Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200277"

Accession numberr200277 [export]
Locus namereplicase
Recode1 namepol_r_vir_oilseed
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismYoucai mosaic virus [details]

Sequence

VariantChinese Rape Mosaic Virus
GenBank IDsU30944.1
SequencemRNA of 6303 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,378)
Descriptionproduction of fusion protein and set the ratio between two protein products.
GTTTTATTTT TGTTGCAACA ACAACAACAA ATTACAATAA CAACAAAACA AATACAAACA ACAACAACAT GGCACAATTT CAACAAACAG TAAACATGCA AACATTGCAG GCTGCCGCGG GGCGCAACAG CCTGGTGAAT GATTTAGCAT CTCGACGCGT TTATGATAAT GCTGTCGAGG AGCTAAATGC ACGCTCGAGA CGCCCTAAGG TCCATTTCTC CAAATCAGTG TCTACGGAAC AGACGCTGTT GGCTTCAAAC GCTTATCCGG AGTTTGAGAT TTCCTTTACT CATACCCAAC AGGCCGTACA CTCCCTAGCG GGTGGTCTAA GGACTCTTGA GTTGGAGTAT CTCATGATGC AAGTTCCGTT CGGTTCTCTA ACGTACGATA TCGGTGGTAA CTTCGCTGCG CACCTTTTCA AGGGACGCGA TTACGTTCAC TGCTGCATGC CAAATTTGGA TGTCCGTGAT ATAGCTCGTC ATGAGGGGCA CAAGGAGGCA ATCTTTAGTT ACCTTTCTCG CCTAGACAGG CAAAGGCGTC CTGTCCCCGA ATATCAGAGA GCGGCATTCC ATAATTACGC GGAGAATCCT CATTTCGTTC ATTGCGACCG ACCATTTCAG CAGTGTGAGC TAAGCACCGT TAACCGGTGG GACACTTACG CTATTGCACT TCATAGTATT TATGATATTC CTGCTGATGA GTTCGGTGCG GCGCTACTCA GGAAGAATGT AAAAATTTGT TACGCGGCTT TCCATTTTCA CGAGAACATG CTCCTGGACT GTGACTCTGT CACCTTGGAG GATATTGGAG CCACATTTCA ACGTGCCGGT GACAAGTTGA ATTTCTTCTT CCACAACGAG AGCACACTCA ATTACACCCA TAGTTTTAGT AATATAATTA AGTACGTGTG TAAGACCTTC TTCCCTGCGA GTCAGCGGTA TGTGTATCAT AAGGAGTTTT TAGTTACTAG AGTTAATACG TGGTATTGTA AGTTTACTAG AGTCGATACT TTTACTCTTT TCCGTGGTGT GTACAAGACA AGTGTGGATA GTGAGGAGTT CTATAAGGCT ATGGACGACG CGTGGGAGTA CAAGAAGACC TTGGCTATGC TCAATTCCGA GAGGACCATC TTCAAAGATA GTGCTGCCAT AAATTTCTGG TTTCCAAAGG TTAGAGATAT GGTCATCATA CCTCTCTTCG ACGCATCAAT CACAACTGGA AGGATGTCAA GAAGGGAAGT GTTGGTGAAC AAGGATTTTG TTTACACGGT CCTTAACCAC ATCAAAACCT ATCAAGCAAA GGCCTTAACA TATGCTAATG TGTTATCTTT CGTTGAGTCT ATTAGGTCTA GAGTTATAAT TAACGGTGTC ACTGCCAGGT CGGAATGGGA TACCGACAAG GCAATCTTAG GTCCGTTAGC GATGACATTT TTCCTTGTCA CAAAGTTGAG TCATGTTCAG GACGAGATCG TCCTTAAGAA GTTCCAAAAG TTTGACGCTA CTGCCAAAGA ACTGATTTGG TCAAGTCTCT GCGATGCCCT GAAGGGGGTT ATACCCTCGG TCAAAGAGAC TCTTGCGCGC GGTGGTTTCG TCAAGCTTGC TGAAGAGAGT TTAGAGATCA AAATTCCAGA GTTATACTGC ACTTTTACCG ACAGGTTAGT GCTCGAGTAT AAGAGGACGG AGGAGTTCCA GTCGTGCGAT CTGTCCAAAC CTTTGGAAGA GTCTGAGAAG TACTATAATG CGTTATCCGA GCTGTCTGTG CTCGAAAATC TTGGCTCGTT TGATCTGGAT GCCTTTAAGG AGTTGTGTCA GAAGAAGAAC GTCGACCCTG ATGTCGCTGC GAAGGTGGTG GTGGCGATTA TGAATAGTGA ATTGACGTTA CCGTTCAAGA AACCTACAGA AGAGGAAGTT GCTGAGGCGC TTAGCGGAGA AGTGGTGCAA GATGAAGGAT TGAGGTTGAG TAACAAAGCA CCCTTCCCAT GTGTGAGTAA CCTCAAGGAA GGTTTAGTTC CGGCGTGTGG ATTGTGTCCG AATGGTGCGA ACTTCGACAG AGTGGATATG GACATATCTG AGTTCCATCT CAAGAGTGTA GATGCAGTTA AAAAAGGGGC TATGATGTCA GCGGTGTACA CGGGAAAGAT CAAGGTTCAA CAGATGAAGA ACTACGTCGA TTACCTAAGT GCCTCATTGT CAGCTACAGT CTCAAACCTC TGTAAAGTGC TTAGAGATGT TCACGGAGTT GACCCTGAAT CTCAAGAGAA GTCGGGTGTG TGGGATGTGA GAAGAGGACG CTGGTTACTA AAACCTAACG CGAAGTGTCA CGCTTGGGGT GTTGCGGAAG ATGCTAACCA CAAGTTAGTT ATCGTGTTAC TTAACTGGGA TGAAGGGAAA CCTGTTTGTG ATGAGACATG GTTTAGACTG GCGGTTTCTA GTGACTCTTT GGTGTACTCG GACATGGGTA AACTTAAGAC GTTAACGTCA TGTTGCAGAG ATGGTGAGCC TCCAGAACCT ACGGCCAAAT TGGTGCTCGT TGATGGTGTT CCAGGCTGTG GAAAAACAAA GGAAATCTTG GAGAAGGTAA ACTTTTCCGA AGACTTGGTG TTGGTACCTG GAAAAGAAGC GTCAAAAATG ATTATTCGAA GAGCAAACCA GGCAGGAATT ACAAGAGCTG ACAAGGACAA TGTGAGGACG GTAGATTCCT TCTTGATGCA CCCTCCAAAA AGGGTGTTCA AAAGGTTGTT TATCGATGAG GGATTAATGC TGCACACAGG CTGTGTTAAC TTTTTGATGT TGCTATCTCA TTGTGATGTG GCATACGTTT ACGTTGATAC ACAGCAAATT CCCTTCATTT GTAGGGTTGC GAATTTCCCT TATCCTGCGC ATTTCGCGAA ACTTGTTGTG GACGAGAAGG AAGATAGAAG GGTCACGCTC AGGTGTCCGG CAGACGTTAC ATACTTCTTG AATCAGAAGT ACGACGGGTC AGTACTGTGT ACGAGTTCTG TGGAAAGGTC GGTTAGTGCA GAGGTTGTGA GAGGGAAAGG TGCTTTAAAC CCAATAACTT TACCGTTAGA GGGGAAAATT CTCACCTTTA CACAAGCCGA TAAATTCGAA TTGTTGGATA AGGGTTACAA AGATGTGAAT ACGGTTCATG AAGTTCAGGG CGAAACGTAC GAGAAGACAG CTATCGTTCG GTTGACAGCA ACTCCCTTGG AGATCATATC AAGAGCGTCA CCTCATGTTC TGGTGGCGCT GACAAGGCAC ACTACACGAT GTAAATATTA CACTGTTGTG CTAGACCCGA TGGTGAATGT GATTTCTGAA CTGGGGAAAC TGTCCAACTT CCTTCTTGAG ATGTATAAGG TAGAGTCGGG TACCCAATAG CAATTACAGA TCGACACAGT GTTCAAAGGG ACAAACTTGT TCGTCCCGAC GCCAAAGTCA GGAGATTGGC GAGACATGCA GTTCTATTAT GACACTCTTC TTCCCGGAAA CAGTACTATT CTCAATGAAT TCGATGCTGT GACGATGAAT TTGAGGGATA TTTCCTTAAA TGTTAAGGAC TGTAGGATCG ACTTCTCGAA ATCTGTGCAA GTGCCGAAAG AACGGCCGGT TTTCATGAAA CCTAAATTGA GGACGGCGGC AGAAATGCCA CGAACTGCTG GTCTACTTGA GAACCTTGTC GCGATGATTA AAAGAAACAT GAATGCACCA GATTTGACAG GTACGATTGA TATAGAGGAC ACTGCGTCGT TAGTAGTTGA AAAGTTTTGG GATGCCTATG TGGTGAAGGA ATTCAGCGGA ACAGACGGAA TGGCTATGAC GAGGGAAAGT TTTTCTAGAT GGCTCTCCAA ACAAGAGTCG TCTACAGTTG GTCAGTTAGC GGATTTCAAC TTTGTGGATT TGCCGGCAGT GGATGAGTAT AAGCATATGA TCAAAAGCCA ACCCAAGCAA AAGTTAGACT TGAGCATTCA AGATGAATAC CCTGCGTTGC AGACTATAGT CTATCATTCG AAGAAGATCA ATGCGATTTT TGGTCCTATG TTTTCAGAGT TAACGAGGAT GCTCCTTGAA ACAATAGATA CTTCCAAGTT TCTGTTTTAC ACCAGGAAGA CACCTACGCA GATTGAAGAG TTTTTCTCTG ATCTAGATTC GTCACAAGCG ATGGAGATTC TGGAGCTCGA CATTTCAAAG TATGACAAGT CACAAAACGA GTTCCATTGC GCTGTTGAGT ACAAGATATG GGAAAAGCTT GGAATTGACG ATTGGTTAGC GGAGGTGTGG AGACAAGGAC ACAGAAAAAC GACGCTCAAA GATTACACGG CTGGTATAAA GACATGTTTG TGGTACCAAA GGAAAAGCGG TGACGTGACT ACCTTCATTG GGAACACAAT TATCATAGCG GCGTGTTTGA GTTCTATGAT CCCGATGGAT AAAGTGATCA AGGCGGCTTT CTGCGGTGAC GACAGTTTGA TATATATTCC GAAGGGTCTA GACCTACCGG ATATTCAAGC TGGAGCCAAC CTTACGTGGA ACTTTGAGGC CAAATTGTTC AGAAAGAAGT ACGGGTATTT TTGTGGTCGT TACGTTATTC ACCACGATAG AGGAGCTATT GTATATTATG ATCCACTTAA GTTGATATCT AAATTAGGTT GTAAACATAT TAGAGATGAA GTTCACTTAG AAGAGTTGCG TAGATCTTTG TGTGATGTAA CTAGTAATTT AAATAATTGT GCGTATTTTT CACAGTTAGA TGAGGCCGTT GCCGAGGTCC ATAAGACCGC GGTTGGCGGA GCGTTTGTTT ACTGTAGTAT AATTAAATAT TTGTCAGATA AAAGGTTGTT TAAAGATTTG TTTTTTGTTT GACTGAGTCG ATAATGTCTT ACGAGCCTAA AGTAAGTGAC TTCCTTGCTC TTACGAAAAA GGAGGAAATT TTACCCAAGG CTTTAACGAG GTTAAAGACT GTCTCTATTA GTACTAAGGA TGTTATATCT GTTAAGGAGT CTGAGTCCCT GTGTGATATT GATTTGTTAG TGAATGTGCC ATTAGATAAG TATAGGTATG TGGGTGTTTT GGGTGTTGTT TTCACCGGTG AATGGCTAGT ACCGGATTTC GTTAAAGGTG GGGTAACAGT GAGCGTGATT GACAAACGGC TTGAAAACTC CAAGGAGTGC ATAATTGGTA CGTACAGAGC TGCTGCGAAG GACAGAAGGT TCCAGTTCAA GCTGGTTCCA AATTACTTCG TATCCGTCGC GGATGCCAAG CGAAAGCCGT GGCAGGTTCA TGTGCGAATT CAAAATCTGA AGATTGAAGC TGGATGGCAA CCTCTGGCTC TGGAGGTGGT TTCTGTTGCC ATGGTTACTA ATAACGTGGT TGTTAAAGGT TTGAGGGAAA AAGTCATCGC TGTGAATGAT CCGAACGTCG AAGGTTTCGA AGGTGTGGTT GACGATTTCG TCGATTCGGT TGCTGCATTC AAGGCGATTG ACAGTTTCAG GAAGAAAAAG AAAAGGATTG GAGGAAGGGA TGTAAATAGT AATAAGTATA GATATAGACC GGAGAGATAC GCCGGTCCTG ATTCGTTACA ATATAAAGAA GAAAATGGTT TACAACATCA CGAGCTCGAA TCAGTACCAG TATTTCGCAG CGATGTGGGC AGAGCCCACA GCGATGCTTA ACCAGTGCGT GTCTGCGTTG TCGCAGTCGT ACCAAACTCA AGCGGCAAGA GATACTGTTA GACAGCAGTT CTCTAACCTT CTGAGTGCGA TTGTGACACC GAACCAGCGG TTTCCAGAAG CAGGATACCG GGTGTATATT AATTCAGCAG TTCTAAAACC GTTGTACGAG TCTCTCATGA AGTCCTTTGA TACTAGGAAT AGGATCATTG AAACTGAAGA AGAGTCGCGT CCATCGGCTT CCGAAGTAGC TAATGCAACA CAACGTGTTG ATGATGCGAC CGTGGCCATC AGGAGTCAAA TTCAGCTTTT GCTGAACGAG CTCTCCAACG GACATGGTCT GATGAACAGG GCAGAGTTCG AGGTTTTATT ACCTTGGGCT ACTGCGCCAG CTACATAGGC GTGGTGCACA CGATAGTGCA CAGTGTTTTT CTCTCCACTT AAATCGAAGA GATATACTTA CGGTGTAATT CCGTAAGGGT GGCGTAAACC AAATTACGCA ATGTTTTAGG TTCCATTTAA ATCGAAACCT GTTATTTCCT GGATCACCTG TTAACGTACG CGTGGCGTAT ATTACAGTGG GAATAACTAA AAGTGAGAGG TTCGAATCCT CCCTAACCCC GGGTAGGGGC CCA

Products

Productgag
MAQFQQTVNM QTLQAAAGRN SLVNDLASRR VYDNAVEELN ARSRRPKVHF SKSVSTEQTL LASNAYPEFE ISFTHTQQAV HSLAGGLRTL ELEYLMMQVP FGSLTYDIGG NFAAHLFKGR DYVHCCMPNL DVRDIARHEG HKEAIFSYLS RLDRQRRPVP EYQRAAFHNY AENPHFVHCD RPFQQCELST VNRWDTYAIA LHSIYDIPAD EFGAALLRKN VKICYAAFHF HENMLLDCDS VTLEDIGATF QRAGDKLNFF FHNESTLNYT HSFSNIIKYV CKTFFPASQR YVYHKEFLVT RVNTWYCKFT RVDTFTLFRG VYKTSVDSEE FYKAMDDAWE YKKTLAMLNS ERTIFKDSAA INFWFPKVRD MVIIPLFDAS ITTGRMSRRE VLVNKDFVYT VLNHIKTYQA KALTYANVLS FVESIRSRVI INGVTARSEW DTDKAILGPL AMTFFLVTKL SHVQDEIVLK KFQKFDATAK ELIWSSLCDA LKGVIPSVKE TLARGGFVKL AEESLEIKIP ELYCTFTDRL VLEYKRTEEF QSCDLSKPLE ESEKYYNALS ELSVLENLGS FDLDAFKELC QKKNVDPDVA AKVVVAIMNS ELTLPFKKPT EEEVAEALSG EVVQDEGLRL SNKAPFPCVS NLKEGLVPAC GLCPNGANFD RVDMDISEFH LKSVDAVKKG AMMSAVYTGK IKVQQMKNYV DYLSASLSAT VSNLCKVLRD VHGVDPESQE KSGVWDVRRG RWLLKPNAKC HAWGVAEDAN HKLVIVLLNW DEGKPVCDET WFRLAVSSDS LVYSDMGKLK TLTSCCRDGE PPEPTAKLVL VDGVPGCGKT KEILEKVNFS EDLVLVPGKE ASKMIIRRAN QAGITRADKD NVRTVDSFLM HPPKRVFKRL FIDEGLMLHT GCVNFLMLLS HCDVAYVYVD TQQIPFICRV ANFPYPAHFA KLVVDEKEDR RVTLRCPADV TYFLNQKYDG SVLCTSSVER SVSAEVVRGK GALNPITLPL EGKILTFTQA DKFELLDKGY KDVNTVHEVQ GETYEKTAIV RLTATPLEII SRASPHVLVA LTRHTTRCKY YTVVLDPMVN VISELGKLSN FLLEMYKVES GTQ
Productgag-pol
DescriptionRNA-dependent RNA polymerase
Modifications3378..3380,aa:OTHER
MAQFQQTVNM QTLQAAAGRN SLVNDLASRR VYDNAVEELN ARSRRPKVHF SKSVSTEQTL LASNAYPEFE ISFTHTQQAV HSLAGGLRTL ELEYLMMQVP FGSLTYDIGG NFAAHLFKGR DYVHCCMPNL DVRDIARHEG HKEAIFSYLS RLDRQRRPVP EYQRAAFHNY AENPHFVHCD RPFQQCELST VNRWDTYAIA LHSIYDIPAD EFGAALLRKN VKICYAAFHF HENMLLDCDS VTLEDIGATF QRAGDKLNFF FHNESTLNYT HSFSNIIKYV CKTFFPASQR YVYHKEFLVT RVNTWYCKFT RVDTFTLFRG VYKTSVDSEE FYKAMDDAWE YKKTLAMLNS ERTIFKDSAA INFWFPKVRD MVIIPLFDAS ITTGRMSRRE VLVNKDFVYT VLNHIKTYQA KALTYANVLS FVESIRSRVI INGVTARSEW DTDKAILGPL AMTFFLVTKL SHVQDEIVLK KFQKFDATAK ELIWSSLCDA LKGVIPSVKE TLARGGFVKL AEESLEIKIP ELYCTFTDRL VLEYKRTEEF QSCDLSKPLE ESEKYYNALS ELSVLENLGS FDLDAFKELC QKKNVDPDVA AKVVVAIMNS ELTLPFKKPT EEEVAEALSG EVVQDEGLRL SNKAPFPCVS NLKEGLVPAC GLCPNGANFD RVDMDISEFH LKSVDAVKKG AMMSAVYTGK IKVQQMKNYV DYLSASLSAT VSNLCKVLRD VHGVDPESQE KSGVWDVRRG RWLLKPNAKC HAWGVAEDAN HKLVIVLLNW DEGKPVCDET WFRLAVSSDS LVYSDMGKLK TLTSCCRDGE PPEPTAKLVL VDGVPGCGKT KEILEKVNFS EDLVLVPGKE ASKMIIRRAN QAGITRADKD NVRTVDSFLM HPPKRVFKRL FIDEGLMLHT GCVNFLMLLS HCDVAYVYVD TQQIPFICRV ANFPYPAHFA KLVVDEKEDR RVTLRCPADV TYFLNQKYDG SVLCTSSVER SVSAEVVRGK GALNPITLPL EGKILTFTQA DKFELLDKGY KDVNTVHEVQ GETYEKTAIV RLTATPLEII SRASPHVLVA LTRHTTRCKY YTVVLDPMVN VISELGKLSN FLLEMYKVES GTQQQLQIDT VFKGTNLFVP TPKSGDWRDM QFYYDTLLPG NSTILNEFDA VTMNLRDISL NVKDCRIDFS KSVQVPKERP VFMKPKLRTA AEMPRTAGLL ENLVAMIKRN MNAPDLTGTI DIEDTASLVV EKFWDAYVVK EFSGTDGMAM TRESFSRWLS KQESSTVGQL ADFNFVDLPA VDEYKHMIKS QPKQKLDLSI QDEYPALQTI VYHSKKINAI FGPMFSELTR MLLETIDTSK FLFYTRKTPT QIEEFFSDLD SSQAMEILEL DISKYDKSQN EFHCAVEYKI WEKLGIDDWL AEVWRQGHRK TTLKDYTAGI KTCLWYQRKS GDVTTFIGNT IIIAACLSSM IPMDKVIKAA FCGDDSLIYI PKGLDLPDIQ AGANLTWNFE AKLFRKKYGY FCGRYVIHHD RGAIVYYDPL KLISKLGCKH IRDEVHLEEL RRSLCDVTSN LNNCAYFSQL DEAVAEVHKT AVGGAFVYCS IIKYLSDKRL FKDLFFV

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