Recode v. 2.0 / Database of translational recoding events.
Details for "r200269"
| Accession number | r200269 [export] |
| Locus name | RdRp readthrough |
| Recode1 name | pol_r_vir_lwsv |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Leek white stripe virus [details] |
| Acronym | LWSV |
Sequence
| GenBank IDs | X94560.1 |
| Sequence | RNA of 2184 nucleotides [sequence] |
| Organisation | Sequence (1)
|
Recoding event
| Event type | Readthrough (position: 619) |
| Description | production of fusion protein and set the ratio between two protein products. LWSV; Accession no. NC_001822 |
ATGCATACTC CTCAATGTAT CGCACGCTTC GGCACTACAT GTCACACACA CATCCGCACC GCACGTCTCC
TTTATGTCAA AACCACTTAC TTTCAACGCT TTCTTTTTAT GTTTTTTGTT TATTCCGCTG TTCCTGTGTT
GTTTGTACCC ATTCTTTTCA TCGCTTTTTT TCACCGGTTT TTCAAGCTGC AGCTGGGGTT TTCCCCCGAA
GCTACAGCCC TTATGCATAG GTTCGTGGAC CTCTTTTCAC GGGACGATGA GCCTGTCATC ACAGAGACTT
CATGCAATGT AGATTTCCTT CCTGGACCAG AAAGTAGGAA AGAAAATCTT GTAGCTCCTA AGAGAAGGAA
TCACTACATT GTAAAAGTCG CTATGGCAGC AAAGTCCCAA GTGGGGTTAC TCGGCAATTC TAGGGCTAAT
GAGCTTGTAT ATGCCAGGTT GTGTAGGGAG GAGATGGTTA AGCATGGCGT AAGACCATCG CATATTGCGC
GGATGGTTCC ATTGGCGGTA GACTGTCACT GTTTTATCCC CATGGATGAG GATATCATGG CAGCGGAGAT
GATGAGGACG GATGTTATGC GTAGCAGACG CAAGGACATG GGGGATTCCC ATGCCAAATA GGGGGGCCTA
TTAACCACAC ATGGGTTCAC CACTCCTACA TGGAGGGGTG AACCTGCGGG TCTTAGTGTG GTTAAAGGAC
CTCCCTTATC AAAACCCCGT AAATTGTATC GTTTTACAGG GTTTGGTGCC AATATACGAT ACGGAGTGCA
TGATCACTCC TTGGGTAATG TACGGAGGGG CCTGGTAGAG CGAGTTTTCA TGGTTGAGAA ATCTGGAAAG
CTCGAGTACA CACCAAAACC CACCCCTGGC GCATTTAATC AACTATCTCG GTTCACTCGG GCATTGTTAC
CTTTCTTGAC CAAGACCACC AGACTTACAA CCAAAGAATT TCTTGGGTTC TATACTGGTC GCAAGTTAGA
GAGGTATACA AAGGCAAGTG AGTCGTTAGA GGTGATCTCC TTTCAGGAGA AAGATAGTTG GTTGAGTACG
TTTGTTAAGG CTGAGAAAAT AAATATCACA GCTAAACCCG ACCCGGCTCC ACGGGTGATA CAGCCTAGGG
ATCCTAGGTA TAATGTGGAG TTGGGGCGCT ATTTGCGCAT AGTGAAGAGT ATCTGTTCAA GGCTATTGAT
CGCCTTATTT GGTGGTAGAA CCATATTTAA AGGGATCAAT GCTGACGAGG CTGGAGTGGA GATGAAGGAG
ATATGGGACT CATTTGTTGA TCCTATTGGC ATCGGGATGG ATGCCAGTAG GTTCGATCAA CATATCAGTG
TTGAGGCTTT ACAGTTTGAA CACAAGATGT GGCTTGAGAT GTTCCCAGTA TCGCAGAGGA AGCACCTGAA
AAGGTTGCTT GACCTTCAAC TCCACAATCG AGGTCTAGCT CGTTGTCCTG ATGGTACTGC TAGGTATAAG
GTGGATGGAT GTCGCATGTC CGGTGACATG AATACATCCA GTGGTAATTG CTTCATTATG TGTGCAACAG
TTTGGAACTG GTGCACTCGT CTTAATCTTA AGCACTTTCG GCTCGCCAAC AATGGCGATG ATTGCATGGT
GTTCATGGAG AGACATAATG AGGAGTCATT CCGTCGAGGT TTGATCGATT ACTACACTGG GTTAGGGTTT
ACGATGAAAG TTGAGGAGAC GGTAGATGTC CTCGAGAGGG TCGAGTTTTG CCAAACTAGA CCAGTACTCG
TGGATGGTAG CTACCGCATG ATCCGCAATT TGCATCAAGG TCTCTCAAAA GACCTACATT CCCTAACAGA
CCTAGCAGGT GTCGGAGCCG CTCAAGCTTG GGTGAGTGCC GTTGGGGAGG GTGGTAGAGT GCTTAATGAT
GGGGTCCCAG TTTTGGGGTC CTTCTATAAG CAATTTCCTT TAGGTAGCAT GCCTAAGAGC GGAACTGATA
TGCACGAGCA TATCAATGAT GCATGGAAAT ATAAGTTTGG TAGGAAAGGT TCCTATCAAA ACTTACAACC
TACCCCCTGT TCCAGGTTCT CATTTTGGCT TGCATTCGGG ATTTTGCCCG AAGAACAGAT TGCCTTAGAA
GAGGGGTTTT CTCCCATTTC TTTCCAACAT CAGTTGGAAG ATAATGGAGA GGAGGCCTCT CTGCTCGTGT
TTTCTAGGGC ATGA
Product
| Product | RdRp |
| Description | RNA-dependent RNA polymerase |
| Modifications | 619..621,aa:OTHER |
MHTPQCIARF GTTCHTHIRT ARLLYVKTTY FQRFLFMFFV YSAVPVLFVP ILFIAFFHRF FKLQLGFSPE
ATALMHRFVD LFSRDDEPVI TETSCNVDFL PGPESRKENL VAPKRRNHYI VKVAMAAKSQ VGLLGNSRAN
ELVYARLCRE EMVKHGVRPS HIARMVPLAV DCHCFIPMDE DIMAAEMMRT DVMRSRRKDM GDSHAKQGGL
LTTHGFTTPT WRGEPAGLSV VKGPPLSKPR KLYRFTGFGA NIRYGVHDHS LGNVRRGLVE RVFMVEKSGK
LEYTPKPTPG AFNQLSRFTR ALLPFLTKTT RLTTKEFLGF YTGRKLERYT KASESLEVIS FQEKDSWLST
FVKAEKINIT AKPDPAPRVI QPRDPRYNVE LGRYLRIVKS ICSRLLIALF GGRTIFKGIN ADEAGVEMKE
IWDSFVDPIG IGMDASRFDQ HISVEALQFE HKMWLEMFPV SQRKHLKRLL DLQLHNRGLA RCPDGTARYK
VDGCRMSGDM NTSSGNCFIM CATVWNWCTR LNLKHFRLAN NGDDCMVFME RHNEESFRRG LIDYYTGLGF
TMKVEETVDV LERVEFCQTR PVLVDGSYRM IRNLHQGLSK DLHSLTDLAG VGAAQAWVSA VGEGGRVLND
GVPVLGSFYK QFPLGSMPKS GTDMHEHIND AWKYKFGRKG SYQNLQPTPC SRFSFWLAFG ILPEEQIALE
EGFSPISFQH QLEDNGEEAS LLVFSRA
Publications
- Lot H, Rubino L, Delecolle B, Jacquemond M, Turturo C, Russo M. (1996) Characterization, nucleotide sequence and genome organization of leek white stripe virus, a putative new species of the genus Necrovirus. Arch Virol. 141(12):2375-2386. [abstract]
- Harrell L, Melcher U, Atkins JF. (2002) Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res. 30(9):2011-2017. [abstract]