Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200298"

Accession numberr200298 [export]
Locus namegag-pol
Recode1 namepol_r_vir_snakehead
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismSnakehead retrovirus [details]

Sequence

GenBank IDsU26458.1
SequenceRNA of 6054 nucleotides [sequence]

Recoding event

Event typeReadthrough (position: 1,855)
Descriptionproduction of fusion protein and set the ratio between two protein products. potential secondary structure downstream of stop codon
ATGGCCTCCA ACAAATGGTT TGTGTACAGC GACGAGCCAA CAAAAGTAAT ACTAAAACGA GACAAAAGCA AGGAAAAAGA TGAAACTAAA AAGAAGAAAA TTAAAACAGA ACAAAATTCA GATGCAGCTT ACGAAACACC AGGCACCGCG CCTGTACAGA AACCACTGTT GGAAACCACG CCTGAAGCAG AATTAGAAAA GGTTCTTAAA GGGCTAGAAG AGTGGGGATA CAAGGCTTTA GAGAAGAAGA GGGACCCAGA GCTTTGGAAC CCCAATCAAG AAGGACTAGA TGAGTACCTC TTTAGGGGCT GGGTTCAGGG AGGCCTAGCC GATTCTAAGA AAGCCCTCGA GAAAAACATG GAAAAATTTG TACCTTTGTT TGTGGTCACC ATGTCCCAAG CAGTACCATA TTGGCGGCAG ACCATGCAGG CACGCAATCA AAATGGTAAA AAGCAAAAGA ACCGCATTGC TGAACTAGAA AAAGAGGTAG CAGACTTAAC TAGCGCCGGT AGGGGAGCTG ATCAGGTTAT AGCAGGTATG GACAAAGAAC TAAAGAAAAC TGCAGAGAAA TATCAAGCCA AATTAGAAGA ACTAGAGGAG CAGTTAGCTG CGATGACGGT AGAAAAGGAG GAATTGGAAA GCCAGGTTGA AGGGTTAAAG GAATCTCTAG TAGAAGCAGA AACTAAGAAA GTCAGTCTCA TGGAAGTATT GACTATGCCC ACCAGATCAA AAGGACCGAA GAAACGGGGC CCTGATTTGA AACAGATTAG ATCGTTGCAC GTGATGGCTG ATTCATTGGG CATGGACAGT GATGGCATAG ACTGGGATTG GTTGGCTAGA CAAGCCTGGG ACTATGAAGG AGATGAGGAT CCACATGTTA AGGAAGCAGA GGAGGAGGCA TGGCGTGAGA GACAAACATC TCAACCATCC CAACCCTCTC AGTTGAGACC TTTTGTAGCC GCAGGGAACG GTCATAGGGA AGATCAATGG AGACCCCTGA CAGTCACAGA ATTACCCGCA GCCGTTACCG CAGTAGGAGG AGCATGGGAT CCCACGAGGG AAACAGGAAG TGCTAGGTGG AAAAAGATAG TGAAAGCAGC AGAGGCTATA GGATGGGGGA CAGGCGATGT GTGTCAGGTT GTGACCGCTA TGTCACCATC ATGGGCAGAT GTGCCTCCCG AAATAAGAAA TAGGGTGGCT ACTGAGAAAG AAATAAAAGC ATGGTTGATG AAGCAGGGAC CCGGAGGAGG ACAGGGTTTG TTGGAATTTA CTAAGTTAAG ACAAGGACCC ACTGAGAATC CTAGTAACTA CTTGGAAAAG GCTCTAGAAT TGTACCTAGA CTCTCAACCC GGTGATAGAG ACGGTAACAA AGATGACCCC GCATTTCTGC AGCAGGCTAC TCAAGGCCTG TTGCCTTGGT TAAAGAAAGC TGTGATATTA GGAGGAAAAA ACACGTCATG GCAAGAGATG ACTAGCTTCT GCCAGAGGTT GTGGTTGGTC AGAGATCAAT TTGCCGACAA AACAGGTGTC TCAAAGGCCC GACCTATTGT CAGAAATGAA GGACCAAGAC CACAACAAGG GCACAGCAAA ATTGTTTTTG GGGGAAACTG CCGAAATTGT GGAAAAGCAG GACACATGGC TAGAGATTGT TGGGCCAAAG GTGGTGGACA AGAAGGAAAA GGACCGCGTC AGAACACCAC CTGGAAACCC AAATCTGGAG CAATAGCCAG CGCCCCACCT GCTGAAAGCC CTTATGCTGA TTGTGCTAAA CAGTTAGCCG ATATCGAAAA ACGCCTTAAG GACCTCACCA CTGCTGGTGG AGGACCCAAA GGACCCAACC CATTCCACAA ACCATAGGGC GTTGCGGCCC TCGCCGCCCC ACTCTGCTCC TTGAAGGGAC GGCCACACGT ATCTGTAGAG ATAGAGGGCC ACAAGATCGA GTGTCTAGTG GACACAGGAG CAGAGGTGTC ATTAACATCC CTTCAATTAC AGGCACAACG ATTTGAACAG GTGGTTGGTT TGGGAGGCAA ACCGGTGAGA GTAGGGATAG CGGATCATGT CGATACCACA GTAGGACAAG TAAAAGGAAA AGGCTGCTGG CGAATATCAC AGGAATTAGC GGAAAATATC CTAGGAAATG ATCTGTTGAG GTCATTAGGA TTAATAGTGG ATCAATGCAA CGGAGTTCTA TGGCAGGCTA GTGAGGGCCT AGGACCCGAT AATTGGATGG CAGCAGAAAC ACTAAGGATA TACAGTATTA AATCACCCGG TCATTATAAC CTACCTGAAC TATTAGCCAC TAAAGATGAA CAACTAGCTG ATATCCTATG GAACAACGTT GAAGCCTTTG CTACTCACAG AAATGATTGC GGGAACTTAC AGGGCATGAC TGCCAGTTTT ACCGCTGACC ATCCAAAAAT GATTAAACAA TACCCGGTAC CGGATGCATC ACATGCTAGC ATAAAGGAAA CTGTGGAAGC ATTATTGGAA CAAGGTGTTC TTAGAAAGTG TAATAGCACA GTTAACAGTG CTATATGGCC AGTAGGCAAG CCGGATGGAT CATGGAGGCT AACCATTGAT TATAGGCCAC TCAACTCGGC TGTCTCGTGT CCATATCCCA CAGTAGCCTC AACCCCAGAG TTGTTTGCTA AACTAGAGAA GAAATACCAG GTGTATAGCT CACTGGACAT TAGCAACGGC TTCTGGTCCA TCAGACTGGA GGAAGAATGT CAATACTTGT TTGCATTTAC TTTCGATACG CAACAGTATA CATGGACCAG GCTACCACAG GGATTTCATG CTTCACCAGG CATATTCCAC CAAGCCCTGT ACAATGGACT GGCCTCCTGT AAAACAGCGA TTGAAAGTCA GGGTTGTAAA CTATTGCAAT ATGTAGATGA TATCCTGTTG ATGAGTGAAG ATAGGGACCA TCATTTAAGG TCGCTGGCAA TATTACTGCA AGGCCTCAAG GATCTAGGAG TAAAAATCAA TCCTAAGAAG TCCCACTTTT GCAAAGATCA GGTGCAGTAC CTGGGAGTCA ATGTAGGAGC CGACACCAGA TCACTGATCG ATGCCAGAAG CCAACTGATA AGAACGTTAG ACATCCCATT GACGGTGCAA GGCTTAAGAT CAGCGCTGGG GTTGTTTAAT TTCTGCAGAG CATGGATACC TGAGTTCAGT CGGAAAACAC AGAGTTTGTA TGATATGCTT AAAGGAGACT GTAAATCTAC TGATAAGCTA AAGTGGACTG AGGATAATCT GAATAAATTT AAACTCTTAA AGGACGAAGT AGCCAGCGCA TGTGTGTTGG GCCTACCTGA TCCCACCTTA CCTTTCAGAC ATCTGATAGG AATCAGACAG GGACATTTTC TCTGCAGCCT TGTCCAGAAA GATGATAATG GCATGTGGCA CGTGCTAGGG TTCTATTCCA GGAAAATGAC ACCTGTAGAA AGTAACCTAG GAATATGTGA ACAATATGCT GAATGTGCTG CCTGGGCCAT CAGTGCCTGC AATCTGGTCA GTGGGTTCGG CAGAAAGATC ATAGTAACAT CTCACTCACC TGTAAAGTTT ATCCTCCAGA CGACGCCTAA TGTGAGTAAT CAACGTTTAG CCAGGTGGCA TAGAATATTG ACCCAAGAAG ACATCACTAT AGAAACTGAT GCTAGTATCC AAGGATGGTT TGTCCCGGAG CCTTATGAGG GGGAACAGCA CCAGTGCCGA CCTCATGATG ACACAATAAC ATGGAGAGTC AGCACTAGAG CTATGCCCAC GGGTGAGAAG TGGTGGATAG ACGGAAGTAG ATATTGGGAT CATGATAAGG GAGGCTACGT TACAGGATGG GCAGCATTGA GAGAGGATAA GAAAAATCAG CTGGGGGGTG CCTTAGAGGG ACATGTGAGT GCACAAGTGG CAGAGTTAGT GGCGCTAAGG GAAGCCCTAA GGCTACAAAG ACCTCTGACC CTATATACTG ACAGTACTTA CGTGCTCGGC ATTTGTACCA AATACCTTGC TGTTTGGAAA AGGAGGGGTA TGGTCAATGC AGATGGATCA CAGATCAGCA ACCAGAATAT CCTACAAGAA ATTTGGCAAT TGATTGAACA TGATTCTACA CAAACGCTTG GTATAGTCAA GGTAAAAGCA CATACCCAGC GTAAATGTAG CACGCATGAA CAACAACTGA ATAATGATGT AGATCAGCCG GCAAAACAAT ATGCTAAGGA AGAACCTAAC ATGTCAGTCA TAGCACCTCT GCAAGTCTAT CCATTATGGA TAGGTTTGGT ACCATGTAAA GAACCAAAAT TGTGGGAAAA TATACAACAT CACATCACAA AGGTTGACCT GCCCGACTTC CAGAAACAAC TTGCAGAAAT AATGCCACAA CAGGATATTT CACACTGCAC ACTAGCATAT TTTGATAAAC CATCCCCAGA AGCAACCAAA TATCATGATA AAATAAAACC CTACCTGGGA AAAGGACAGC AGCTCACACT GTGTGACACC TACATAGGCA AAGAAGGAGC TGCGATACTG GGACAATTGA GACCAGACAT GCAAGCTCTT CATCAGGCAG AAGGGGAAGT GCACGTTAGC CTAGGTACTC GTGCTGGGCA CTGTCCACAG GAATTAGGTA CAATGTTAAC TAACCTGTTG AAAAGCACCC AAGAACGAAT ATGGCAGGAT CCACCTGTTT TTAAACTGCA TGATGAGACA GGAAAAGTAC AAGGCTACGT CATTAAGACA ACCTTAGGCA TGAAAACATG GATAATGAAT GATCACCTGG TGACTCAGAG TGAACAGACT GAGGGTAGGG CTAAGCTAAG CAGCACGGAA GGCTACGCCT TAGCCCAACA ATACCATCAT CTGTACGGTC ACCCCTCAGA GGAAAGCCTT AGAAAGGTGT TGACCAAACG ATTTGTGTGG GAAGATATGG GACAACATTG TAAGGAAATA ACTAACACCT GTCTAACCTG TGCAAAATAT AAAGTTCTCA GAGCAGGACC ACCAATGGGC GTAGGACGAT CGGCTGAAGG GCCCTGCCAA AAACTACAGG TAGACCATGT GGGACCTTTG GGACCTGGTA CCCATGGATA CAGGTACCTC ACAACCATGG TTGATGTGTA CACAGGTTGG TTCTGGGCCA AACCCTGTAG AGGTCCAACT ACGGGTGCCA CTATAGCGGC CTTAGAGGAA CACATCAGTA TTTGGGGGGT ACCCTATTCT ATACAATCTG ATAATGGCAC CGCGTTCACT AGTAAAGCCA TGCAAGAATG GGCCAATACG TATGGCATAG AATGGAAGGT GGGGGCTATA TACCATCCTC AATCACAGGG AAAGGTAGAA AGAAAACATC GACTGCTCAA AGACAGACTT AAAAGGGCCA CACATGAAGG AAAGAACTGG GTTCAAGCAC TACCCTCCAT ACTACTATTT ATTAACTCTA TGCATCCACG AGATCAGTTT TCTGCCTATG AACTAATGAC AGGGAGAGTA CCACACCTAG GTGGGTACCA CCCACACCCC CTAGAGACAG CCAAAGAAGA AGAAGTACGG ATATTCTTAA GAGCAACACA TGATTGCATG CAAAATAAGA AGTGGGAAGA ACAGTTAGAA AAGGTCACTA AAGCAGAAGC CCACTCACAC TGGACTCAGA GGAGCCCTAA TTTAGAACCT GGCTGCATTG TGTTAGTAAG AAAGTTCACC GGGGATGCCT TCTCACCTAA ATGGGAAGGA CCATATGTGA TAACAGAAAC TACCAAATAT GCTGCTAAAG TACAGGCCAT GTCTGACAAA GTAACACAAC ATTCTGGGTG GATACATAGG ACTCACCTTG TGTTGTTTCC TTCACAGAAC AAGCGTTGGG CGGATCCTGG AAATCCCGGA AACCAACCAG ACGAGGACTG TACAGGTAAG AAAGGGACAG TTAGTACAGC TGACATGTCC CCAACTACCT CCACCACAAG GGACCGGGGT ATTAATATGG GGACGGAACA AACGCACAGG AGGAGGAGCC CTAGATTTCA ACGGGGTTCT GACAGTCCCA GTGGGGGACA ATGA

Products

Productgag
MASNKWFVYS DEPTKVILKR DKSKEKDETK KKKIKTEQNS DAAYETPGTA PVQKPLLETT PEAELEKVLK GLEEWGYKAL EKKRDPELWN PNQEGLDEYL FRGWVQGGLA DSKKALEKNM EKFVPLFVVT MSQAVPYWRQ TMQARNQNGK KQKNRIAELE KEVADLTSAG RGADQVIAGM DKELKKTAEK YQAKLEELEE QLAAMTVEKE ELESQVEGLK ESLVEAETKK VSLMEVLTMP TRSKGPKKRG PDLKQIRSLH VMADSLGMDS DGIDWDWLAR QAWDYEGDED PHVKEAEEEA WRERQTSQPS QPSQLRPFVA AGNGHREDQW RPLTVTELPA AVTAVGGAWD PTRETGSARW KKIVKAAEAI GWGTGDVCQV VTAMSPSWAD VPPEIRNRVA TEKEIKAWLM KQGPGGGQGL LEFTKLRQGP TENPSNYLEK ALELYLDSQP GDRDGNKDDP AFLQQATQGL LPWLKKAVIL GGKNTSWQEM TSFCQRLWLV RDQFADKTGV SKARPIVRNE GPRPQQGHSK IVFGGNCRNC GKAGHMARDC WAKGGGQEGK GPRQNTTWKP KSGAIASAPP AESPYADCAK QLADIEKRLK DLTTAGGGPK GPNPFHKP
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase
Modifications1855..1857,aa:OTHER
MASNKWFVYS DEPTKVILKR DKSKEKDETK KKKIKTEQNS DAAYETPGTA PVQKPLLETT PEAELEKVLK GLEEWGYKAL EKKRDPELWN PNQEGLDEYL FRGWVQGGLA DSKKALEKNM EKFVPLFVVT MSQAVPYWRQ TMQARNQNGK KQKNRIAELE KEVADLTSAG RGADQVIAGM DKELKKTAEK YQAKLEELEE QLAAMTVEKE ELESQVEGLK ESLVEAETKK VSLMEVLTMP TRSKGPKKRG PDLKQIRSLH VMADSLGMDS DGIDWDWLAR QAWDYEGDED PHVKEAEEEA WRERQTSQPS QPSQLRPFVA AGNGHREDQW RPLTVTELPA AVTAVGGAWD PTRETGSARW KKIVKAAEAI GWGTGDVCQV VTAMSPSWAD VPPEIRNRVA TEKEIKAWLM KQGPGGGQGL LEFTKLRQGP TENPSNYLEK ALELYLDSQP GDRDGNKDDP AFLQQATQGL LPWLKKAVIL GGKNTSWQEM TSFCQRLWLV RDQFADKTGV SKARPIVRNE GPRPQQGHSK IVFGGNCRNC GKAGHMARDC WAKGGGQEGK GPRQNTTWKP KSGAIASAPP AESPYADCAK QLADIEKRLK DLTTAGGGPK GPNPFHKPQG VAALAAPLCS LKGRPHVSVE IEGHKIECLV DTGAEVSLTS LQLQAQRFEQ VVGLGGKPVR VGIADHVDTT VGQVKGKGCW RISQELAENI LGNDLLRSLG LIVDQCNGVL WQASEGLGPD NWMAAETLRI YSIKSPGHYN LPELLATKDE QLADILWNNV EAFATHRNDC GNLQGMTASF TADHPKMIKQ YPVPDASHAS IKETVEALLE QGVLRKCNST VNSAIWPVGK PDGSWRLTID YRPLNSAVSC PYPTVASTPE LFAKLEKKYQ VYSSLDISNG FWSIRLEEEC QYLFAFTFDT QQYTWTRLPQ GFHASPGIFH QALYNGLASC KTAIESQGCK LLQYVDDILL MSEDRDHHLR SLAILLQGLK DLGVKINPKK SHFCKDQVQY LGVNVGADTR SLIDARSQLI RTLDIPLTVQ GLRSALGLFN FCRAWIPEFS RKTQSLYDML KGDCKSTDKL KWTEDNLNKF KLLKDEVASA CVLGLPDPTL PFRHLIGIRQ GHFLCSLVQK DDNGMWHVLG FYSRKMTPVE SNLGICEQYA ECAAWAISAC NLVSGFGRKI IVTSHSPVKF ILQTTPNVSN QRLARWHRIL TQEDITIETD ASIQGWFVPE PYEGEQHQCR PHDDTITWRV STRAMPTGEK WWIDGSRYWD HDKGGYVTGW AALREDKKNQ LGGALEGHVS AQVAELVALR EALRLQRPLT LYTDSTYVLG ICTKYLAVWK RRGMVNADGS QISNQNILQE IWQLIEHDST QTLGIVKVKA HTQRKCSTHE QQLNNDVDQP AKQYAKEEPN MSVIAPLQVY PLWIGLVPCK EPKLWENIQH HITKVDLPDF QKQLAEIMPQ QDISHCTLAY FDKPSPEATK YHDKIKPYLG KGQQLTLCDT YIGKEGAAIL GQLRPDMQAL HQAEGEVHVS LGTRAGHCPQ ELGTMLTNLL KSTQERIWQD PPVFKLHDET GKVQGYVIKT TLGMKTWIMN DHLVTQSEQT EGRAKLSSTE GYALAQQYHH LYGHPSEESL RKVLTKRFVW EDMGQHCKEI TNTCLTCAKY KVLRAGPPMG VGRSAEGPCQ KLQVDHVGPL GPGTHGYRYL TTMVDVYTGW FWAKPCRGPT TGATIAALEE HISIWGVPYS IQSDNGTAFT SKAMQEWANT YGIEWKVGAI YHPQSQGKVE RKHRLLKDRL KRATHEGKNW VQALPSILLF INSMHPRDQF SAYELMTGRV PHLGGYHPHP LETAKEEEVR IFLRATHDCM QNKKWEEQLE KVTKAEAHSH WTQRSPNLEP GCIVLVRKFT GDAFSPKWEG PYVITETTKY AAKVQAMSDK VTQHSGWIHR THLVLFPSQN KRWADPGNPG NQPDEDCTGK KGTVSTADMS PTTSTTRDRG INMGTEQTHR RRSPRFQRGS DSPSGGQ

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