Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200254"

Accession numberr200254 [export]
Locus namepol
Recode1 namepol_r_vir_ccgmv1
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismCucumber green mottle mosaic virus [details]
AcronymCCGMV

Sequence

VariantCucumber green mottle mosaic virus (watermelon strain SH)
GenBank IDsD12505.1
SequenceRNA of 6424 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,493)
Descriptionproduction of fusion protein and set the ratio between two protein products
GTTTTAATTT TTATAATTAA ACAAACAACA ACAACAACAA CAAACAATTT TAAAACAACA ATGGCAAACA TTAATGAACA AATCAACAAC CAACGTGACG CCGCGGCTAG CGGGAGAAAC AATCTCGTTA GCCAATTGGC GTCAAAAAGG GTGTATGACG AGGCTGTTCG CTCGTTGGAT CATCAAGACA GACGCCCGAA AATGAATTTT TCTCGTGTGG TCAGCACAGA GCACACCAGG CTTGTAACTG ACGCGTATCC GGAGTTTTCG ATTAGCTTTA CCGCCACCAA GAACTCTGTA CACTCCCTTG CGGGTGGTCT GAGGCTTCTT GAATTGGAAT ATATGATGAT GCAGGTGCCC TACGGCTCAC CTTGTTATGA CATCGGCGGT AACTATACGC AGCACTTGTT CAAAGGTAGA TCATATGTGC ATTGCTGCAA TCCGTGCCTA GATCTTAAGG ATGTTGCGAG GAATGTGATG TACAACGATA TGATTACGCA ACATGTACAG AGGCACAAGG GATCTGGCGG GTGCAGACCT CTTCCAACTT TCCAGATAGA TGCATTCAGG AGGTACGATA GTTCTCCCTG TGCGGTCACC TGTTCAGACG TTTTCCAAGA GTGTTCCTAT GATTTTGGGA GTGGTAGGGA TAATCATGCA GTCTCGTTGC ATTCAATCTA CGATATCCCT TATTCTTCGA TCGGACCTGC TCTTCATAGG AAGAATGTGC GAGTTTGTTA TGCAGCCTTT CATTTCTCGG AGGCATTGCT TTTAGGTTCG CCTGTAGGTA ATTTAAATAG TATTGGGGCT CAGTTTAGGG TCGATGGTGA TGATGTGCAT TTTCTTTTTA GTGAAGAGTC TACTTTGCAT TATACTCATA GTTTAGAAAA TATCAAGTTA ATCGTGATGC GTACTTACTT TCCTGCTGAT GATAGGTTTG TATATATTAA GGAGTTCATG GTTAAGCGTG TGGATACTTT TTTCTTTAGG TTGGTCAGAG CAGATACACA CATGCTTCAT AAATCTGTGG GGCACTATTC GAAATCGAAG TCTGAGTACT TCGCGCTGAA TACCCCTCCG ATCTTCCAAG ATAAAGCCAC GTTTTCTGTG TGGTTTCCTG AAGCGAAGCG CAAGGTGTTG ATACCCAAGT TTGAACTTTC GAGATTCCTT TCTGGGAATG TGAAAATCTC TAGGATGCTT GTCGATGCTG ATTTCGTCCA TACCATTATT AATCACATTA GCACGTATGA TAACAAGGCC TTAGTGTGGA AGAATGTTCA GTCCTTTGTG GAATCCATAC GTTCAAGAGT AATTGTAAAC GGAGTTTCCG TGAAATCTGA GTGGAACGTA CCGGTTGATC AGCTCACTGA TATCTCGTTC TCGATATTCC TTCTCGTGAA GGTTAGGAAG GTACAGATCG AGTTAATGTC TGATAAAGTT GTAATCGAGG CGAGGGGTTT GCTTCGGAGG TTCGCAGACA GTCTTAAATC TGCCGTAGAA GGACTAGGTG ATTGCGTCTA TGATGCTCTA GTTCAAACCG GCTGGTTTGA CACCTCTAGC GACGAACTGA AAGTATTGCT ACCTGAACCG TTTATGACCT TTTCGGATTA TCTTGAAGGG ATGTACGAGG CAGATGCAAA GATCGAGAGA GAGAGTGTCT CTGAGTTGCT CGCTTCCGGT GATGATTTGT TCAAGAAAAT CGATGAGATA AGAAACAATT ACAGTGGAGT CGAATTTGAT GTAGAGAAAT TCCAAGAATT TTGCAAGGAA CTGAATGTTA ATCCTATGCT AATTGGCCAT GTCATCGAAG CTATTTTTTC GCAGAAGGCT GGGGTAACAG TAACGGGTCT GGGCACGCTC TCTCCTGAGA TGGGCGCTTC TGTTGCGTTA TCCAGTACCT CTGTAGATAC ATGTGAAGAT ATGGATGTAA CTGAAGATAT GGAGGATATA GTGTTGATGG CGGACAAGAG TCATTCTTAC ATGTCCCCTG AAATGGCGAG ATGGGCTGAT GTTAAATATG GCAACAATAA AGGGGCTCTA GTCGAGTACA AAGTCGGAAC CTCGATGACT TTACCTGCCA CCTGGGCAGA GAAAGGTAAG GCTGTCTTAC CGTTGTCGGG GATCTGTGTG AGGAAACCCC AATTTTCGAA GCCGCTTGAT GAGGAAGATG ACTTGAGGTT ATCAAACATG AATTTCTTTA AGGTGAGCGA TCTAAAGTTG AAGAAGACTA TCACTCCAGT CGTTTACACT GGGACCATTC GAGAGAGGCA AATGAAGAAT TATATTGATT ACTTATCGGC CTCTCTTGGT TCCACGCTGG GTAATCTGGA GAGAATCGTG CGGAGTGATT GGAATGGTAC TGAGGAGAGT ATGCAAACGT TCGGGTTGTA TGACTGCGAA AAGTGCAAGT GGTTATTGTT GCCAGCCGAG AAGAAGCACG CATGGGCCGT GGTTCTGGCA AGTGACGATA CCACTCGCAT AATCTTCCTT TCATATGACG AATCTGGTTC TCCTATAATT GATAAGAAAA ACTGGAAGCG ATTTGCTGTC TGTTCCGAGA CCAAAGTCTA TAGTGTAATT CGTAGCTTAG AGGTTCTAAA TAAGGAAGCA ATAGTCGACC CCGGGGTTCA CATAACATTA GTTGACGGAG TGCCGGGTTG TGGAAAGACC GCCGAGATTA TAGCGAGGGT CAATTGGAAA ACTGATCTAG TATTGACTCC CGGAAGGGAG GCAGCTGCTA TGATTAGGCG GAGAGCCTGC GCCCTGCACA AGTCACCTGT GGCAACCAAT GACAACGTCA GAACTTTCGA TTCTTTTGTG ATGAATAGGA AAATCTTCAA GTTTGACGCT GTCTATGTTG ACGAGGGTCT GATGGTCCAT ACGGGATTAC TTAATTTTGC GTTAAAGATC TCAGGTTGTA AAAAAGCCTT CGTCTTTGGT GATGCTAAGC AAATCCCGTT TATAAACAGA GTCATGAATT TCGATTATCC TAAGGAGTTA AGAACTTTAA TAGTCGATAA TGTAGAGCGT AGGTATGTCA CCCATAGGTG TCCTAGAGAT GTCACTAGTT TTCTTAATAC TATCTATAAA GCCGCTGTCG CTACTACTAG TCCGGTTGTA CATTCTGTGA AGGCAATTAA AGTGTCAGGG GCCGGTATTC TGAGGCCTGA GTTGACAAAG ATCAAAGGAA AGATAATAAC GTTTACTCAA TCTGATAAGC AGTCCTTGAT CAAGAGTGGG TACAATGATG TGAATACTGT GCATGAAATT CAGGGAGAAA CCTTTGAGGA GACGGCAGTT GTGCGTGCCA CCCCGACTCC AATAGGTTTG ATTGCCCGTG ATTCACCACA TGTACTAGTG GCCTTAACTA GGCACACTAA GGCAATGGTG TATTATACTG TTGTATTCGA TGCAGTTACA AGTATAATAG CGGATGTGGA AAAGGTCGAT CAGTCGATCT TGACCATGTT TGCTACCACT GTGCCTACCA AATAGCAATT AATGCAGAAT TCGCTGTATG TCCATCGTAA TATTTTCCTC CCTGTTAGTA AAACGGGGTT TTATACAGAC ATGCAGGAGT TCTACGATAG ATGCCTTCCT GGGAATTCCT TCGTACTAAA TGATTTCGAT GCCGTAACCA TGCGGTTGAG GGACAACGAA TTTAACTTAC AACCTTGTAG GCTAACCTTG AGTAATTTAG ATCCGGTACC CGCTTTGATT AAGAATGAAG CGCAGAATTT TCTGATCCCC GTTTTGCGTA CGGCCTGTGA AAGGCCGCGC ATTCCGGGTC TTCTTGAGAA TCTTGTAGCT ATGATAAAGA GGAATATGAA TACTCCTGAT TTAGCTGGGA CCGTAGATAT AACTAACATG TCGATTTCTA TAGTAGATAA CTTCTTTTCT TCTTTTGTTA GGGACGAGGT TTTGCTTGAT CACTTAGATT GTGTTAGGGC TAGTTCCATT CAAAGTTTTT CTGATTGGTT TTCGTGTCAG CCAACCTCAG CGGTTGGCCA GTTAGCTAAT TTCAATTTCA TAGATTTGCC TGCCTTTGAT ACTTATATGC ATATGATTAA GAGGCAACCC AAGAGTCGGT TAGATACTTC GATTCAGTCT GAATATCCGG CCTTGCAAAC TATTGTTTAT CACCCTAAAG TGGTAAATGC AGTTTTTGGT CCGGTTTTCA AGTATTTAAC CACCAAGTTT CTTAGTATGG TAGATAGTTC TAAGTTTTTC TTTTACACTA GGAAAAAACC AGAAGATCTG CAGGAATTTT TCTCAGATCT CTCTTCCCAT TCTGATTATG AGATTCTTGA GCTTGATGTT TCTAAATATG ACAAGTCGCA ATCCGATTTC CACTTCTCTA TTGAGATGGC AATTTGGGAA AAATTAGGGC TGGACGATAT TTTGGCTTGG ATGTGGTCTA TGGGTCACAA AAGAACTATA CTGCAAGATT TCCAAGCCGG GATAAAGACG CTCATTTACT ATCAACGGAA GTCTGGTGAT GTAACTACTT TTATAGGTAA TACCTTTATT ATCGCAGCGT GTGTGGCTAG TATGTTGCCG TTAGATAAGT GTTTTAAAGC TAGTTTTTGT GGTGATGATT CGCTGATCTA CCTTCCTAAG GGTTTGGAGT ATCCTGATAT ACAGGCTACT GCCAACCTTG TTTGGAATTT TGAGGCGAAA CTTTTCCGAA AGAAGTATGG TTACTTCTGC GGGAAGTATA TAATTCACCA TGCCAACGGC TGTATTGTTT ACCCTGACCC TTTAAAATTA ATTAGTAAAT TAGGTAATAA GAGTCTTGTA GGGTATGAGC ATGTTGAGGA GTTTCGTATA TCTCTCCTCG ACGTTGCTCA TAGTTTGTTT AATGGTGCTT ATTTCCATTT ACTCGACGAT GCAATCCACG AATTATTTCC TAATGCTGGG GGTTGCAGTT TTGTAATTAA TTGTTTGTGT AAGTATTTGA GTGATAAGCG CCTTTTCCGT AGTCTTTACA TAGATGTCTC TAAGTAAGGT GTCAGTCGAG AACTCGTTGA AACCTGAGAA GTTTGTCAAA ATCTCTTGGG TCGATAAGTT GCTCCCTAAC TATTTTTCCA TTCTTAAGTA TTTATCTATA ACTGACTTTA GTGTAGTTAA AGCTCAGAGC TATGAATCCC TCGTGCCTGT CAAGTTGTTG CGTGGTGTTG ATCTTACAAA ACACCTTTAT GTCACATTGT TGGGCGTTGT GGTTTCTGGT GTATGGAACG TACCGGAATC CTGTAGGGGT GGTGCTACTG TTGCTCTGGT TGACACAAGG ATGCATTCTG TTGCAGAGGG AACTATATGC AAATTTTCAG CTCCCGCCAC CGTCCGCGAA TTCTCTGTTA GGTTCATACC TAATTATCCT GTCGTGGCTG CGGATGCCCT TCGCGATCCT TGGTCTTTAT TTGTGAGACT CTCTAATGTG GGTATTAAAG ATGGTTTCCA TCCTTTGACT TTAGAGGTCG CTTGTTTAGT CGCTACAACT AACTCTATTA TCAAAAAGGG TCTTAGAGCT TCTGTAGTCG AGTCTGTCGT CTCTTCCGAT CAGTCTATTG TCCTAGATTC CTTATCCGAG AAAGTTGAAC CTTTCTTTGA CAAAGTTCCT ATTTCAGCGG CTGTAATGGC AAGAGATCCC AGTTATAGGT CTAGGTCGCA GTCTGTCGGT GGTCGTGGTA AGCGGCATTC TAAACCTCCA AATCGGAGGT TGGACTCTGC TTCTGAAGAG TCCAGTTCTG TTTCTTTTGA AGATGGCTTA CAATCCGATC ACACCTAGCA AACTTATTGC GTTTAGTGCT TCTTATGTTC CCGTCAGGAC TTTACTTAAT TTTCTAGTTG CTTCACAAGG TACCGCTTTC CAGACTCAAG CGGGAAGAGA TTCTTTCCGC GAGTCCCTGT CTGCGTTACC CTCGTCTGTC GTAGATATTA ATTCTAGATT CCCAGATGCG GGTTTTTACG CTTTCCTCAA CGGTCCTGTG TTGAGGCCTA TCTTCGTTTC GCTTCTCAGC TCCACGGATA CGCGTAATAG GGTCATTGAG GTTGTAGATC CTAGCAATCC TACGACTGCT GAGTCGCTTA ACGCTGTAAA GCGTACTGAT GACGCGTCTA CAGCCGCTAG GGCCGAGATA GATAATTTAA TAGAGTCTAT TTCTAAGGGT TTTGATGTTT ACGATAGGGC TTCATTTGAA GCCGCGTTTT CGGTAGTCTG GTCAGAGGCT ACCACCTCGA AAGCTTAGTT TCGAGGGTCT TCTGATGGTG GTGCACACCA AAGTGCATAG TGCTTTCCCG TTCACTTAAA TCGAACGGTT TGCTCATTGG TTTGCGGAAA CCTCTCACGT GTGACGTTGA AGTTTCTATG GGCAGTAATT CTGCAAGGGG TTCGAATCCC CCCTTTTCCC CGGGTAGGGG CCCA

Products

Productgag
Descriptiongag capsid polyprotein
MANINEQINN QRDAAASGRN NLVSQLASKR VYDEAVRSLD HQDRRPKMNF SRVVSTEHTR LVTDAYPEFS ISFTATKNSV HSLAGGLRLL ELEYMMMQVP YGSPCYDIGG NYTQHLFKGR SYVHCCNPCL DLKDVARNVM YNDMITQHVQ RHKGSGGCRP LPTFQIDAFR RYDSSPCAVT CSDVFQECSY DFGSGRDNHA VSLHSIYDIP YSSIGPALHR KNVRVCYAAF HFSEALLLGS PVGNLNSIGA QFRVDGDDVH FLFSEESTLH YTHSLENIKL IVMRTYFPAD DRFVYIKEFM VKRVDTFFFR LVRADTHMLH KSVGHYSKSK SEYFALNTPP IFQDKATFSV WFPEAKRKVL IPKFELSRFL SGNVKISRML VDADFVHTII NHISTYDNKA LVWKNVQSFV ESIRSRVIVN GVSVKSEWNV PVDQLTDISF SIFLLVKVRK VQIELMSDKV VIEARGLLRR FADSLKSAVE GLGDCVYDAL VQTGWFDTSS DELKVLLPEP FMTFSDYLEG MYEADAKIER ESVSELLASG DDLFKKIDEI RNNYSGVEFD VEKFQEFCKE LNVNPMLIGH VIEAIFSQKA GVTVTGLGTL SPEMGASVAL SSTSVDTCED MDVTEDMEDI VLMADKSHSY MSPEMARWAD VKYGNNKGAL VEYKVGTSMT LPATWAEKGK AVLPLSGICV RKPQFSKPLD EEDDLRLSNM NFFKVSDLKL KKTITPVVYT GTIRERQMKN YIDYLSASLG STLGNLERIV RSDWNGTEES MQTFGLYDCE KCKWLLLPAE KKHAWAVVLA SDDTTRIIFL SYDESGSPII DKKNWKRFAV CSETKVYSVI RSLEVLNKEA IVDPGVHITL VDGVPGCGKT AEIIARVNWK TDLVLTPGRE AAAMIRRRAC ALHKSPVATN DNVRTFDSFV MNRKIFKFDA VYVDEGLMVH TGLLNFALKI SGCKKAFVFG DAKQIPFINR VMNFDYPKEL RTLIVDNVER RYVTHRCPRD VTSFLNTIYK AAVATTSPVV HSVKAIKVSG AGILRPELTK IKGKIITFTQ SDKQSLIKSG YNDVNTVHEI QGETFEETAV VRATPTPIGL IARDSPHVLV ALTRHTKAMV YYTVVFDAVT SIIADVEKVD QSILTMFATT VPTK
Productgag-pol
DescriptionRNA-dependent RNA polymerase
Modifications3493..3495,aa:OTHER
MANINEQINN QRDAAASGRN NLVSQLASKR VYDEAVRSLD HQDRRPKMNF SRVVSTEHTR LVTDAYPEFS ISFTATKNSV HSLAGGLRLL ELEYMMMQVP YGSPCYDIGG NYTQHLFKGR SYVHCCNPCL DLKDVARNVM YNDMITQHVQ RHKGSGGCRP LPTFQIDAFR RYDSSPCAVT CSDVFQECSY DFGSGRDNHA VSLHSIYDIP YSSIGPALHR KNVRVCYAAF HFSEALLLGS PVGNLNSIGA QFRVDGDDVH FLFSEESTLH YTHSLENIKL IVMRTYFPAD DRFVYIKEFM VKRVDTFFFR LVRADTHMLH KSVGHYSKSK SEYFALNTPP IFQDKATFSV WFPEAKRKVL IPKFELSRFL SGNVKISRML VDADFVHTII NHISTYDNKA LVWKNVQSFV ESIRSRVIVN GVSVKSEWNV PVDQLTDISF SIFLLVKVRK VQIELMSDKV VIEARGLLRR FADSLKSAVE GLGDCVYDAL VQTGWFDTSS DELKVLLPEP FMTFSDYLEG MYEADAKIER ESVSELLASG DDLFKKIDEI RNNYSGVEFD VEKFQEFCKE LNVNPMLIGH VIEAIFSQKA GVTVTGLGTL SPEMGASVAL SSTSVDTCED MDVTEDMEDI VLMADKSHSY MSPEMARWAD VKYGNNKGAL VEYKVGTSMT LPATWAEKGK AVLPLSGICV RKPQFSKPLD EEDDLRLSNM NFFKVSDLKL KKTITPVVYT GTIRERQMKN YIDYLSASLG STLGNLERIV RSDWNGTEES MQTFGLYDCE KCKWLLLPAE KKHAWAVVLA SDDTTRIIFL SYDESGSPII DKKNWKRFAV CSETKVYSVI RSLEVLNKEA IVDPGVHITL VDGVPGCGKT AEIIARVNWK TDLVLTPGRE AAAMIRRRAC ALHKSPVATN DNVRTFDSFV MNRKIFKFDA VYVDEGLMVH TGLLNFALKI SGCKKAFVFG DAKQIPFINR VMNFDYPKEL RTLIVDNVER RYVTHRCPRD VTSFLNTIYK AAVATTSPVV HSVKAIKVSG AGILRPELTK IKGKIITFTQ SDKQSLIKSG YNDVNTVHEI QGETFEETAV VRATPTPIGL IARDSPHVLV ALTRHTKAMV YYTVVFDAVT SIIADVEKVD QSILTMFATT VPTKQQLMQN SLYVHRNIFL PVSKTGFYTD MQEFYDRCLP GNSFVLNDFD AVTMRLRDNE FNLQPCRLTL SNLDPVPALI KNEAQNFLIP VLRTACERPR IPGLLENLVA MIKRNMNTPD LAGTVDITNM SISIVDNFFS SFVRDEVLLD HLDCVRASSI QSFSDWFSCQ PTSAVGQLAN FNFIDLPAFD TYMHMIKRQP KSRLDTSIQS EYPALQTIVY HPKVVNAVFG PVFKYLTTKF LSMVDSSKFF FYTRKKPEDL QEFFSDLSSH SDYEILELDV SKYDKSQSDF HFSIEMAIWE KLGLDDILAW MWSMGHKRTI LQDFQAGIKT LIYYQRKSGD VTTFIGNTFI IAACVASMLP LDKCFKASFC GDDSLIYLPK GLEYPDIQAT ANLVWNFEAK LFRKKYGYFC GKYIIHHANG CIVYPDPLKL ISKLGNKSLV GYEHVEEFRI SLLDVAHSLF NGAYFHLLDD AIHELFPNAG GCSFVINCLC KYLSDKRLFR SLYIDVS

Publications