Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200249"

Accession numberr200249 [export]
Locus namereplicase
Recode1 namepol_r_vir_cardamine
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCardamine chlorotic fleck virus [details]

Sequence

GenBank IDsL16015.1
Sequencess-RNA of 4041 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 779)
Descriptionproduction of fusion protein and set the ratio between two protein products
GGTTTTCCAC GAAATCCAAT TCTTCTTCTC AACCCTCATG GACGCTCTTT TACCGGAGTT TCTCGCCCAC AAGCTTTCGC GTTTAGTGCT CAAATGCTTT GGTATAGGTA GTGATGAGGA AGCACCCCAG CAAATCTTTG TAGGGGAATT CCCCGTATGG GGTGGGGAAA TAGTCCCCCC CCAACCGGAG GAGCTGAATC AACTAGTCAT TCCCCGTAAG TGGGTTAGGT CAATAGGAAG TAGTCTTAAT AGAGTAGTCT TACCACCCTC TAGTGGGGTT GTCGCCTCCC TTGAGGAGAA CTGTGTGGCA CCTTTCGAGG AAGCTAGCGT AGAACAGTTA GAACCAGCTA GTGGTGATAC TGGTGACCTC CCTAGGAGGA AGATAAGGAG ACGAGGGCGA TTCGTCGCGC ATGCGGTGTG TGCTGCAAAG CTGCACTTCA GCGGTTGCCC TACGCAAACG CTAGCCAACC GGTTGGCGGT GTCGAAATGG CTGGTGCAGT ACTGCACTGA AAGAAATGTT ATACCCAGCC ATACGAGAAT AGCTGTGCAA GAGGCTCTTC CACAGGTTTT CCTGCCCGAT GGGCACGACC TGAAGGAAGT TCTGGACCTT CATACTGAAG AGGCCCACGA CAGGCGAAAC GCGCTCCGCA AGCGAGGCAG GCACGTACGT CGATGGTGGG TTCAATTAGC AATGCACCCC ATGACTGGCA GATCATGGCT ACGGGCGTGG AGGAGGCTTA CCGGCCTTCC CGACGACGTG GCTGTGCAAT TTGTCCGCTA GGGGTGCTTA CGGGAATTGG TTGGGCGAGA GACTGCTATC TCTCGGGGGG AACACCCAGC CATGCGCGTA TTCCCGTTAG CACAGCCCCC CAAAATACGA CGCATCTTCC ATATCTGTGG AATGGGCAAT GGTTTAGACT TTGGAGTCCA CAACAACTCA CTCAACAATC TGAGAAGAGG TTTGATGGAA CGAGTCTTTT ACGTCGAAGA TGCGCAGAAA GAACTGAAAC CAGCCCCCCA ACCTCTACCC GACGCGTTCG CTAAGCTTAG CGGAATTCGG CGCAAATTGG TGAAGCTTGC TGGAAATCAT ACCCCTATCC TTAGAGAAGA CTACTCTAAG TTGTATAAGG GCAGGAGAGC AACCATCTAC CAAAATGCGT GCGAATCATT AGCTGATCGA GCGTGTACAC AAGGCGGGAG CGCTGAGCTT AAAACCTTCG TCAAAGCTGA GAAGATTAAT TTTACGGCGA AGAAGGATCC GGCACCTAGG GTTATCCAAC CTAGGGATCC TAGATATAAC ATAGAGGTAG GGAAATATCT GAAATGCTAC GAACACCATC TTTACAGAGC AATTGATAAG ATGTGGTGTG GTCCGACAGT GTTGAAAGGT TACAATGTTG AGGAGATAGG GAACATAATG TCAGACGCTT GGAACCAATT CCAGAAACCG TGTGCTATAG GCTTTGATAT GAAGAGATTC GATCAGCACG TTTCTGTAGA TGCCCTCAAA TGGGAGCATA GCGTCTACAA TGCCAGCTTT AACTGTCCCG ATTTGGCCAA GATGCTAACG TGGCAGCTGA AGAACAAGGG CGTTGGTAGG GCTTCCGATG GATACATCAA GTACCAGGTA GAAGGATGTA GAATGTCAGG TGATGTGAAT ACAGCTATGG GGAACTGTCT CTTGGCTTGT TCCATCACTC GTTATCTAAT GAAGGGGATT AAGAGCAGAC TGATCAATAA TGGAGACGAC TGTGTTGTGT TCTTTGAGAG TGGCGATATG CATGAGGTAC GTGAAAGACT GTGCCGTTGG ATCGATTTCG GATTCCAGTG CATCGCCGAA GAACCGCAGT ACGACCTTGA GAAGGTAGAG TTTTGCCAAA TGTCACCTAT TTATGATGGC GAGGGATGGG TCATGGTTAG GAACCCCCGT GTAAGCTTAT CCAAAGACAG CTACAGCACG ACACAATGGG GCAGCGTCAG AGACGCAGCC AGCTGGTTGG CATCTATCGG AGAGTGCGGC ATGGCCATTG CAGGTGGCAT ACCAATCGTG CAGTCATATT ACAATTGTCT GCTAAGAAAT TTCAAGCATT TGGCGCGAAA TACTAGCAAG AAGAAATTGG ATGTTTCCTT TAACTCGGGA TTCAGTATGT TGGCCCAAAA CGGCAATCGG GGGTCCAAAG AGGTTTCTGA AGCAGCTCGG TACTCATTTT ACGTGGCTTT CGGGTACACC CCTGATGAAC AAAGGGGACT CGAAGGCTAC TATGATAATC TGGCGTTAGA AGCAGCATGG GACCCCGAGG GTTATGATGA AACCCTACTG AATAGATGGA TAATCAATCC GAGTCTGACA ACTCCGTAAA GCGAAGATCT GGGAAGAAGG TCAATAAACA GGTGCGAGGA AGTGAGAAGA GTGCGACGAA GAGGTCGGTG GCGAGCCATG CAGCTCGCTC GTTCAGTCAA CGCCCATCTG GCGATTCTGC TGGGGGTAAT TGGGTTCTGG TTGCTGATAA GATTGAAGTT TCAATATCCT TCAATTTCTG ATCAGTTGCC GGTGCCGTCC CCCTGGGTTA AATACCTAAT CCTAAGCAGT TTCAACTCTC TCTCTCTCGT CTTACTCCTC TGTCATCTGA TACCTGACAT CAAACCAGCA GTAACATACT ACAACACCAC TGACAACACA AAAAGCCAAC ACATCTCGAT CAGCACCGCA AATGGCAATT AAGGAGGACC CAAGATTGGT AAAAATGGCA TCGCTAGGCG TCCCTTGGGC AGTGAAGGTT ACAACGAAGG GGTGGGGCTC TCTCACCACT AAGCAGAAGA TTGCAGCACG AGCTGCGTTG CAGATACCCA TGCGCGTGAC GAAGCAGCCT ACCCCGAAGG TGGTTCGTGT GAGTGCTCCC GCCGCGGTTT CATACCGTGA GGTCACGGGA GCTCCACGAG TCACTACGGC TGGTAAGGTG CTGACACACA CTGCAAGTGA ACTCATCACC ACGCTGAAGA AAAACACCTC ACTGGAGCCG AAGTATGTCG AAGCGATCGT CAACCCAAGC CGGGTTGGCA CATTTAACCA ACTCCCCGAT ATTGCGGCGT CGTACGAAAA ATACAAATTC ACCTCACTCA GGTTCCGCTA CTCGTCCACG TGCCCTACCT CAACCGGAGG AAAGGTCGCG CTAGCGTTTG AGCGTGACGC TGCCAACCCG CTACCTGACA ACCTGACTGC GTTCTACAAT CTAGAAGGCA ACACCTCCAG CAACCCAAGG GATTCCTTCG TTCTGACCGT GCCTTGCGAC AATGTCGCGA GGTTCGTGGC AGACGGGGGC AGCGACCCGA AGCTAGTCGA TTTCGGCAAG CTTCTGGCTG CATCCTACGG GCAAGGGGAA GGTGACGCCA ATGGACTGGG AGAAATCCAC ATAGAGTACA CAGTCCAACT ATACAACCGC CTAGGTTCCG CCCAGAGAAG CCAAATCGGC TCTCTCGACG GCAAGTTCTT GGGACCGAGG CTGGTTGAAG TTACGTCAGG AAAGTCAGAC AAAGGCACCA AATTTACCTT CAGCTTCCAC GGGTGTGGTC TTATACCTAT CCTGTGGTTA GCGAAGCCCC GTTGGCCCCT CACAGCAGGA TCCGCAGTCG CTTGCGAGGT CCTCGGCCAA TCGGGAGATG ATAGTGTGCA ATGGGCTGGT ATAAGAATCA GCGAACGTGA GCAGACAGTT GAATTTGAAC ACACTGAGAC AACACCAGAA GCCAAATGGT CTGTGTCTCG CCTGTAAAGT AAGTAGCCTA ACCTGCTGCA GCAGGAAGTA TTCTAGGTAG TATAGTAACT CTTTCTTCAA CTTCTTACTT AGAAAAACAC AAAAATACCC CCAGCTCGCT TTTGTTTTGA GCTGTGTTAG GGACCAAAAA CGGCGACTCA TCCGTCCTGA GTGGCCTCTG GTGTGGAAAC CAGAGAGTCT TGCGGTAACC AACGAAATCT CTTCGGAGTG GGTGTTGGGG ACCACCAAAT GAAGAAAATA GCCCCTCCCT CGCGCAGGGG GGGGCCAGCC C

Products

Productgag
Descriptiongag capsid polyprotein
MDALLPEFLA HKLSRLVLKC FGIGSDEEAP QQIFVGEFPV WGGEIVPPQP EELNQLVIPR KWVRSIGSSL NRVVLPPSSG VVASLEENCV APFEEASVEQ LEPASGDTGD LPRRKIRRRG RFVAHAVCAA KLHFSGCPTQ TLANRLAVSK WLVQYCTERN VIPSHTRIAV QEALPQVFLP DGHDLKEVLD LHTEEAHDRR NALRKRGRHV RRWWVQLAMH PMTGRSWLRA WRRLTGLPDD VAVQFVR
Productreplicase
DescriptionRNA-dependent RNA polymerase
Modifications779..781,aa:OTHER
MDALLPEFLA HKLSRLVLKC FGIGSDEEAP QQIFVGEFPV WGGEIVPPQP EELNQLVIPR KWVRSIGSSL NRVVLPPSSG VVASLEENCV APFEEASVEQ LEPASGDTGD LPRRKIRRRG RFVAHAVCAA KLHFSGCPTQ TLANRLAVSK WLVQYCTERN VIPSHTRIAV QEALPQVFLP DGHDLKEVLD LHTEEAHDRR NALRKRGRHV RRWWVQLAMH PMTGRSWLRA WRRLTGLPDD VAVQFVRQGC LRELVGRETA ISRGEHPAMR VFPLAQPPKI RRIFHICGMG NGLDFGVHNN SLNNLRRGLM ERVFYVEDAQ KELKPAPQPL PDAFAKLSGI RRKLVKLAGN HTPILREDYS KLYKGRRATI YQNACESLAD RACTQGGSAE LKTFVKAEKI NFTAKKDPAP RVIQPRDPRY NIEVGKYLKC YEHHLYRAID KMWCGPTVLK GYNVEEIGNI MSDAWNQFQK PCAIGFDMKR FDQHVSVDAL KWEHSVYNAS FNCPDLAKML TWQLKNKGVG RASDGYIKYQ VEGCRMSGDV NTAMGNCLLA CSITRYLMKG IKSRLINNGD DCVVFFESGD MHEVRERLCR WIDFGFQCIA EEPQYDLEKV EFCQMSPIYD GEGWVMVRNP RVSLSKDSYS TTQWGSVRDA ASWLASIGEC GMAIAGGIPI VQSYYNCLLR NFKHLARNTS KKKLDVSFNS GFSMLAQNGN RGSKEVSEAA RYSFYVAFGY TPDEQRGLEG YYDNLALEAA WDPEGYDETL LNRWIINPSL TT

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