Recode v. 2.0 / Database of translational recoding events.
Details for "r200272"
| Accession number | r200272 [export] |
| Locus name | p89 |
| Recode1 name | pol_r_vir_melon |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Melon necrotic spot virus [details] |
| Acronym | MNSV |
Sequence
| GenBank IDs | M29671.1,D12536.1 |
| Sequence | ss-RNA of 4266 nucleotides [sequence] |
| Organisation | Sequence (1)
|
Recoding event
| Event type | Readthrough (position: 892) |
| Description | production of fusion protein and set the ratio between two protein products. |
NGATTACTCT AGCCGGATCC CCGACTCTCT TATTTCCTTA AGTTAGTTCG TGTATTGATT ATCTGTCTTG
ATCAGTATAG GTTAGCAATG GATACTGGTT TGAAATTTCT TGTTTCTGGG GGTTTAGCCA CCTCATCTGT
TATTAGGAAA GTGAGTGCTG TGAGTTCATT GGATTCGTCC CTTCCTTCAT CATCTATATT ATCTGCCATC
CATGGGTCTT GGACTAGTGC TATCAGCCAC GATTGTAGTA AGATTGCCAA GGTTGCCGCC ATAGTTGGGA
TTGGTTATCT TGGGGTTAGG ATTGGTGCCG CTTGGTGCCG CCGTACTCCC GGAATAACGA ATTCCATAAT
CACCTATGGG GAAGAAGTGG TTGAGCAAGT GAAGGTAGAT ATTGATGAAG ATGCTGAAGA GGAGTCCGAT
ATTGGTGAGG AAATTGTGGT TGGTACGATA GGTATTGGTA TACACACAAA CGTCAACCCT GAAGTTCGAG
CTAAGCGCAG ACATAGATCG AGGCCATTCA TCAAGAAGAT CGTGAATTTA ACGAAGAATC ACTTCGGTGG
ATGCCCCGAC TCTAGTAAAT CGAACGTCAT GGCTGTAAGT AAATTCGTTT ATGAACAATG TAAACAGCAC
AATTGTCTTC CACATCAAAC GAGATTGATC ATGAGTATTG CAGTTCCATT GGTGTTAAGT CCCGACATGT
ACGACATTTC CAGCAAAGCT CTGCTAAACA GCGAGATATT GACAGAAAAC AGAGCCACGC TGGACCGCCT
CAAAACTCTC GACGGGTGGC TAACACACTT GGTGTGCCAC CCCCTTAGCG CGAAGGCTTG GAGGCGGGCA
ATTGACAACT TGTGTGGTCT TCCAGATTGG AAGGCTTTCA AGTTGGTCAA CTAGGGGTGC CTGGAGGAGC
TCGCTGGGTT CTGTACTTCG GTACGGAGAG GGACACACCC AGACATGACC GAGTTTCCTC AGGATCGTCC
CATTAAGACA CGCAAACTGT ATTGTTTAGG GGGAGTTGGA ACTAGCGTGA AGTTCAACGT GCACAATAAC
TCTCTAGCTA ACCTTCGGCG CGGTCTAGTT GAGCGCGTTT TCTTTGTTGA AAATGATAAG AAGGAACTGG
AGCCTGCCCC TAAACCTCTT AGTGGTGCGT TTGATCGCTT AACTTGGTTT CGTCGGAAAC TCCATAGTAT
TGTGGGTACT CATTCCAGTA TTAGTCCAGG TCAGTTCTTG GACTTCTATA CTGGCAGGAG GCGCACGATT
TATGAAGGTG CTGTGAAATC GTTGGAGGGG TTAAGTGTTC AACGAAGGGA TGCCTATCTG AAAACGTTTG
TTAAAGCGGA GAAGATTAAT ACCACTAAGA AACCTGACCC AGCTCCGCGG GTTATACAAC CGAGGAACGT
AAGATACAAC GTTGAGGTTG GTCGTTATCT ACGTAGGTTT GAGCATTACC TCTATCGAGG AATTGACGAA
ATCTGGAATG GCCCCACCAT AATAAAAGGA TACACTGTCG AGCAAATTGG GAAAATCGCC CGTGACGCAT
GGGACTCCTT CGTTAGTCCT GTAGCAATCG GATTTGACAT GAAAAGGTTC GACCAACATG TATCCTCCGA
CGCTCTTAAA TGGGAACATA GTGTTTATCT TGACGCTTTT TGCCACGACT CATATCTTGC AGAATTGTTG
AAGTGGCAAT TAGTTAATAA GGGTGTTGGG TATGCTAGTG ATGGAATGAT TAAATATAAG GTTGATGGGT
GCCGGATGAG TGGTGACATG AATACAGCTA TGGGTAACTG TTTGATTGCC TGTGCCATCA CGCATGATTT
CTTCCGTAGT CGTGGTATCA GGGCGCGTTT GATGAACAAT GGTGATGACT GTGTCGTAAT ATGCGAAAAA
GAATGTGCCG CGGTGGTTAA AGCCGACATG GTAAGGCACT GGAGACAATT CGGGTTTCAA TGCGAACTCG
AATGCGATGC AGAAATCTTC GAGCAAATTG AGTTTTGTCA AATGCGGCCT GTGTACGACG GGGAAAAATA
TGTGATGGTA CGGAATCCCT TGGTTAGCCT ATCCAAAGAT TCCTACTCAG TCGGCCCTTG GAATGGAATC
AACCATGCAC GCAAGTGGGT CAATGCAGTT GGCTTGTGTG GCTTATCCCT CACTGGTGGA ATTCCTGTTG
TCCAAAGTTA TTATAATATG ATGATCCGCA ACACTCAGTC CGTGAACAGT TCTGGCATAC TTCGCGATGT
CAGTTTTGCT AGTGGATTTC GGGAGTTAGC GCGATTGGGT AACAGGAAAA GTGGTGCCAT ATCTGAAGAC
GCCCGTTTTA GCTTTTATCT CGCATTTGGC ATTACTCCAG ATTTACAACG TGCCATGGAA AGTGACTATG
ATGCTCATAC TATAGAGTGG GGTTTCGTGC CCCAGGGAAA TCCTAGAATA CAGCCAATCT CATGGACTCT
CAACGAACTG TAGAATTAAC TAATCCTCGG GGAAGAAGTA AAGAACGTGG TGACAGCGGG GGAAAACAGA
AGAACTCAAT GGGGCGAAAG ATAGCCAATG ATGCTATCTC TGAATCGAAG CAAGGAGTTA TGGGTGCCAG
CACATACATT GCTGATAAAA TTAAGGTGAC TATTAACTTT AATTTTTAGT GTATGGCTTG TTGCCGTTGT
GACTCCAGCC CCGGGGATTA CTCTGGAGCA TTGCTTATAT TATTTATCTC ATTTGTTTTC TTTTATATTA
CCTCGCTTAG CCCGCAAGGA AATACTTACG TTCATCACTT CGATAGTTCT TCCGTTAAAA CACAATACGT
TGGCATCTCT ACAAATGGCG ATGGTTAAAC GCATTAATAA TTTACCCACA GTGAAGCTTG CTAAGCAGGC
TCTACCCCTG CTTGCGAATC CTAAACTTGT AAATAAAGCT ATAGATGTGG TTCCTTTGGT CGTCCAAGGT
GGTCGGAAAT TGTCCAAGGC TGCTAAGCGG TTGCTTGGCG CTTATGGAGG CAACATTTCG TACACTGAGG
GTGCCAAACC GGGTGCAATA TCAGCTCCTG TCGCTATTAG TCGGCGAGTG GCTGGTATGA AGCCTAGGTT
TGTCAGATCT GAAGGATCTG TGAAGATAGT TCATAGGGAG TTTATTGCCT CTGTTCTTCC TTCGAGTGAT
CTCACTGTCA ATAATGGTGA TGTCAATATC GGTAAGTATA GAGTCAATCC TAGTAATAAC GCTTTATTCA
CCTGGCTTCA GGGACAAGCT CAACTATATG ATATGTACAG ATTTACTCGG CTCCGTATCA CCTACATTCC
TACTACCGGA TCCACTTCCA CGGGTCGTGT CTCTCTCCTC TGGGATAGAG ATTCTCAGGA CCCCCTCCCT
ATAGACCGTG CTGCCATTAG CTCTTATGCT CATTCCGCTG ATTCAGCGCC TTGGGCTGAG AATGTTCTAG
TGGTCCCATG TGACAATACG TGGAGGTACA TGAATGATAC CAATGCTGTC GACCGGAAGT TGGTTGATTT
TGGGCAGTTC TTATTCGCTA CTTATTCTGG TGCTGGTAGC ACCGCCCATG GTGATCTTTA TGTTGAGTAT
GCTGTAGAAT TTAAGGACCC CCAGCCTATC GCTGGGATGG TATGTATGTT TGATCGCTTG GTCTCTCTTT
CCGAAGTTGG ATCCACTATC AAGGGTGTCA ATTACATTGC TGATCGTGAT GTGATAACTA CTGGGGGTAA
TATTGGTGTT AACATCAATA TTCCCGGGAC TTATCTCGTC ACGATTGTTC TTAATGCTAC ATCGATTGGT
CCCCTCACCT TCACTGGTAA TTCTAAACTT GTAGGCAACA GTCTTAATCT TACCAGCAGT GGTGCATCTG
CTCTTACGTT CACCCTTAAC TCCACCGGTG TGCCCAACAG TAGCGATTCT TCATTCTCTG TGGGTACCGT
TGTTGCCTTG ACTAGGGTGC GTATGACGAT CACTCGCTGC TCTCCAGAAA CTGCTTACCT CGCCTAATTT
GATTTACTGC ACTCCAAATC CGGTCTCCCT TGTTCCTACC TGTTCTCAGC CTGATATCTG TTCTGGTGTC
CTATAGGCGT CCTTGTCGTG TGTAGTGCGG TCTGGCTAAC CGTAATGGCG TATCGGCTTG GATTTCCGAT
GATTTGGCTC CGGGATGTAC GACATAGCTG AAGATGGTTG GAGTTTGGTG GACCACCGCT AGCAAAATAC
ACTCTGTGTG GGGCGTGCTA GTGGATAGTC ATGTATGTTT GAGATGGGTT ATAGGCCCAT CCCTTT
Products
| Product | gag |
| Description | p89, gag capsid polyprotein |
MDTGLKFLVS GGLATSSVIR KVSAVSSLDS SLPSSSILSA IHGSWTSAIS HDCSKIAKVA AIVGIGYLGV
RIGAAWCRRT PGITNSIITY GEEVVEQVKV DIDEDAEEES DIGEEIVVGT IGIGIHTNVN PEVRAKRRHR
SRPFIKKIVN LTKNHFGGCP DSSKSNVMAV SKFVYEQCKQ HNCLPHQTRL IMSIAVPLVL SPDMYDISSK
ALLNSEILTE NRATLDRLKT LDGWLTHLVC HPLSAKAWRR AIDNLCGLPD WKAFKLVN
| Product | gag-pol |
| Description | gag capsid polyprotein, RNA-dependent RNA polymerase |
| Modifications | 892..894,aa:OTHER |
MDTGLKFLVS GGLATSSVIR KVSAVSSLDS SLPSSSILSA IHGSWTSAIS HDCSKIAKVA AIVGIGYLGV
RIGAAWCRRT PGITNSIITY GEEVVEQVKV DIDEDAEEES DIGEEIVVGT IGIGIHTNVN PEVRAKRRHR
SRPFIKKIVN LTKNHFGGCP DSSKSNVMAV SKFVYEQCKQ HNCLPHQTRL IMSIAVPLVL SPDMYDISSK
ALLNSEILTE NRATLDRLKT LDGWLTHLVC HPLSAKAWRR AIDNLCGLPD WKAFKLVNQG CLEELAGFCT
SVRRGTHPDM TEFPQDRPIK TRKLYCLGGV GTSVKFNVHN NSLANLRRGL VERVFFVEND KKELEPAPKP
LSGAFDRLTW FRRKLHSIVG THSSISPGQF LDFYTGRRRT IYEGAVKSLE GLSVQRRDAY LKTFVKAEKI
NTTKKPDPAP RVIQPRNVRY NVEVGRYLRR FEHYLYRGID EIWNGPTIIK GYTVEQIGKI ARDAWDSFVS
PVAIGFDMKR FDQHVSSDAL KWEHSVYLDA FCHDSYLAEL LKWQLVNKGV GYASDGMIKY KVDGCRMSGD
MNTAMGNCLI ACAITHDFFR SRGIRARLMN NGDDCVVICE KECAAVVKAD MVRHWRQFGF QCELECDAEI
FEQIEFCQMR PVYDGEKYVM VRNPLVSLSK DSYSVGPWNG INHARKWVNA VGLCGLSLTG GIPVVQSYYN
MMIRNTQSVN SSGILRDVSF ASGFRELARL GNRKSGAISE DARFSFYLAF GITPDLQRAM ESDYDAHTIE
WGFVPQGNPR IQPISWTLNE L
Publications
- Harrell L, Melcher U, Atkins JF. (2002) Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res. 30(9):2011-2017. [abstract]
- Riviere CJ, Pot J, Tremaine JH, Rochon DM. (1989) Coat protein of melon necrotic spot carmovirus is more similar to those of tombusviruses than those of carmoviruses. J Gen Virol. 70 ( Pt 11):3033-3042. [abstract]