Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200233"

Accession numberr200233 [export]
Locus namegag-pol
Recode1 namepol_r_tra_pervmsl
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classEukaryota (Transposable element)
OrganismSus scrofa [details]

Sequence

Variantporcine endogenous retrovirus PERV-MSL
GenBank IDsAF038600.1
SequencemRNA of 5160 nucleotides [sequence]

Recoding event

Event typeReadthrough (position: 1,573)
Descriptionproduction of fusion protein and set the ratio between two protein products
ATGGGACAGA CGGTGACGAC CCCTCTTAGT TTGACTCTCG ACCATTGGAC TGAAGTTAAA TCCAGGGCTC ATAATTTGTC AGTTCAGGTT AAGAAGGGAC CTTGGCAGAC TTTCTGTGTC TCTGAATGGC CGACATTCGA TGTTGGATGG CCATCAGAGG GGACCTTTAA TTCTGAGATT ATCCTGGCTG TTAAAGCAGT TATTTTTCAG ACTGGACCCG GCTCTCATCC CGATCAGGAG CCCTATATCC TTACGTGGCA AGATTTGGCA GAGGATCCTC CGCCATGGGT TAAACCATGG CTGAATAAGC CAAGAAAGCC AGGTCCCCGA ATTCTGGCTC TTGGAGAGAA AAACAAACAC TCGGCTGAAA AAGTCAAGCC CTCTCCTCAT ATCTACCCCG AGATTGAGGA GCCACCGGCT TGGCCGGAAC CCCAATCTGT TCCCCCACCC CCTTATCTGG CACAGGGTGC CGCGAGGGGA CCCTTTGCCC CTCCTGGAGC TCCGGCGGTG GAGGGACCTG CTGCAGGGAC TCGGAGCCGG AGGGGCGCCA CCCCGGAGCG GACAGACGAG ATCGCGACAT TACCGCTGCG CACGTACGGC CCTCCCACAC CGGGGGGCCA ATTGCAGCCC CTCCAGTATT GGCCCTTTTC TTCTGCAGAT CTCTATAATT GGAAAACTAA CCATCCCCCT TTCTCGGAGG ATCCCCAACG CCTCACGGGG TTGGTGGAGT CCCTTATGTT CTCTCACCAG CCTACTTGGG ATGATTGTCA ACAGCTGCTG CAGACACTCT TCACAACCGA GGAGCGAGAG AGAATTCTAT TAGAGGCTAG AAAAAATGTT CCTGGGGCCG ACGGGCGACC CACGCGGTTG CAAAATGAGA TTGACATGGG ATTTCCCTTA ACTCGCCCCG GTTGGGACTA CAACACGGCT GAAGGTAGGG AGAGCTTGAA AATCTATCGC CAGGCTCTGG TGGCGGGTCT CCGGGGCGCC TCAAGACGGC CCACTAATTT GGCTAAGGTA AGAGAAGTGA TGCAGGGACC GAATGAACCC CCCTCTGTTT TTCTTGAGAG GCTCTTGGAA GCCTTCAGGC GGTACACCCC TTTTGATCCC ACCTCAGAGG CCCAAAAAGC CTCAGTGGCT TTGGCCTTTA TAGGACAGTC AGCCTTGGAT ATTAGAAAGA AGCTTCAGAG ACTGGAAGGG TTACAGGAGG CTGAGTTACG TGATCTAGTG AAGGAGGCAG AGAAAGTATA TTACAAAAGG GAGACAGAAG AAGAAAGGGA ACAAAGAAAA GAGAGAGAAA GAGAGGAAAG GGAGGAAAGA CGTAATAAAC GGCAAGAGAA GAATTTGACT AAGATCTTGG CTGCAGTGGT TGAAGGGAAA AGCAATACGG AAAGAGAGAG AGATTTTAGG AAAATTAGGT CAGGCCCTAG ACAGTCAGGG AACCTGGGCA ATAGGACCCC ACTCGACAAG GACCAATGTG CATATTGTAA AGAAAGAGGA CACTGGGCAA GGAACTGCCC CAAGAAGGGA AACAAAGGAC CAAGGATCCT AGCTCTAGAA GAAGATAAAG ATTAGGGGAG ACGGGGTTCG GACCCCCTCC CCGAGCCCAG GGTAACTTTG AAGGTGGAGG GGCAACCAGT TGAGTTCCTG GTTGATACCG GAGCGAAACA TTCAGTGCTA CTACAGCCAT TAGGAAAACT AAAAGATAAA AAATCCTGGG TGATGGGTGC CACAGGGCAA CAACAGTATC CATGGACTAC CCGAAGAACA GTTGACTTGG GAGTGGGACG GGTAACCCAC TCGTTTCTGG TCATACCTGA GTGCCCAGCA CCCCTCTTAG GTAGAGACTT ATTGACCAAG ATGGGAGCAC AAATTTCTTT TGAACAAGGG AAACCAGAAG TGTCTGCAAA TAACAAACCT ATCACTGTGT TGACCCTCCA ATTAGATGAC GAATATCGAC TATACTCTCC CCTAGTAAAG CCTGATCAAA ATATACAATT CTGGTTGGAA CAGTTTCCCC AAGCCTGGGC AGAAACCGCA GGGATGGGTT TGGCAAAGCA AGTTCCCCCA CAAGTTATTC AACTGAAGGC CAGTGCCACA CCAGTGTCAG TCAGACAGTA CCCCTTGAGT AAAGAAGCTC AAGAAGGAAT TCGGCCGCAT GTCCAAAGAT TAATCCAACA GGGCATCCTA GTTCCTGTCC AATCTCCCTG GAATACTCCC CTGCTACCGG TTAGAAAGCC TGGGACTAAT GACTATCGAC CAGTACAGGA CTTGAGAGAG GTCAATAAAC GGGTGCAGGA TATACACCCA ACAGTCCCGA ACCCTTATAA CCTCTTGTGT GCTCTCCCAC CCCAACGGAG CTGGTATACA GTATTGGACT TAAAGGATGC CTTCTTCTGC CTGAGATTAC ACCCCACTAG CCAACCACTT TTTGCCTTCG AATGGAGAGA TCCAGGTACG GGAAGAACCG GGCAGCTCAC CTGGACCCGA CTGCCCCAAG GGTTCAAGAA CTCCCCGACC ATCTTTGACG AAGCCCTACA CAGAGACCTG GCCAACTTCA GGATCCAACA CCCTCAGGTG ACCCTCCTCC AGTACGTGGA TGACCTGCTT CTGGCGGGAG CCACCAAACA GGACTGCTTA GAAGGCACGA AGGCACTACT GCTGGAATTG TCTGACCTAG GCTACAGAGC CTCTGCTAAG AAGGCCCAGA TTTGCAGGAG AGAGGTAACA TACTTGGGGT ACAGTTTACG GGACGGGCAG CGATGGCTGA CGGAGGCACG GAAGAAAACT GTAGTCCAGA TACCGGCCCC AACCACAGCC AAACAAATGA GAGAGTTTTT GGGGACAGCT GGATTTTGCA GACTGTGGAT CCCGGGGTTT GCGACCTTAG CAGCCCCACT CTACCCGCTA ACCAAAGAAA AAGGGGAATT CTCCTGGGCT CCTGAGCACC AGAAGGCATT TGATGCTATC AAAAAGGCCC TGCTGAGCGC ACCTGCTCTG GCCCTCCCTG ACGTAACTAA ACCCTTTACC CTTTATGTGG ATGAGCGTAA GGGAGTAGCC CGGGGAGTTT TAACCCAAAC CCTAGGACCA TGGAGAAGAC CTGTCGCCTA CCTGTCAAAG AAGCTCGATC CTGTAGCCAG TGGTTGGCCC ATATGCCTGA AGGCTATCGC AGCTGTGGCC ATACTGGTCA AGGACGCTGA CAAATTGACT TTGGGACAGA ATATAACTGT AATAGCCCCC CATGCATTGG AGAACATCGT TCGGCAGCCC CCAGACCGAT GGATGACCAA CGCCCGCATG ACCCACTATC AAAGCCTGCT TCTCACAGAG AGGGTCACGT TCGCTCCACC AGCCGCTCTC AACCCTGCCA CTCTTCTGCC TGAAGAGACT GATGAACCAG TGACTCATGA TTGCCATCAA CTATTGATTG AGGAGACTGG GGTCCGCAAG GACCTTACAG ACATACCGCT GACTGGAGAA GTGCTAACCT GGTTCACTGA CGGAAGCAGC TATGTGGTGG AAGGTAAGAG GATGGCTGGG GCGGCGGTGG TGGACGGGAC CCGCACGATC TGGGCCAGCA GCCTGCCGGG AGGAACTTCA GCACAAAAGG CTGAGCTCAT GGCCCTCACG CAAGCTTTGC GGCTGGCCGA AGGGAAATCC ATAAACATTT ATACGGACAG CAGGTATGCC TTTGCGACTG CACACGTACA TGGGGCCATC TATAAACAAA GGGGGTTGCT TACCTCAGCA GGGAGGGAAA TAAAGAACAA AGAGGAAATT CTAAGCCTAT TAGAAGCCGT ACATTTACCA AAAAGGCTAG CTATTATACA CTGTCCTGGA CATCAGAAAG CTAAAGATCT CATATCCAGA GGAAACCAGA TGGCTGACCG GGTTGCCAAG CAGGCAGCCC AGGGTGTTAA CCTTCTGCCT ATAATAGAAA TGCCCAAAGC CCCAGAACCC AGACGACAGT ACACCCTAGA AGACTGGCAA GAGATAAAAA AGATAGACCA GTTCTCTGAG ACTCCGGAAG GGACCTGCTA TACCTCAGAT GGGAAGGAAA TCCTGCCCCA CAAAGAAGGG TTAGAATATG TCCAACAGAT ACATCGTCTA ACCCACCTAG GAACTAAACA CCTGCAGCAG TTGGTCAGAA CATCCCCTTA TCATGTTCTG AGGCTACCAG GAGTGGCTGA CTCGGTGGTC AAACATTGTG TGCCCTGCCA GCTGGTTAAT GCTAATCCTT CCAGAATGCC TCCAGGGAAG AGACTAAGGG GAAGCCACCC AGGCGCTCAC TGGGAAGTGG ACTTCACTGA GGTAAAGCCG GCTAAATACG GAAACAAATA CCTATTGGTT TTTGTAGACA CCTTTTCAGG ATGGGTAGAG GCTTATCCTA CTAAGAAAGA GACTTCAACC GTGGTGGCTA AAAAAATACT GGAAGAAATT TTTCCAAGAT TTGGAATACC TAAGGTAATA GGGTCAGACA ATGGTCCAGC TTTTGTTGCC CACGTAAGTC AGGGACTGGC CAAGATATTG GGGATTGATT GGAAACTGCA TTGTGCATAC AGACCCCAAA GCTCAGGACA GGTAGAGAGG ATGAATAGAA CCATTAAAGA GACCCTTACT AAATTGACCG CGGAGACTGG CGTTAATGAT TGGATAGCTC TCCTGCCCTT TGTGCTTTTT AGGGTTAGGA ACACCCCTGG ACAGTTTGGG CTGACCCCCT ATGAATTACT CTACGGGGGA CCCCCCCCAT TGGTAGAAAT TGCTTCTGTA CATAGTGCTG ATGTGCTGCT TTCCCAGCCT TTGTTCTCTA GGCTCAAGGC ACTTGAGTGG GTGAGACAAC GAGCGTGGAG GCAACTCCGG GAGGCCTACT CAGGAGGAGG AGACTTGCAG ATCCCACATC GTTTCCAAGT GGGAGATTCA GTCTACGTTA GACGCCACCG TGCAGGAAAC CTCGAGACTC GGTGGAAGGG CCCTTATCTC GTACTTTTGA CCACACCAAC GGCTGTGAAA GTCGAAGGAA TCTCCACCTG GATCCATGCA TCCCACGTTA AACCGGCGCC ACCTCCCGAT TCGGGGTGGA AAGCCGAAAA GACTGAAAAT CCCCTTAAGC TTCGCCTCCA TCGCGTGGTT CCTTACTCTG TCAATAACCT CTCAGACTAA

Products

Productgag
Descriptiongag capsid polyprotein
MGQTVTTPLS LTLDHWTEVK SRAHNLSVQV KKGPWQTFCV SEWPTFDVGW PSEGTFNSEI ILAVKAVIFQ TGPGSHPDQE PYILTWQDLA EDPPPWVKPW LNKPRKPGPR ILALGEKNKH SAEKVKPSPH IYPEIEEPPA WPEPQSVPPP PYLAQGAARG PFAPPGAPAV EGPAAGTRSR RGATPERTDE IATLPLRTYG PPTPGGQLQP LQYWPFSSAD LYNWKTNHPP FSEDPQRLTG LVESLMFSHQ PTWDDCQQLL QTLFTTEERE RILLEARKNV PGADGRPTRL QNEIDMGFPL TRPGWDYNTA EGRESLKIYR QALVAGLRGA SRRPTNLAKV REVMQGPNEP PSVFLERLLE AFRRYTPFDP TSEAQKASVA LAFIGQSALD IRKKLQRLEG LQEAELRDLV KEAEKVYYKR ETEEEREQRK EREREEREER RNKRQEKNLT KILAAVVEGK SNTERERDFR KIRSGPRQSG NLGNRTPLDK DQCAYCKERG HWARNCPKKG NKGPRILALE EDKD
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications1573..1575,aa:OTHER
MGQTVTTPLS LTLDHWTEVK SRAHNLSVQV KKGPWQTFCV SEWPTFDVGW PSEGTFNSEI ILAVKAVIFQ TGPGSHPDQE PYILTWQDLA EDPPPWVKPW LNKPRKPGPR ILALGEKNKH SAEKVKPSPH IYPEIEEPPA WPEPQSVPPP PYLAQGAARG PFAPPGAPAV EGPAAGTRSR RGATPERTDE IATLPLRTYG PPTPGGQLQP LQYWPFSSAD LYNWKTNHPP FSEDPQRLTG LVESLMFSHQ PTWDDCQQLL QTLFTTEERE RILLEARKNV PGADGRPTRL QNEIDMGFPL TRPGWDYNTA EGRESLKIYR QALVAGLRGA SRRPTNLAKV REVMQGPNEP PSVFLERLLE AFRRYTPFDP TSEAQKASVA LAFIGQSALD IRKKLQRLEG LQEAELRDLV KEAEKVYYKR ETEEEREQRK EREREEREER RNKRQEKNLT KILAAVVEGK SNTERERDFR KIRSGPRQSG NLGNRTPLDK DQCAYCKERG HWARNCPKKG NKGPRILALE EDKDQGRRGS DPLPEPRVTL KVEGQPVEFL VDTGAKHSVL LQPLGKLKDK KSWVMGATGQ QQYPWTTRRT VDLGVGRVTH SFLVIPECPA PLLGRDLLTK MGAQISFEQG KPEVSANNKP ITVLTLQLDD EYRLYSPLVK PDQNIQFWLE QFPQAWAETA GMGLAKQVPP QVIQLKASAT PVSVRQYPLS KEAQEGIRPH VQRLIQQGIL VPVQSPWNTP LLPVRKPGTN DYRPVQDLRE VNKRVQDIHP TVPNPYNLLC ALPPQRSWYT VLDLKDAFFC LRLHPTSQPL FAFEWRDPGT GRTGQLTWTR LPQGFKNSPT IFDEALHRDL ANFRIQHPQV TLLQYVDDLL LAGATKQDCL EGTKALLLEL SDLGYRASAK KAQICRREVT YLGYSLRDGQ RWLTEARKKT VVQIPAPTTA KQMREFLGTA GFCRLWIPGF ATLAAPLYPL TKEKGEFSWA PEHQKAFDAI KKALLSAPAL ALPDVTKPFT LYVDERKGVA RGVLTQTLGP WRRPVAYLSK KLDPVASGWP ICLKAIAAVA ILVKDADKLT LGQNITVIAP HALENIVRQP PDRWMTNARM THYQSLLLTE RVTFAPPAAL NPATLLPEET DEPVTHDCHQ LLIEETGVRK DLTDIPLTGE VLTWFTDGSS YVVEGKRMAG AAVVDGTRTI WASSLPGGTS AQKAELMALT QALRLAEGKS INIYTDSRYA FATAHVHGAI YKQRGLLTSA GREIKNKEEI LSLLEAVHLP KRLAIIHCPG HQKAKDLISR GNQMADRVAK QAAQGVNLLP IIEMPKAPEP RRQYTLEDWQ EIKKIDQFSE TPEGTCYTSD GKEILPHKEG LEYVQQIHRL THLGTKHLQQ LVRTSPYHVL RLPGVADSVV KHCVPCQLVN ANPSRMPPGK RLRGSHPGAH WEVDFTEVKP AKYGNKYLLV FVDTFSGWVE AYPTKKETST VVAKKILEEI FPRFGIPKVI GSDNGPAFVA HVSQGLAKIL GIDWKLHCAY RPQSSGQVER MNRTIKETLT KLTAETGVND WIALLPFVLF RVRNTPGQFG LTPYELLYGG PPPLVEIASV HSADVLLSQP LFSRLKALEW VRQRAWRQLR EAYSGGGDLQ IPHRFQVGDS VYVRRHRAGN LETRWKGPYL VLLTTPTAVK VEGISTWIHA SHVKPAPPPD SGWKAEKTEN PLKLRLHRVV PYSVNNLSD

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