGAACCG GGCAGCTCAC CTGGACCCGA CTGCCCCAAG GGTTCAAGAA CTCCCCGACC ATCTTTGACG AAGCCCTACA CAGGGACCTG GCCAACTTCA GGATCCAACA CCCTCAGGTG ACCCTCCTCC AGTACGTGGA TGACCTGCTT CTGGCGGGAG CCACCAAACA GGACTGCTTA GAAGGTACGA AGGCACTACT GCTGGAATTG TCTGACCTAG GCTACAGAGC CTCTGCTAAG AAGGCCCAGA TTTGCAGGAG AGAGGTAACA TACTTGGGGT ACAGTTTGCG GGGCGGGCAG CGATGGCTGA CGGAGGCACG GAAGAAAACT GTAGTCCAGA TACCGGCCCC AACCACAGCC AAACAAGTGA GAGAGTTTTT GGGGACAGCT GGATTTTGCA GACTGTGGAT CCCGGGGTTT GCGACCTTAG CAGCCCCACT CTACCCGCTA ACCAAAGAAA AAGGGGGTTG CTTACCTCAG CAGGGAGGGA AATAA

Products

Productgag
Descriptiongag capsid polyprotein
MGQTVTTPLS LTLDHWTEVR SRAHNLSVQV KKGPWQTFCA SEWPTFDVGW PSEGTFNSEI ILAVKAIIFQ TGPGSHPDQE PYILTWQDLA EDPPPWVKPW LNKPRKPGPR ILALGEKNKH SAEKVEPSPR IYPEIEEPPT WPEPQPVPPP PYPAQGAVRG PSAPPGAPVV EGPAAGTRSR RGATPERTDE IAILPLRTYG PPMPGGQLQP LQYWPFSSAD LYNWKTNHPP FSEDPQRLTG LVESLMFSHQ PTWDDCQQLL QTLFTTEERE RILLEAKKNV PGADGRPTQL QNEIDMGFPL TRPGWDYNTA EGRESLKIYR QALVAGLRGA SRRPTNLAKV REVMQGPNEP PSVFLERLME AFRRFTPFDP TSEAQKASVA LAFIGQSALD IRKKLQRLEG LQEAELRDLV REAEKVYYRR ETEEEKEQRK EKEREEREER RDRRQEKNLT KILAAVVEGK SSRERERDFR KIRSGPRQSG NLGNRTPLDK DQCAYCKEKG HWARNCPKKG NKGPKVLALE EDKD
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications1573..1575,aa:OTHER
MGQTVTTPLS LTLDHWTEVR SRAHNLSVQV KKGPWQTFCA SEWPTFDVGW PSEGTFNSEI ILAVKAIIFQ TGPGSHPDQE PYILTWQDLA EDPPPWVKPW LNKPRKPGPR ILALGEKNKH SAEKVEPSPR IYPEIEEPPT WPEPQPVPPP PYPAQGAVRG PSAPPGAPVV EGPAAGTRSR RGATPERTDE IAILPLRTYG PPMPGGQLQP LQYWPFSSAD LYNWKTNHPP FSEDPQRLTG LVESLMFSHQ PTWDDCQQLL QTLFTTEERE RILLEAKKNV PGADGRPTQL QNEIDMGFPL TRPGWDYNTA EGRESLKIYR QALVAGLRGA SRRPTNLAKV REVMQGPNEP PSVFLERLME AFRRFTPFDP TSEAQKASVA LAFIGQSALD IRKKLQRLEG LQEAELRDLV REAEKVYYRR ETEEEKEQRK EKEREEREER RDRRQEKNLT KILAAVVEGK SSRERERDFR KIRSGPRQSG NLGNRTPLDK DQCAYCKEKG HWARNCPKKG NKGPKVLALE EDKDQGRRGS DPLPEPRVTL KVEGQPVEFL VDTGAEHSVL LQPLGKLKEK KSWVMGATGQ RQYPWTTRRT VDLGVGRVTH SFLVIPECPV PLLGRDLLTK MGAQISFEQG RPEVSVNNKP ITVLTLQLDD EYRLYSPQVK PDQDIQSWLE QFPQAWAETA GMGLAKQVPP QVIQLKASAT PVSVRQYPLS REAREGIWPH VQRLIQQGIL VPVQSPWNTP LLPVRKPGTN DYRPVQDLRE VNKRVQDIHP TVPNPYNLLS ALPPERNWYT VLDLKDAFFC LRLHPTSQPL FTFEWRDPGT GRTGQLTWTR LPQGFKNSPT IFDEALHRDL ANFRIQHPQV TLLQYVDDLL LAGATKQDCL EGTKALLLEL SDLGYRASAK KAQICRREVT YLGYSLRGGQ RWLTEARKKT VVQIPAPTTA KQVREFLGTA GFCRLWIPGF ATLAAPLYPL TKEKGGCLPQ QGGK

Publication