Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200283"

Accession numberr200283 [export]
Locus namepol
Recode1 namepol_r_vir_pepper
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismPepper mild mottle virus [details]
AcronymPMMV

Sequence

VariantPepper mild mottle virus (strain Spain)
GenBank IDsM81413.1
Sequencess-RNA of 6357 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,421)
Descriptionproduction of fusion protein and set the ratio between two protein products
GTAAATTTTT CACAATTTAA CAACAACAAC ACAAACAACA AACAACATTA CAAACAAAAT ACAACTACAA TGGCTTACAC ACAACAAGCT ACCAACGCCG CATTAGCAAG TACTCTCCGA GGGAATAACC CCTTGGTGAA CGATCTTGCT AATCGGAGAC TGTACGAATC AGCGGTCGAA CAATGCAATG CACATGACCG CAGGCCCAAG GTTAATTTTT TAAGGTCGAT AAGCGAAGAG CAGACGCTTA TCGCAACTAA GGCCTACCCT GAGTTCCAAA TCACGTTCTA CAACACGCAG AACGCTGTGC ACAGTCTCGC AGGTGGACTT CGGTCTTTGG AACTAGAATA CTTGATGATG CAGATCCCCT ACGGTTCAAC GACATATGAT ATCGGGGGAA ATTTTGCTGC TCACATGTTT AAAGGTCGTG ACTACGTTCA TTGCTGCATG CCTAACATGG ACTTACGTGA CGTCATGCGT CACAATGCTC AAAAGGATAG CATTGAACTG TACCTTTCAA AGCTTGCGCA AAAGAAAAAG GTAATACCGC CATATCAAAA GCCATGCTTT GATAAATACA CGGACGATCC GCAATCAGTA GTGTGCTCGA AACCTTTTCA GCACTGCGAA GGCGTTTCGC ACTGCACGGA TAAAGTATAC GCTGTCGCTT TGCACAGTTT ATACGACATT CCAGCAGATG AATTTGGGGC AGCACTTCTG AGGAGAAATG TTCATGTCTG CTATGCTGCC TTCCACTTTT CTGAGAATCT TCTTTTAGAA GATTCGTATG TCAGTCTTGA CGACATAGGC GCTTTCTTCT CGAGAGAGGG CGATATGTTG AACTTTTCTT TTGTAGCAGA GAGTACTTTA AATTATACTC ATTCCTATAG TAATGTGCTT AAGTATGTGT GTAAGACTTA CTTCCCCGCT TCTAGTAGAG AAGTGTACAT GAAGGAGTTT TTGGTAACTA GGGTAAATAC TTGGTTTTGT AAGTTTTCAA GGTTAGATAC CTTTGTACTA TATAGAGGTG TATACCACAG AGGTGTAGAC AAGGAGCAAT TTTACAGTGC AATGGAAGAT GCTTGGCATT ACAAAAAGAC TTTGGCGATG ATGAATAGCG AAAGAATCCT CTTAGAGGAT TCATCGTCTG TTAATTATTG GTTTCCAAAG ATGAAAGATA TGGTGATAGT ACCTTTGTTC GACGTATCTT TACAGAACGA GGGGAAAAGG TTAGCAAGAA AGGAGGTCAT GGTCAGCAAG GACTTCGTTT ATACTGTGCT TAATCATATT CGCACATACC AGTCGAAAGC GCTTACTTAC GCCAATGTAT TATCGTTCGT TGAGTCGATA AGATCAAGAG TGATAATCAA TGGGGTGACT GCGCGCTCAG AGTGGGATGT GGATAAGGCT TTGTTGCAGT CCCTGTCAAT GACTTTTTTC TTGCAGACCA AATTGGCCAT GCTCAAGGAT GACCTCGTGG TTCAGAAATT CCAAGTGCAT TCCAAATCGC TCACTGAATA TGTCTGGGAT GAGATTACTG CTGCTTTTCA CAATTGTTTT CCTACAATCA AGGAGAGGTT GATTAACAAG AAACTCATAA CTGTTTCGGA AAAGGCTCTT GAAATTAAAG TACCTGATTT GTATGTAACT TTCCACGATA GATTGGTTAA GGAGTACAAG TCTTCGGTGG AAATGCCGGT ACTGGACGTT AAAAAGAGCT TGGAAGAAGC AGAAGTGATG TACAATGCTT TGTCAGAAAT CTCAATTCTT AAAGACAGTG ACAAGTTTGA TGTTGATGTT TTTTCCCGGA TGTGTAATAC ATTAGGCGTA GATCCATTGG TGGCAGCAAA GGTAATGGTA GCTGTGGTTT CAAATGAGAG TGGTTTGACC TTAACGTTTG AGAGGCCTAC CGAAGCAAAT GTCGCACTTG CATTGCAACC GACAATTACA TCAAAGGAGG AAGGTTCGTT GAAGATTGTG TCGTCAGACG TAGGTGAGTC CTCAATCAAG GAAGTGGTTC GAAAATCAGA GATTTCTATG CTTGGTCTAA CAGGCAACAC AGTGTCCGAT GAGTTCCAAA GAAGTACAGA AATCGAGTCG TTGCAGCAGT TCCATATGGT ATCCACAGAG ACGATTATCC GTAAACAGAT GCATGCGATG GTGTATACTG GTCCGCTAAA AGTTCAACAA TGCAAGAACT ATTTAGACAG CCTGGTAGCC TCGCTCTCTG CTGCGGTATC AAACCTGAAG AAGATAATCA AAGACACAGC TGCTATAGAT CTCGAGACTA AGGAAAAATT TGGAGTCTAC GACGTGTGCC TTAAGAAATG GTTGGTGAAA CCTCTATCAA AAGGACATGC TTGGGGTGTG GTGATGGACT CAGACTATAA GTGCTTTGTT GCGCTTCTCA CATACGATGG CGAGAACATT GTGTGCGGAG AGACATGGCG TAGAGTCGCA GTGAGCTCCG AATCTTTGGT GTATTCAGAT ATGGGGAAGA TAAGAGCTAT ACGCTCTGTG CTTAAAGACG GTGAACCCCA TATAAGCAGT GCAAAGGTTA CACTTGTTGA TGGTGTTCCT GGTTGCGGAA AGACAAAGGA GATTCTTTCG AGGGTCAACT TTGACGAAGA TCTAGTTCTG GTACCAGGAA AACAGGCTGC TGAAATGATA AGAAGAAGGG CAAACAGTTC TGGTTTAATC GTGGCGACCA AGGAGAATGT AAGGACGGTA GACTCTTTCT TAATGAATTA CGGTCGAGGT CCGTGCCAAT ACAAAAGGCT GTTTCTGGAT GAAGGTCTAA TGTTACACCC TGGTTGTGTT AATTTTCTGG TTGGCATGTC TCTATGCTCC GAGGCTTTTG TTTATGGAGA CACCCAGCAG ATTCCTTACA TCAACAGAGT TGCAACTTTT CCCTATCCTA AGCATTTGAG TCAACTCGAG GTCGATGCTG TTGAAACTCG CAGAACAACG TTGCGGTGTC CAGCTGATAT CACCTTCTTC TTGAATCAGA AGTACGAAGG GCAAGTTATG TGCACATCAA GTGTTACACG CTCGGTGTCA CACGAGGTCA TCCAAGGTGC AGCGGTAATG AATCCAGTGT CTAAACCACT TAAAGGGAAG GTGATTACAT TCACTCAGTC AGACAAGTCA TTGCTGCTCT CGAGGGGTTA CGAAGATGTG CATACCGTTC ATGAGGTGCA AGGGGAAACG TTTGAAGACG TCTCACTAGT GAGGCTGACG CCAACACCCG TGGGAATAAT TTCAAAGCAG AGTCCGCACC TGTTGGTCTC ATTGTCTAGG CATACAAGGT CGATCAAATA TTACACAGTT GTGCTAGATG CAGTCGTTTC AGTGCTTAGA GATCTGGAGT GTGTGAGTAG TTACCTGTTA GATATGTACA AAGTTGATGT GTCGACTCAA TAGCAATTAC AGATAGAATC GGTGTACAAA GGTGTTAACC TTTTCGTCGC AGCACCAAAA ACAGGAGATG TTTCTGACAT GCAATATTAT TACGACAAGT GTTTGCCGGG AAACAGTACT ATACTCAATG AGTATGATGC TGTAACTATG CAAATACGAG AGAATAGTTT GAATGTCAAG GATTGTGTGT TGGATATGTC GAAATCGGTG CCTCTTCCGA GAGAATCTGA GACGACATTG AAACCTGTGA TCAGGACTGC TGCTGAAAAA CCTCGAAAAC CTGGATTGTT GGAAAATTTG GTCGCGATGA TCAAAAGAAA TTTCAACTCT CCCGAATTAG TAGGGGTTGT TGACATCGAA GACACCGCTT CTCTAGTAGT AGATAAGTTT TTTGATGCAT ACTTAATTAA AGAAAAGAAA AAACCAAAAA ATATACCTCT GCTTTCAAGG GCGAGTTTGG AAAGATGGAT CGAAAAGCAA GAGAAGTCAA CAATTGGCCA GTTGGCTGAT TTTGACTTTA TTGATTTACC AGCCGTTGAT CAATACAGGC ACATGATCAA GCAGCAGCCG AAACAGCGTT TGGATCTTAG TATTCAAACT GAATACCCGG CTTTGCAAAC TATTGTGTAT CATAGCAAGA AAATCAATGC GCTTTTTGGT CCTGTATTTT CAGAATTAAC AAGACAGCTG CTAGAGACAA TTGACAGTTC AAGATTCATG TTTTATACAA GGAAAACGCC TACACAGATC GAAGAATTTT TCTCAGATCT GGACTCTAAT GTTCCTATGG ACATATTAGA GCTAGACATT TCCAAGTATG ACAAATCACA GAACGAATTT CATTGTGCAG TCGAGTATGA GATTTGGAAA AGGTTAGGCT TAGACGATTT CTTGGCTGAA GTTTGGAAAC ACGGGCATCG GAAGACAACG TTGAAAGACT ACACAGCCGG AATAAAAACG TGTTTGTGGT ACCAGAGGAA AAGCGGTGAT GTCACCACAT TCATTGGAAA CACGATCATT ATTGCTGCAT GTCTGTCCTC TATGCTACCG ATGGAGAGAT TGATTAAAGG TGCCTTTTGT GGTGATGATA GTATATTATA CTTTCCAAAG GGCACTGATT TCCCCGATAT TCAACAGGGC GCAAACCTTC TCTGGAATTT TGAAGCCAAG TTGTTTAGGA AGAGATATGG TTACTTTTGC GGTAGGTACA TAATTCACCA TGACAGAGGC TGTATTGTAT ATTATGACCC TCTAAAATTG ATCTCGAAAC TCGGTGCAAA ACACATCAAG AATAGAGAAC ATTTAGAGGA ATTTAGGACC TCTCTTTGTG ATGTTGCTGG GTCGTTGAAC AATTGTGCGT ACTATACACA TTTGAACGAC GCTGTCGGTG AGGTTATTAA GACCGCACCT CTTGGTTCGT TTGTTTATAG AGCATTAGTT AAGTACTTGT GTGATAAAAG GTTATTTCAA ACATTGTTTT TGGAGTAAAT GGCGTTAGTA GTCAAGGACG ACGTTAAGAT TTCTGAGTTC ATCAATTTGT CTGCCGCTGA GAAATTCTTA CCTGCTGTTA TGACTTCGGT CAAGACGGTA CGAATTTCGA AAGTTGACAA AGTGATTGCA ATGGAAAACG ATTCGTTATC CGATGTGAAT TTGCTTAAAG GTGTAAAGCT TGTTAAGGAT GGTTATGTGT GTTTAGCAGG GTTAGTTGTG TCCGGGGAGT GGAACCTACC CGACAACTGC AGAGGTGGAG TAAGCGTTTG TTTGGTTGAT AAGAGAATGC AAAGAGATGA CGAAGCAACA CTTGGATCTT ATAGAACCAG TGCAGCTAAG AAACGATTTG CCTTCAAATT GATCCCGAAT TATAGCATTA CTACCGCCGA TGCTGAGAGA AAAGTTTGGC AAGTTTTAGT TAATATTAGA GGTGTTGCCA TGGAAAAGGG TTTCTGTCCT TTATCTTTGG AGTTTGTCTC AGTTTGTATT GTACACAAAT CCAATATAAA ATTAGGCTTG AGAGAGAAAA TTACTAGTGT GTCAGAAGGA GGACCCGTTG AACTTACAGA AGCAGTCGTT GATGAGTTCA TCGAATCAGT TCCAATGGCT GACAGATTAC GTAAATTTCG CAATCAATCT AAGAAAGGAA GTAATAAGTA TGTAGGTAAG AGAAATGATA ATAAGGGTTT GAATAAGGAA GGGAAGCTGT TTGATAAGGT TAGAATTGGG CAGAACTCGG AGTCATCGGA CGCCGAGTCT TCTTCGTTTT AACTATGGCT TACACAGTTT CCAGTGCCAA TCAATTAGTG TATTTAGGTT CTGTATGGGC TGATCCATTA GAGTTACAAA ATCTGTGTAC TTCGGCGTTA GGCAATCAGT TTCAAACACA ACAGGCTAGA ACTACGGTTC AACAGCAGTT CTCTGATGTG TGGAAGACTA TTCCGACCGC TACAGTTAGA TTTCCTGCTA CTGGTTTCAA AGTTTTCCGA TATAATGCCG TGCTAGATTC TCTAGTGTCG GCACTTCTCG GAGCCTTTGA TACTAGGAAC AGGATAATAG AAGTTGAAAA TCCGCAAAAT CCTACAACTG CCGAGACGCT TGATGCGACG AGGCGGGTAG ACGATGCGAC GGTGGCCATT AGGGCCAGTA TAAGTAACCT CATGAATGAG TTAGTTCGTG GCACGGGAAT GTACAATCAA GCTCTGTTCG AGAGCGCGAG TGGACTCACC TGGGCTACAA CTCCTTAAAC ATGATGGCAT AAATAAGTTG AACGAACATT AAACGTCCGT GGCGAGTACG ATAACTCGTA GTGTTTTTCC CTCCACTTAA ATCGAAGGGT TGTCGTTGGG ATGGAACGCA ATTAAATACA TGTGTGACGT GTATTTGCGA ACGACGTAAT TATTTTTCAG GGGTTCGAAT CCCCCCCGAA CCGCGGGTAG CGGCCCA

Products

Productgag
MAYTQQATNA ALASTLRGNN PLVNDLANRR LYESAVEQCN AHDRRPKVNF LRSISEEQTL IATKAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSTTYDIGG NFAAHMFKGR DYVHCCMPNM DLRDVMRHNA QKDSIELYLS KLAQKKKVIP PYQKPCFDKY TDDPQSVVCS KPFQHCEGVS HCTDKVYAVA LHSLYDIPAD EFGAALLRRN VHVCYAAFHF SENLLLEDSY VSLDDIGAFF SREGDMLNFS FVAESTLNYT HSYSNVLKYV CKTYFPASSR EVYMKEFLVT RVNTWFCKFS RLDTFVLYRG VYHRGVDKEQ FYSAMEDAWH YKKTLAMMNS ERILLEDSSS VNYWFPKMKD MVIVPLFDVS LQNEGKRLAR KEVMVSKDFV YTVLNHIRTY QSKALTYANV LSFVESIRSR VIINGVTARS EWDVDKALLQ SLSMTFFLQT KLAMLKDDLV VQKFQVHSKS LTEYVWDEIT AAFHNCFPTI KERLINKKLI TVSEKALEIK VPDLYVTFHD RLVKEYKSSV EMPVLDVKKS LEEAEVMYNA LSEISILKDS DKFDVDVFSR MCNTLGVDPL VAAKVMVAVV SNESGLTLTF ERPTEANVAL ALQPTITSKE EGSLKIVSSD VGESSIKEVV RKSEISMLGL TGNTVSDEFQ RSTEIESLQQ FHMVSTETII RKQMHAMVYT GPLKVQQCKN YLDSLVASLS AAVSNLKKII KDTAAIDLET KEKFGVYDVC LKKWLVKPLS KGHAWGVVMD SDYKCFVALL TYDGENIVCG ETWRRVAVSS ESLVYSDMGK IRAIRSVLKD GEPHISSAKV TLVDGVPGCG KTKEILSRVN FDEDLVLVPG KQAAEMIRRR ANSSGLIVAT KENVRTVDSF LMNYGRGPCQ YKRLFLDEGL MLHPGCVNFL VGMSLCSEAF VYGDTQQIPY INRVATFPYP KHLSQLEVDA VETRRTTLRC PADITFFLNQ KYEGQVMCTS SVTRSVSHEV IQGAAVMNPV SKPLKGKVIT FTQSDKSLLL SRGYEDVHTV HEVQGETFED VSLVRLTPTP VGIISKQSPH LLVSLSRHTR SIKYYTVVLD AVVSVLRDLE CVSSYLLDMY KVDVSTQ
Productgag-pol
DescriptionRNA-dependent RNA polymerase
Modifications3421..3423,aa:OTHER
MAYTQQATNA ALASTLRGNN PLVNDLANRR LYESAVEQCN AHDRRPKVNF LRSISEEQTL IATKAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSTTYDIGG NFAAHMFKGR DYVHCCMPNM DLRDVMRHNA QKDSIELYLS KLAQKKKVIP PYQKPCFDKY TDDPQSVVCS KPFQHCEGVS HCTDKVYAVA LHSLYDIPAD EFGAALLRRN VHVCYAAFHF SENLLLEDSY VSLDDIGAFF SREGDMLNFS FVAESTLNYT HSYSNVLKYV CKTYFPASSR EVYMKEFLVT RVNTWFCKFS RLDTFVLYRG VYHRGVDKEQ FYSAMEDAWH YKKTLAMMNS ERILLEDSSS VNYWFPKMKD MVIVPLFDVS LQNEGKRLAR KEVMVSKDFV YTVLNHIRTY QSKALTYANV LSFVESIRSR VIINGVTARS EWDVDKALLQ SLSMTFFLQT KLAMLKDDLV VQKFQVHSKS LTEYVWDEIT AAFHNCFPTI KERLINKKLI TVSEKALEIK VPDLYVTFHD RLVKEYKSSV EMPVLDVKKS LEEAEVMYNA LSEISILKDS DKFDVDVFSR MCNTLGVDPL VAAKVMVAVV SNESGLTLTF ERPTEANVAL ALQPTITSKE EGSLKIVSSD VGESSIKEVV RKSEISMLGL TGNTVSDEFQ RSTEIESLQQ FHMVSTETII RKQMHAMVYT GPLKVQQCKN YLDSLVASLS AAVSNLKKII KDTAAIDLET KEKFGVYDVC LKKWLVKPLS KGHAWGVVMD SDYKCFVALL TYDGENIVCG ETWRRVAVSS ESLVYSDMGK IRAIRSVLKD GEPHISSAKV TLVDGVPGCG KTKEILSRVN FDEDLVLVPG KQAAEMIRRR ANSSGLIVAT KENVRTVDSF LMNYGRGPCQ YKRLFLDEGL MLHPGCVNFL VGMSLCSEAF VYGDTQQIPY INRVATFPYP KHLSQLEVDA VETRRTTLRC PADITFFLNQ KYEGQVMCTS SVTRSVSHEV IQGAAVMNPV SKPLKGKVIT FTQSDKSLLL SRGYEDVHTV HEVQGETFED VSLVRLTPTP VGIISKQSPH LLVSLSRHTR SIKYYTVVLD AVVSVLRDLE CVSSYLLDMY KVDVSTQQQL QIESVYKGVN LFVAAPKTGD VSDMQYYYDK CLPGNSTILN EYDAVTMQIR ENSLNVKDCV LDMSKSVPLP RESETTLKPV IRTAAEKPRK PGLLENLVAM IKRNFNSPEL VGVVDIEDTA SLVVDKFFDA YLIKEKKKPK NIPLLSRASL ERWIEKQEKS TIGQLADFDF IDLPAVDQYR HMIKQQPKQR LDLSIQTEYP ALQTIVYHSK KINALFGPVF SELTRQLLET IDSSRFMFYT RKTPTQIEEF FSDLDSNVPM DILELDISKY DKSQNEFHCA VEYEIWKRLG LDDFLAEVWK HGHRKTTLKD YTAGIKTCLW YQRKSGDVTT FIGNTIIIAA CLSSMLPMER LIKGAFCGDD SILYFPKGTD FPDIQQGANL LWNFEAKLFR KRYGYFCGRY IIHHDRGCIV YYDPLKLISK LGAKHIKNRE HLEEFRTSLC DVAGSLNNCA YYTHLNDAVG EVIKTAPLGS FVYRALVKYL CDKRLFQTLF LE

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