Recode v. 2.0 / Database of translational recoding events.
Details for "r200267"
| Accession number | r200267 [export] |
| Locus name | putative replication gene read-through |
| Recode1 name | pol_r_vir_jinrv1,pol_r_vir_jinrv2 |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Japanese iris necrotic ring virus [details] |
Sequence
| GenBank IDs | D86123.1 |
| Sequence | RNA of 4014 nucleotides [sequence] |
| Organisation | Sequence (1)
|
Recoding events
| Event type | Readthrough (position: 764) |
| Description | production of fusion protein and set the ratio between two protein products. JINRV Accession no. NC_002187; First of two read-through events may yield an 85 kDa product |
| Event type | Readthrough (position: 2,318) |
| Description | production of fusion protein and set the ratio between two protein products. JINRV Accession no. NC_002187; First of two read-through events may yield an 85 kDa product |
GGGTAAACGA GTATATATAC AACGTGAACC CATGTTGTGG TACGAGGAGT TGACGATGAG TCTACTAGGG
TCGAGGTTTG TGCCTAAGCC TCTGGCGATC GTTGGTGGGC TGTCTCTCTG TGTGACTGTC GCTGTGCGGG
AAACTGTGCA AGATGGCATC TCCATGGGGC TCAGTTCATT TGGCGATTAC TGTAGGAACA AGGTCCAAGC
CGGATTAAAC CCGCTGGACG TCAGCCACGA CTTCAAGCAA GCGACACCGC AACATCCTAG CATGGACCTC
ATGCTGGACA ATCCCCAGTT GTGCGAAGAA CCGGAGGATT GCCTTGAGGT CCTGGTGGCG AACGAGCAAG
TGACCAAGAA ACGGGTCAAT CGCCACGCTA GGGGAACATT CGCCGCCCAC GCCGCTATGG CCTGTAAACT
GCACTTCGGG TTGGTTCCAA TGAACACGCG GGCCAACCTC AGCGTAGCAA CCAGGTTCAT CACCAACTAT
TGCCAGGAGA GGCACGTCGT GCCAACCCAC ACGCGGGCAG TAGTGGATGC AGCCATCCCT CTCGTATTCA
CCCCTGACTC TGGTGAGATC GGCATTCTTG TCGCATTAAA CCATCGCGAG AGTCAGATCA GGAGGTTGGC
AGCGCGTGAG GCAACAATTC AGCAAACACC CCTGGCTGAA TTGGTAACCG CTCCTTGGTG TGGGGCGAGT
TGGGTGAGGG TGGCCAGAGT TCTCAGTGGG TATGAGGACT TTACCACCTT CCATTTCTCC AACTAGGGGG
GTCTCCGCGA GATGGGGGGG GTAGAAACAC AGATTGTTCG AGGCGCCCAC CCCAGTCTCA CCGTCTCGCG
GGAAAAGCCA GCCTCCAAGG TTCGCAGAAT TTACCAAATT ACTGGGTTGG ATAGTGGCAT CAATTTTGGC
GTGCACAACA ATAGTTTGAA TAACTTGCGC CGAGGTTTAA TTGAGCGTGT CTACTATGTC GAATCCAATG
GTGTTTTGCA ACCTCCGTTG AAGCCAAAGG TGCACCAATT CCGCAAACTC AAGTACTTCG CCCGTCGTTT
GGTAAACATT GTTGGACCGT ATACCCCGAT CGAGAGGGAG GAATACCCTC TCTTGTATCA GGGCAGGCGT
AAGGCAATCT ACCAGAAGGC GTTAGAGTCC CTGAGTGAGC GACCATGCAC AAGAAAGGAC GCCAAACTCC
GGACCTTTGT CAAAGCCGAG AAGATAAATT TCACCTCTAA GGGTGACCCA GCCCCCAGGG TAATCCAACC
CAGGGACCCT CGATACAATA TCGAGGTTGG GAAGTACCTA AAGAAGGCTG AACATCACAT ATACTCCGCT
ATTGACAGAA TATGGGGGGG TCCTACTGTA CTAAAGGGGT ACACAGTGGA GCAACTGGGA ACCAACATTG
CCAACATCTG GTCCCAATTC CAGAGACCTT GTGCTGTAGG TTTTGATGCC AAGAGATTCG ATCAGCACGT
CTCTGTAGAT GCCCTAAGAT TTGAGCATTC TGTTTACAAT TCGATTTTCC ACAGCCCTGA GTTGGCTAGA
CTACTTAGCT ACCAACTCCA TAACGTGGGT GTGGCCGTGG CCTCTGATGG ATTTGCCAGG TATTCCGTGG
ATGGATGTAG AATGAGCGGT GACATCAACA CAGCGTTGGG TAATTGCCTG CTGAGTTGTG CCATCACCCA
CTTCCTGTGT AGGGGCATAA GGTGTAGACT CATCAACAAC GGCGATGACT GCGTCCTCTT CTTCGAAAGT
TCCGATTTGA CCCTCGTCAA TGAGCGTTTG ACGAAATGGT CCGACTTCGG GTTTTCTGTC AAGTTTGAGG
AACCGGTATA CGAGCTTGAA CGTGTTGAGT TTTGCCAAAT GCAACCAATT TACGCGGGAG GTTGGGTCAT
GTGCCGTAAC CCTTACATAT GCACTTCTAA GGACACCTAT AGCATCACGC CATGGCACAA TCCCAAAAGC
GCACTCAAAT GGGTCGCTTC AGTTGGGGAG TGTGGATTAT CACTTTGTGG GGGCATACCA GTGTTGCAGA
GTTTTTACAG TTGCATGATG GCGCAGAGTG ATGAGAGGAT GAATATCAAA AACGATGTGT GGTTTTCGGA
CAGCGGGTTC GCAAGATTGG CCTCCAATGG CAAGCGCACT AGAGAGCATG TGAGTACCGA AGCCAGGATT
TCCTTCTGGA AAGCTTTTGG TATCCTTCCT GAGACACAGG TGTCCCTGGA AGGGGTGTTC CACTCTTATG
AAAATTGCAA AGCATTTGGT GCGGGGGGTA TAAACTGCGA ACTATGGACT CAGCTTCTGA AACCACAACG
TATGAACTAG ATCCTCCAGG TGAAGAATTA CCGACTGTCA AGCGAGAGAT ACAAAATGCC AGGGGCAGTC
AAGCGACTAA GAGGGCTGTT GCGCGGGATG CTGCGTTGTC TACAGTTCGC TCTGTGGCTA GTCGGGAAGT
TGTTGGTGGG GTTTGGGTGC AGGTCGGCGA GACCTTCACC ACAACCAACC ATTTTCACTT CTGAGCCCCT
CTGGGATAAC GACCTTCTCC TTGTGCTAAT AATCTCACTC ACCTTCACTC TTATATATAT ATTTGCTCAA
CAACAACCAG TGCACCATCA CCACTACTCT GAAAGCAATC ATAAGACACA GCACATCACA ATCGGCACCG
AAAGTCAGAC TCGACAAATT CCCAATGGCG CTACGTGATG AAAAGAAAGT TGCGAAGCTA GCCTCTGATG
GAGTAGCCTG GGCTGTCAAG CTCAGATCTG GTGGGGGTTG GAAAACCCTC ACCACTACCC AAAAGAGGAT
GGCTAGACAA GCGCTGGGAA TGACTCAAGT GCCCATAGCC CAAACTGGGT TGCGGGTAAA TCGTGTGTCC
CAGCCAATCT CTGTGTCCTC TAGGATCACG ACTGGTGAAC CCCGTGTAAC CAACGTTAAA CGCAGTATGA
CTGTCACTTT TTCCGAGATG ATTGGTGTAG TAAGGTCACA CTCCAGCTTG TCCACGGAGT CTTGGGTCCT
CAACCCAAGT GACATTGCTA CGTTCCCTCA ATTATCCGTT TCTGCTGCGA TGTACGAGAA GTACAGGTTC
ACCAATCTAG CCTTCAGATT TGCTCCAAGT TGCCCTACGA CCACAGGTGG AGTAGTAGTA TTAGTCCACG
ACCCTGATTC GAGCGACGAC CTCCCTAGCG ACCCTACCAT GTTATATGAG TATTCAGGAG CTATGCGAAC
CAGTGCTTAC AGCCCAGCTC GCCTCATTGT TCCAACTGAC GGCGCAGCCA GGTTTGTCGG CGACAATCAC
ACAAGTGACC CGAAGCTGAT CAACTTCGGG AAGCTCATTG TTGCCAATTA TGGACAAGGA GCATCTGATC
CTGATATGTT GGGGGAGATC TTTATCGAGT ATACTGTTGT GCTTATTGAT CGGCAGCCAT CTGCATTGAG
TACACAGACA TTATCGGCTG AATCATCGAC AGGACCTAAG CTACTCTCCC GGTTGGTCGA GGGAACCAAG
AGCCCCTACA CCCTTACGTA CAGCTTCAAC TGTGGTGGTA CCTTTGTTGT CAGTTTGTTC TACCCCATCG
GACCAGTTTC CGGACCAGTA TCCGGGTCAG CTACTATTAT CCGAGCCTAT GGGGACGCAC AGAGCCAACA
GGCACAAGTT ATCACCGTTA GGTCACCATG CAGAGGCGGA GACTTCACCC TTGGACTGAA TAGTCCAGGT
GACATACCCA CCGCCTTTGT CACCCGTGCT TAGAAACGAC CATTCTTGGG TTTGCAGCGA GATGCCACGT
GCCAGAGGAT AGTACCACTG GCTGACCCTA CCAGCGTTTG CGAGTTGGTA TGCGTGGATG TAAATTCCAA
GTCTTGTGTC CGACCTAGGC TCCGCCGGCT GGAGCTCGCA TGTGGCAGTG CGAGCAGAGG ATGTCCCGAT
GCATAAAATC CCGTGAGGGT GGGCTTGCTA GGGAGGCCGA CACTGCGTAA TGCAAAACTA CCCTTTTCCC
CTGTGAGGGG GAAGAGGGGG GCCC
Products
MLWYEELTMS LLGSRFVPKP LAIVGGLSLC VTVAVRETVQ DGISMGLSSF GDYCRNKVQA GLNPLDVSHD
FKQATPQHPS MDLMLDNPQL CEEPEDCLEV LVANEQVTKK RVNRHARGTF AAHAAMACKL HFGLVPMNTR
ANLSVATRFI TNYCQERHVV PTHTRAVVDA AIPLVFTPDS GEIGILVALN HRESQIRRLA AREATIQQTP
LAELVTAPWC GASWVRVARV LSGYEDFTTF HFSN
| Product | gag-pro |
| Modifications | 764..766,aa:OTHER |
MLWYEELTMS LLGSRFVPKP LAIVGGLSLC VTVAVRETVQ DGISMGLSSF GDYCRNKVQA GLNPLDVSHD
FKQATPQHPS MDLMLDNPQL CEEPEDCLEV LVANEQVTKK RVNRHARGTF AAHAAMACKL HFGLVPMNTR
ANLSVATRFI TNYCQERHVV PTHTRAVVDA AIPLVFTPDS GEIGILVALN HRESQIRRLA AREATIQQTP
LAELVTAPWC GASWVRVARV LSGYEDFTTF HFSNQGGLRE MGGVETQIVR GAHPSLTVSR EKPASKVRRI
YQITGLDSGI NFGVHNNSLN NLRRGLIERV YYVESNGVLQ PPLKPKVHQF RKLKYFARRL VNIVGPYTPI
EREEYPLLYQ GRRKAIYQKA LESLSERPCT RKDAKLRTFV KAEKINFTSK GDPAPRVIQP RDPRYNIEVG
KYLKKAEHHI YSAIDRIWGG PTVLKGYTVE QLGTNIANIW SQFQRPCAVG FDAKRFDQHV SVDALRFEHS
VYNSIFHSPE LARLLSYQLH NVGVAVASDG FARYSVDGCR MSGDINTALG NCLLSCAITH FLCRGIRCRL
INNGDDCVLF FESSDLTLVN ERLTKWSDFG FSVKFEEPVY ELERVEFCQM QPIYAGGWVM CRNPYICTSK
DTYSITPWHN PKSALKWVAS VGECGLSLCG GIPVLQSFYS CMMAQSDERM NIKNDVWFSD SGFARLASNG
KRTREHVSTE ARISFWKAFG ILPETQVSLE GVFHSYENCK AFGAGGINCE LWTQLLKPQR MN
| Product | gag-pro-pol |
| Modifications | 764..766,aa:OTHER|2318..2320,aa:OTHER |
MLWYEELTMS LLGSRFVPKP LAIVGGLSLC VTVAVRETVQ DGISMGLSSF GDYCRNKVQA GLNPLDVSHD
FKQATPQHPS MDLMLDNPQL CEEPEDCLEV LVANEQVTKK RVNRHARGTF AAHAAMACKL HFGLVPMNTR
ANLSVATRFI TNYCQERHVV PTHTRAVVDA AIPLVFTPDS GEIGILVALN HRESQIRRLA AREATIQQTP
LAELVTAPWC GASWVRVARV LSGYEDFTTF HFSNQGGLRE MGGVETQIVR GAHPSLTVSR EKPASKVRRI
YQITGLDSGI NFGVHNNSLN NLRRGLIERV YYVESNGVLQ PPLKPKVHQF RKLKYFARRL VNIVGPYTPI
EREEYPLLYQ GRRKAIYQKA LESLSERPCT RKDAKLRTFV KAEKINFTSK GDPAPRVIQP RDPRYNIEVG
KYLKKAEHHI YSAIDRIWGG PTVLKGYTVE QLGTNIANIW SQFQRPCAVG FDAKRFDQHV SVDALRFEHS
VYNSIFHSPE LARLLSYQLH NVGVAVASDG FARYSVDGCR MSGDINTALG NCLLSCAITH FLCRGIRCRL
INNGDDCVLF FESSDLTLVN ERLTKWSDFG FSVKFEEPVY ELERVEFCQM QPIYAGGWVM CRNPYICTSK
DTYSITPWHN PKSALKWVAS VGECGLSLCG GIPVLQSFYS CMMAQSDERM NIKNDVWFSD SGFARLASNG
KRTREHVSTE ARISFWKAFG ILPETQVSLE GVFHSYENCK AFGAGGINCE LWTQLLKPQR MNQILQVKNY
RLSSERYKMP GAVKRLRGLL RGMLRCLQFA LWLVGKLLVG FGCRSARPSP QPTIFTSEPL WDNDLLLVLI
ISLTFTLIYI FAQQQPVHHH HYSESNHKTQ HITIGTESQT RQIPNGAT
Publications
- Harrell L, Melcher U, Atkins JF. (2002) Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res. 30(9):2011-2017. [abstract]
- Takemoto Y, Kanehira T, Shinohara M, Yamashita S, Hibi T. (2000) The nucleotide sequence and genome organization of Japanese iris necrotic ring virus, a new species in the genus Carmovirus. Arch Virol. 145(3):651-657. [abstract]