Recode v. 2.0 / Database of translational recoding events.
Details for "r200273"
| Accession number | r200273 [export] |
| Locus name | polyprotein |
| Recode1 name | pol_r_vir_middleburg |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Middelburg virus [details] |
Sequence
| GenBank IDs | J02246.1,AF339486.1 |
| Sequence | ss-RNA of 3063 nucleotides [sequence] |
| Organisation | Sequence (1)
|
Recoding event
| Event type | Readthrough (position: 1,135) |
| Description | synthesis of polyprotein. |
GATGCCGACC TAGCAGCTGT GTATAGAGCC GTGGCGTCCT TGGCTGACGA GACAGTCCGC ACAATGGCCA
TACCACTCCT GTCAACGGGG ACGTTCGCTG GGGGAAAGGA CCGCGTGTTG CAGTCGTTGA ACCACCTATT
TACGGCCCTG GACACCACGG ACGTCGATGT GACGATATAC TGCCGGGATA AGTCGTGGGA AAAGAAAATC
CAAGAGGCCA TTGATATGAG GACGGCAACC GAACTGCTAG ATGACGACAC AACGGTTATG AAAGAGCTAA
CCAGGGTGCA TCCTGATAGC TGCCTAGTGG GGCGCAGTGG ATTCAGCACG GTGGACGGAC GGCTGCATTC
ATACCTTGAA GGAACTAGGT TCCACCAGAC TGCTGTCGAC GTGGCAGAAA GGCCAACTTT GTGGCCAAGG
AGAGAGGAAG CGAACGAGCA GATAACACAC TACGTCCTTG GCGAATCCAT GGAGGCCATA AGAACCAAAT
GCCCGGTGGA TGATACCGAC TCGTCAGCAC CACCATGCAC CGTCCCGTGC CTTTGCCGCT ACGCCATGAC
CCCCGAGCGC GTACATAGAT TGCGCGCCGC GCAGGTGAAG CAGTTCACAG TCTGCTCCTC GTTCCCGCTG
CCAAAGTACA AGATACCAGG CGTGCAGAGA GTGGCGTGTT CGGCTGTAAT GTTGTTTAAT CACGACGTTC
CAGCGCTGGT AAGCCCTCGC AAGTACAGGG AACCGAGCAT TAGCAGCGAG TCGTCATCAT CTGGACTGTC
TGTGTTCGAC CTGGACATAG GCTCTGATTC AGAGTACGAA CCAATGGAAC CCGTGCAGCC CGAACCGCTG
ATTGACTTGG CAGTCGTAGA GGAGACGGCC CCCGTCAGAC TGGAACGAGT GGCCCCTGTG GCTGCACCTC
GCAGAGCCCG CGCGACACCC TTTACTTTGG AGCAGCGGGT TGTAGCACCA GTTCCTGCGC CGCGTACGAT
GCCAGTCAGA CCCCCTCGCC GGAAGAAAGC GGCGACCAGA ACACCTGAAA GGATCTCGTT CGGCGATTTA
GATGCCGAGT GCATGGCCAT CATAAATGAC GACCTGACTT TCGGGGACTT CGGCGCGGGC GAGTTCGAAC
GTTTAACGTC AGCATGACTA GACCGGGCGG GGGCCTACAT ATTCTCATCG GATACAGGCC CAGGACACCT
ACAGCAAAGA TCGGTCAGAC AAACCAGACT AGCGGACTGC GTGGCGGAGG ACGTACATGA AGAGAGAGTA
TTCGCCCCGA AGTGTGACAA GGAGAAGGAA AGACTGCTGC TTTTACAAAT GCAGATGGCA CCCACAGAAG
CCAACAAAAG CCGCTACCAA TCCAGGAAAG TGGAGAACAT GAAGGCAGAG GTTATCGACA GACTGTTGGG
CGGAGCGAAA CTGTTCGTGA CACCCACAAC CGACTGCCGA TACGTGACAC ACAAGCACCC AAAGCCGATG
TACTCGACTA GTGTAGCATT CTACCTAAGT TCGGCTAAGA CTGCAGTGGC GGCATGCAAT GAATTCTTAA
GTAGGAACTA CCCAACTGTG ACATCCTATC AGATCACGGA TGAGTACGAC GCCTACCTGG ACATGGTGGA
CGGTTCCGAG AGCTGTCTAG ACAGAGCAGC CTTTTGTCCG TCCAAATTAC GCAGCTTTCC GAAGAAGCAC
AGCTACCATC GAGCCGAAAT AAGAAGTGCC GTTCCGTCTC CTTTCCAAAA TACACTGCAG AACGTGTTGG
CCGCTGCCAC GAAACGCAAC TGCAACGTGA CGCAGATGCG GGAGCTGCCG ACCTTGGATT CAGCGGTGTT
TAATGTCGAG TGCTTTAAGA AGTACGCATG CAATAACGAC TACTGGGACG AATTTGCTCA AAAGCCCATC
AGGTTGACGA CGGAAAACAT CACATCCTAC GTGACTAGAC TGAAGGGCCC GAAGGCAGCC GCTCTATTCG
CAAAAACCTA CGACTTGAAG CCGTTGCAAG AGGTACCGAT GGACCGCTTC GTCGTGGATA TGAAGAGAGA
CGTGAAGGTG ACACCCGGCA CCAAGCATAC AGAAGAAAGG CCAAAGGTGC AAGTCATACA GGCAGCCGAA
CCCCTAGCCA CCGCCTACCT GTGCGGTATA CATAGAGAAC TAGTTAGAAG GTTAAATGCA GTTCTGCTGC
CGAACGTCCA CACCCTGTTT GACATGTCGG CGGAAGACTT TGATGCCATA ATATCCGAGC ACTTCCGCCC
TGGGGACGCT GTACTAGAAA CAGACATCGC ATCGTTCGAC AAGAGCCAAG ACGACTCGCT GGCGTACACG
GGGCTGATGT TGCTAGAGGA CCTCGGCGTC GACCAGCCTT TGCTCGAGTT GATCGAAGCG TCGTTCGGGG
AAATAACAAG CACGCATTTA CCAACGGGAA CTAGGTTCAA GTTCGGGGCC ATGATGAAAT CTGGCATGTT
CCTGACGCTC TTCGTGAACA CGATGCTCAA CATGACTATA GCTAGCAGAG TGTTAGAAGA ACGGCTGACC
AATTCTAAAT GTGCCGCCTT TATCGGCGAT GATAACATTG TGCATGGAGT GAAATCTGAT AAACTGCTGG
CTGAGAGATG CGCCGCATGG ATGAACATGG AAGTGAAGAT CATCGATGCA GTCATGTGCG AGCGCCCCCC
TTACTTCTGC GGAGGGTTTA TCGTGTTTGA CCAAGTTACA GGCACCTGTT GCAGAGTGGC AGACCCGCTG
AAGAGACTCT TTAAGCTCGG AAAACCGCTG CCTGCTGAAG ACAAACAGGA CGAGGACCGC AGAAGGGCGT
TGGCCGACGA GGCACAACGG TGGAACCGCG TAGGTATCCA AGCAGATTTG GAGGCCGCAA TGAACAGCCG
TTACGAGGTC GAGGGGATCC GAAACGTCAT CACGGCGTTA ACCACGCTGT CACGGAATTA TCACAATTTC
CGACATCTAA GAGGACCCGT TATTGACCTC TACGGCGGTC CTAAATAGTT GCGTGAATAC ATATTCTAAC
AACAGATACT ATTGACGCAG CACCATGAAT TACATACCTA CGCAGACGTT CTA
Products
| Product | gag |
| Description | gag capsid polyprotein |
MAIPLLSTGT FAGGKDRVLQ SLNHLFTALD TTDVDVTIYC RDKSWEKKIQ EAIDMRTATE LLDDDTTVMK
ELTRVHPDSC LVGRSGFSTV DGRLHSYLEG TRFHQTAVDV AERPTLWPRR EEANEQITHY VLGESMEAIR
TKCPVDDTDS SAPPCTVPCL CRYAMTPERV HRLRAAQVKQ FTVCSSFPLP KYKIPGVQRV ACSAVMLFNH
DVPALVSPRK YREPSISSES SSSGLSVFDL DIGSDSEYEP MEPVQPEPLI DLAVVEETAP VRLERVAPVA
APRRARATPF TLEQRVVAPV PAPRTMPVRP PRRKKAATRT PERISFGDLD AECMAIINDD LTFGDFGAGE
FERLTSA
| Product | gag-pol |
| Description | gag capsid polyprotein, RNA-dependent RNA polymerase |
| Modifications | 1135..1137,aa:OTHER |
MAIPLLSTGT FAGGKDRVLQ SLNHLFTALD TTDVDVTIYC RDKSWEKKIQ EAIDMRTATE LLDDDTTVMK
ELTRVHPDSC LVGRSGFSTV DGRLHSYLEG TRFHQTAVDV AERPTLWPRR EEANEQITHY VLGESMEAIR
TKCPVDDTDS SAPPCTVPCL CRYAMTPERV HRLRAAQVKQ FTVCSSFPLP KYKIPGVQRV ACSAVMLFNH
DVPALVSPRK YREPSISSES SSSGLSVFDL DIGSDSEYEP MEPVQPEPLI DLAVVEETAP VRLERVAPVA
APRRARATPF TLEQRVVAPV PAPRTMPVRP PRRKKAATRT PERISFGDLD AECMAIINDD LTFGDFGAGE
FERLTSAQLD RAGAYIFSSD TGPGHLQQRS VRQTRLADCV AEDVHEERVF APKCDKEKER LLLLQMQMAP
TEANKSRYQS RKVENMKAEV IDRLLGGAKL FVTPTTDCRY VTHKHPKPMY STSVAFYLSS AKTAVAACNE
FLSRNYPTVT SYQITDEYDA YLDMVDGSES CLDRAAFCPS KLRSFPKKHS YHRAEIRSAV PSPFQNTLQN
VLAAATKRNC NVTQMRELPT LDSAVFNVEC FKKYACNNDY WDEFAQKPIR LTTENITSYV TRLKGPKAAA
LFAKTYDLKP LQEVPMDRFV VDMKRDVKVT PGTKHTEERP KVQVIQAAEP LATAYLCGIH RELVRRLNAV
LLPNVHTLFD MSAEDFDAII SEHFRPGDAV LETDIASFDK SQDDSLAYTG LMLLEDLGVD QPLLELIEAS
FGEITSTHLP TGTRFKFGAM MKSGMFLTLF VNTMLNMTIA SRVLEERLTN SKCAAFIGDD NIVHGVKSDK
LLAERCAAWM NMEVKIIDAV MCERPPYFCG GFIVFDQVTG TCCRVADPLK RLFKLGKPLP AEDKQDEDRR
RALADEAQRW NRVGIQADLE AAMNSRYEVE GIRNVITALT TLSRNYHNFR HLRGPVIDLY GGPK
Publications
- Harrell L, Melcher U, Atkins JF. (2002) Predominance of six different hexanucleotide recoding signals 3' of read-through stop codons. Nucleic Acids Res. 30(9):2011-2017. [abstract]
- Beier H, Grimm M. (2001) Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs. Nucleic Acids Res. 29(23):4767-4782. [abstract]
- Ou JH, Rice CM, Dalgarno L, Strauss EG, Strauss JH. (1982) Sequence studies of several alphavirus genomic RNAs in the region containing the start of the subgenomic RNA. Proc Natl Acad Sci U S A. 79(17):5235-5239. [abstract]