Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200250"

Accession numberr200250 [export]
Locus nameputative replication gene read-through
Recode1 namepol_r_vir_carmv1,pol_r_vir_carmv2
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCarnation mottle virus [details]
AcronymCarMV

Sequence

GenBank IDsX02986.1
SequenceRNA of 4003 nucleotides [sequence]
OrganisationSequence (1)

Recoding events

Event typeReadthrough (position: 805)
Descriptionproduction of fusion protein and set the ratio between two protein products
Event typeReadthrough (position: 2,359)
Descriptionproduction of fusion protein and set the ratio between two protein products
GGGTAAGCTG GCGGGCAAAC CTACACTCTA TCTTACATAC ATTATATATT CTAACCATCT GCTTTCACTA TGGGATTACC CAGTCTACTA GTGGAAGGCG TTATTGGATG CACTCTAGTT GGTGGTTTGG TGGCTGTTGG TAGCGCAGCG CTGGCCGTTC GGGCGACCAT CGGTGTAGTG GAATTCAATA GGGAGTGTGT GCGCGGGGCG AGAAGGATCG TATCTAGCGG AGGGAGGTGC TTAGTAGTCC AATCCCCTTA TGGCAATCCT AACCAAGGAT TGATAAGGGG TGAAGACGAA GAAATTGATA ACGTGGAGGA GTCAACTCCG GTAGAGTTGA CTCCGTTGAT CGAGGTTAAG GCGGAAGTGG ATGGGAAAGA GGTGGTTGTC TCTAAGAAGC GCGTGGTAAA CAGGCACTTG AGACAACGAT TCGTTCGCTC CATAGCCATC GAAGCCAAAA ACCACTTTGG CGGTGATATC AGCCCAAGCA AGGCCAATTA CCTTTCTGTT TCCAAGTTTC TAACGGGGAA ATGCAAGGAG AGGCATGTTG TGCCCGCTCA CACAAGAGAC TGTGTGAGCG CTGCCATGGT GCTGGTGTTC ACCCCTGACG TCCACGAGAT CAGAATGATG GCAGGATTGG CGTCTGACGC AGCGTACGGA ATAAAGATCG CGATGGCAAG CATACTGAAC AGGAAAGGGT GGTGTTGGAG GCTAATGGTA AATCCATTAG ATAGGGCAAG ATGGTGGGAA ATGTGGTGCG TTGTGAACGG GTTTGACTCC AACAAACCCG TCACCTTTCC CAAATAGGGG GGCCTGTTCT ACCTCAATGG TGTGGAGACG AAAATTCGTC GTGGAGGCCA CCCATCAGTG ATTGAGGTAG ACGGGCAATG TCCTCTAAAA GAGAGAAAAC TCTACGTACA GAATGCCATA ACCACTGGTT ATGAATACAG GGTCCACAAC CATTCGTACG CAAACCTCAG ACGAGGGCTC CTTGAGAGAG TTTTCTATGT TGAGCGCAAC AAGGAGCTAG TCAGCTGTCC GCAACCTGAA CCCGGCAGCT TTAAAGAGAT GGGATACCTG CGACGCAGGT TCCATAGAGT GTGTGGCAAT CATACCCGGA TCTCTGCCAA TGATTTGGTA GATTGTTATC AGGGCAGGAA ACGCACAATT TATGAGAATG CAGCAGCGTC CCTACTTGAT AGAGCTATCG AAAGGAAGGA TGGCGATCTC AAGACCTTTA TTAAGGCAGA GAAATTCAAC GTAAATCTGA AAAGTGATCC TGCTCCTCGG GTTATACAGC CTAGGAGCCC TCGCTACAAT GTGGAGTTGG GCCGGTACTT AAAGAAGTAT GAACACCATG CTTACAAAGC CTTAGACAAG ATCTGGGGAG GACCAACAGT CATGAAAGGA TACACTACAG AGGAGGTAGC ACAGCACATT TGGAGCGCAT GGAATCAATT CCAGACACCT GTAGCCATAG GATTTGACAT GTCAAGATTC GATCAGCATG TGTCTGTAGC CGCGCTCGAG TTCGAACATT CATGCTATTT GGCCTGTTTT GAAGGGGACG CTCATCTCGC CAACTTGCTT AAGATGCAAC TGGTGAATCA TGGCGTGGGT TTTGCGAGCA ATGGAATGTT GCGATACACA AAGGAAGGGT GCAGAATGAG CGGTGACATG AACACTGCCT TGGGCAACTG CTTGTTAGCT TGCCTTATCA CCAAACACTT AATGAAAATC AGGAGCAGAC TGATCAACAA TGGGGATGAC TGTGTGCTTA TTTGCGAAAG AACAGACATC GACTACGTCG TGAGTAATTT AACGACGGGA TGGAGTCGAT TTGGATTCAA TTGCATAGCA GAAGAGCCAG TGTACGAAAT GGAAAAGATC AGATTCTGCC AGATGGCACC GGTGTTTGAT GGAGCAGGCT GGCTGATGGT CAGGGACCCT TTGGTGAGCA TGAGCAAGGA TTCTCACTCC TTAGTGCATT GGAACAACGA AACGAATGCA AAACAATGGC TGAAGTCAGT AGGAATGTGC GGTCTGCGGA TTGCCGGGGG GGTTCCAGTT GTGCAAGAGT TCTACCAAAA ATACGTTGAA ACAGCCGGAA ATGTGAGAGA GAACAAAAAT ATCACAGAGA AGAGTAGTTC TGGGTTCTTT ATGATGGCGG ATCGCGCTAA GCGGGGCTAT TCTGCTGTGT CTGAGGTGTG CCGATTTAGC TTCTACCAGG CATTCGGCAT CACGCCAGAC CAGCAGATCG CGTTGGAGGG TGAGATCAGG TCTCTCACTA TCAACACCAA CGTGGGGCCC CAGTGTGAAG CGGCAGATTC ACTATGGATA TTGAATCGGA AGTACCAGTA GTTGGAAAGC AAATGCTCGC TGGGAATAGA GGAAAACAAA AGACACGTAG ATCGGTGGCC AAGGATGCCA TCCGCAAACC TGCATCTGAT AGTACTAACG GGGGTAATTG GGTTAATGTT GCTGATAAGA TTGAGGTGCA CATTCACTTC AACTTTTAGT TTGCCCCCAC TGGTAACTTT AAATCAGATA ATAGCGTTGT CATTTTGTGG TCTTCTATTA AACAGCATCT CTCGGGCAGA AAGAGCTTGC TATTACAACT ACTCTGTTGA TAGTTCTAAA CAACAACACA TTTCAATAAG TACACCAAAT GGAAAATAAA GGAGAAAAGA TCGCGATGAA TCCCACTGTG CAAACATTGG CGCAGAAGGG GGACAAGTTA GCCGTGAAGT TGGTGACAAG AGGGTGGGCC TCTCTGAGTA CGAACCAGAA GAGGAGAGCT GAAATGCTTG CTGGATACAC TCCAGCGATC CTAGCCTTCA CACCCCGACG ACCACGGATG ACGAACCCTC CTCCAAGAAC CAGTAGGAAT TCACCAGGAC AAGCTGGAAA GTCCATGACG ATGAGTAAGA CCGAACTATT AAGCACCGTC AAAGGTACCA CGGGTGTTAT CCCAAGCTTT GAAGACTGGG TCGTTTCCCC CCGAAACGTA GCCGTCTTCC CTCAACTCTC GCTGCTGGCG ACGAACTTCA ACAAGTACCG CATTACTGCG CTCACTGTGA AGTACTCACC CGCGTGCAGC TTCGAGACCA ATGGGAGGGT GGCTCTGGGA TTCAACGATG ACGCTTCGGA CACACCACCA ACCACCAAGG TTGGATTTTA CGATCTGGGC AAACATGTGG AAACTGCTGC ACAGACAGCT AAGGATCTAG TGATACCAGT AGACGGCAAA ACCCGGTTCA TCAGGGACTC GGCTAGTGAT GATGCCAAAC TAGTCGATTT TGGACGAATA GTCTTGTCAA CATACGGGTT TGACAAGGCT GACACTGTGG TGGGCGAATT GTTTATACAG TACACGATTG TGCTGAGTGA CCCAACCAAG ACGGCCAAAA TTTCACAGGC AAGCAACGAT AAGGTGTCGG ACGGACCAAC GTATGTGGTC CCTTCGGTTA ATGGCAACGA GCTACAACTA AGAGTGGTAG CCGCTGGGAA ATGGTGCATT ATAGTGCGGG GTACGGTTGA GGGAGGCTTC ACCAAACCCA CACTTATTGG GCCGGGAATC AGCGGTGATG TGGACTATGA AAGTGCCAGA CCTATCGCCG TTTGTGAATT GGTGACACAA ATGGAGGGCC AGATATTGAA AATCACCAAG ACCTCAGCAG AACAACCACT CCAATGGGTT GTTTATAGGA TGTGAATGCA ATAGAAAAGT TTGTTAGACA CACACGGCGG GACGTGTTGC CGGAGCTGCC ACTCCGCCCA AGATGGATCG ATATTAACCA TCTTTGGCAA CAGCGTGCGT GGCTAATCGA ACCTAGTAAT TGCATAGCAT CCGACTGTAA CCTGTTCTCT GCTGAATACG AGGGTGGCCT CGTGATCCCA AACCATAAAA GAAACCAACT TGTTGGTGGA AGGGCTTGGA AGTAGGATCA ACCACTGTTT ATTAATTAGG GGTGAGAGTA TTCACTGTAC TCTTTCCCCG CCC

Products

Productgag
MGLPSLLVEG VIGCTLVGGL VAVGSAALAV RATIGVVEFN RECVRGARRI VSSGGRCLVV QSPYGNPNQG LIRGEDEEID NVEESTPVEL TPLIEVKAEV DGKEVVVSKK RVVNRHLRQR FVRSIAIEAK NHFGGDISPS KANYLSVSKF LTGKCKERHV VPAHTRDCVS AAMVLVFTPD VHEIRMMAGL ASDAAYGIKI AMASILNRKG WCWRLMVNPL DRARWWEMWC VVNGFDSNKP VTFPK
Productgag-pro
DescriptionPutative protease
Modifications805..807,aa:OTHER
MGLPSLLVEG VIGCTLVGGL VAVGSAALAV RATIGVVEFN RECVRGARRI VSSGGRCLVV QSPYGNPNQG LIRGEDEEID NVEESTPVEL TPLIEVKAEV DGKEVVVSKK RVVNRHLRQR FVRSIAIEAK NHFGGDISPS KANYLSVSKF LTGKCKERHV VPAHTRDCVS AAMVLVFTPD VHEIRMMAGL ASDAAYGIKI AMASILNRKG WCWRLMVNPL DRARWWEMWC VVNGFDSNKP VTFPKQGGLF YLNGVETKIR RGGHPSVIEV DGQCPLKERK LYVQNAITTG YEYRVHNHSY ANLRRGLLER VFYVERNKEL VSCPQPEPGS FKEMGYLRRR FHRVCGNHTR ISANDLVDCY QGRKRTIYEN AAASLLDRAI ERKDGDLKTF IKAEKFNVNL KSDPAPRVIQ PRSPRYNVEL GRYLKKYEHH AYKALDKIWG GPTVMKGYTT EEVAQHIWSA WNQFQTPVAI GFDMSRFDQH VSVAALEFEH SCYLACFEGD AHLANLLKMQ LVNHGVGFAS NGMLRYTKEG CRMSGDMNTA LGNCLLACLI TKHLMKIRSR LINNGDDCVL ICERTDIDYV VSNLTTGWSR FGFNCIAEEP VYEMEKIRFC QMAPVFDGAG WLMVRDPLVS MSKDSHSLVH WNNETNAKQW LKSVGMCGLR IAGGVPVVQE FYQKYVETAG NVRENKNITE KSSSGFFMMA DRAKRGYSAV SEVCRFSFYQ AFGITPDQQI ALEGEIRSLT INTNVGPQCE AADSLWILNR KY
Productgag-pro-pol
DescriptionRNA-dependent RNA polymerase
Modifications805..807,aa:OTHER|2359..2361,aa:OTHER
MGLPSLLVEG VIGCTLVGGL VAVGSAALAV RATIGVVEFN RECVRGARRI VSSGGRCLVV QSPYGNPNQG LIRGEDEEID NVEESTPVEL TPLIEVKAEV DGKEVVVSKK RVVNRHLRQR FVRSIAIEAK NHFGGDISPS KANYLSVSKF LTGKCKERHV VPAHTRDCVS AAMVLVFTPD VHEIRMMAGL ASDAAYGIKI AMASILNRKG WCWRLMVNPL DRARWWEMWC VVNGFDSNKP VTFPKQGGLF YLNGVETKIR RGGHPSVIEV DGQCPLKERK LYVQNAITTG YEYRVHNHSY ANLRRGLLER VFYVERNKEL VSCPQPEPGS FKEMGYLRRR FHRVCGNHTR ISANDLVDCY QGRKRTIYEN AAASLLDRAI ERKDGDLKTF IKAEKFNVNL KSDPAPRVIQ PRSPRYNVEL GRYLKKYEHH AYKALDKIWG GPTVMKGYTT EEVAQHIWSA WNQFQTPVAI GFDMSRFDQH VSVAALEFEH SCYLACFEGD AHLANLLKMQ LVNHGVGFAS NGMLRYTKEG CRMSGDMNTA LGNCLLACLI TKHLMKIRSR LINNGDDCVL ICERTDIDYV VSNLTTGWSR FGFNCIAEEP VYEMEKIRFC QMAPVFDGAG WLMVRDPLVS MSKDSHSLVH WNNETNAKQW LKSVGMCGLR IAGGVPVVQE FYQKYVETAG NVRENKNITE KSSSGFFMMA DRAKRGYSAV SEVCRFSFYQ AFGITPDQQI ALEGEIRSLT INTNVGPQCE AADSLWILNR KYQQLESKCS LGIEENKRHV DRWPRMPSAN LHLIVLTGVI GLMLLIRLRC TFTSTFSLPP LVTLNQIIAL SFCGLLLNSI SRAERACYYN YSVDSSKQQH ISISTPNG

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