Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200301"

Accession numberr200301 [export]
Locus namereplicase readthrough
Recode1 namepol_r_vir_tbsv1
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismTomato bushy stunt virus [details]
AcronymTBSV

Sequence

GenBank IDsM21958.1
Sequencess-RNA of 2457 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 889)
Descriptionproduction of fusion protein and set the ratio between two protein products. TBSV-cherry; Accession no. NC_001554
ATGGAGACCA TCAAGAGAAT GATTTGGCCT AAGAAAGAGA TTTTTGTGGG TGATTTCGCA ACCGGAGTGA ATAGGACAGT TCCGGTGAAC ATCTTTCAAT TGGTGTGTCG TGTGGTTCTG AGATACATGA GGACAGGGAA AATAGAGTGT GATTCTGACA GCATGACTAA GTTTATAGTT GAATTACTCA AAACTGATTG TGCTGCCAAA TGGGAATGGT TCATGAAGAG ACGGCAGAGG GGTGATTACA TTGTCCCTCT ATCTATAGCC TCCATACCAA TCATACCGCT GTTGAGTTAT GCCACTAGGG TACGCGCAGT CTCAGTCAAG GCTTTTGGCA ATGAACTATC GTTCAATGTC AGGGTGCCTA GACCATCTGT ACCTAAGAAA GGATTGCTCC TCAGACTGGC GGCAGGTCTA GCGTTAGCTC CTATATGCGC GCTGGCCGTG TACGCTACCC TACCTAGGGA AAAACTGTCG GTATTTAAGC TGAGAACTGA GGCACGAGCA CACATGGAGG ATGAGAGAGA AGCGACAGAT TGTCTGGTGG TTGAGCCGGC AAGGGAACTT AAGGGTAAAG ATGGTGAGGA TCTCCTCACT GGTAGTAGAT TGACTAAGGT GATCGCGTCC ACTGGGCGCC CTCGTCGAAG ACCTTATGCG GCAAAGATCG CACAGGTGGC GAGAGCAAAG GTGGGTTACC TTAAGAACAG TCCAGAGAAT AGACTAATCT ACCAGAGGGT GATGATCGAG ATCATGGACA AAGACTGCGT CAGGTATGTT GACAGGGATG TCATATTGCC TTTGGCTATT GGATGCTGTT TTGTCTATCC GGATGGAGTG GAGGAGTCGG CGGCACTATG GGGCTCACAG GAGTCCCTGG GTGTCAAATA GGGAGGCCTA GTACGTCTAC CTGGGGTTGT AACACAGATC AATCGAGATA TCCCATCTGA TGTGTTACTT CCTCAGGAGG TGCTAGAGGT TCGTACAGGA CCTCCCAATG CTAAGGACCG TAATATATTT ATGGTTGCAG GTTGCCCATC ACAGGCACGG TTCTTAGTAC ATAATCACTG CCTGAAAAAC CTTAAAAGGG GTCTTGTGGA GAGAGTCTTC TGCGTAGAGA GAAACGGGAA GCTCGCTCGC ACTCCACAAC CTACCAAAGG AGCCTTTGGA CGTCTTTCCC CGTTCAGGAA AGCGGTTTGT GAGAAGGTTG GGGTAGCCCA CCGACTTGGG TATGATGGGT TTCTGTCATA CTACAGCGGT GCGAAACTCC GTACTTACAC ACGAGCCGTG GAGAGTCTGC ATATCACACC TGTCTCCGAG AGGGATAGTC ACTTGACTAC CTTCGTAAAA GCAGAGAAGA TATCGACGTC TAAGGGTGAC CCAGCACCTC GGGTGATTCA GCCTCGAAAC CCGAGGTACA ATGTGGAACT TGGAAGATAT CTACGGCATA TGGAATCCAA GCTGATGAAA GCTGTTGATG GCGTGTTCGG AGAGACGACA TGCATCAAAG GATACACAGC TGATGAGGTA GGTGCAATTT TCCGGGCTAA ATGGGACAGG TTTGATAAGC CTGTCGCCAT AGGGCTCGAT GCATCTAGGT TTGATCAACA CTGTTCCGTT GAAGCATTGC AATATGAGCA TAGCTTCTAC AGGGCCATGT ACCCTGGCAA CAAGCTCTTG GGCAAGTTGT TGGAATGGCA GCTCCATAAT AAAGGTAAAG GTTATGTTCC AGATGGAACT ATAACCTATC GCAAGGAGGG CTGTCGCATG AGTGGGGATA TAAACACCTC GTTGGGCAAC TATCTACTGA TGTGTGCAAT GGTACATGGG TACATGCGTC ATCTGGGGAT TAATGAGTTT AGTCTGGCAA ACTGTGGGGA TGATTGCGTC CTAATTGTCG AACGCAGGAA TCTTAAGCAG ATACAGAGAA CTTTACCGGA GTATTTCCTC AATCTGGGAT ATACTATGAA GGTGGAGCAA CCTGTATTTC AACTGGAAGA GGTTGAATTT TGCCAGGCAC ACCCAGTACA GTTTCAAGGC GGTTGGAAGA TGGTTCGAAA CGTCCGTACT GCTATGAGCA AGGATGTGCA CTGTGTCAAC AATATACGCG ATTTGGCGAC GAGGAGAGCT TGGAGTAATG CTCAACATCA TGGGGGTCTA GCGCTTAGTG CTGGTATTCC AGTTGTGGAG ACGTTTTACT CTAGGTTTAA GCTTTATGAT GTACCTCGTA AACATCAACG TATTGACACG GTCACAAATG TGCACAAGTG GCGTGGATCC GGTGGGAGTT ATGTTGTGAC CCCTGAATCT AGGGCTAGCT TTTGGGCTGC CTTTGGACTC ACGGGGGATG AGCAACTGGC TCTGGAGGAC CGTCTGGAAA GATGGGAGAT GGATCTGTTT GGAGAGGAGG GTGTTGACGC TCATGAGCCC AGCATCCTCG ACTCCGCCGT AGCTTGA

Products

ProductCP
Descriptioncapsid protein
METIKRMIWP KKEIFVGDFA TGVNRTVPVN IFQLVCRVVL RYMRTGKIEC DSDSMTKFIV ELLKTDCAAK WEWFMKRRQR GDYIVPLSIA SIPIIPLLSY ATRVRAVSVK AFGNELSFNV RVPRPSVPKK GLLLRLAAGL ALAPICALAV YATLPREKLS VFKLRTEARA HMEDEREATD CLVVEPAREL KGKDGEDLLT GSRLTKVIAS TGRPRRRPYA AKIAQVARAK VGYLKNSPEN RLIYQRVMIE IMDKDCVRYV DRDVILPLAI GCCFVYPDGV EESAALWGSQ ESLGVK
ProductCP-ORF2
DescriptionRNA-dependent RNA polymerase
Modifications889..891,aa:OTHER
METIKRMIWP KKEIFVGDFA TGVNRTVPVN IFQLVCRVVL RYMRTGKIEC DSDSMTKFIV ELLKTDCAAK WEWFMKRRQR GDYIVPLSIA SIPIIPLLSY ATRVRAVSVK AFGNELSFNV RVPRPSVPKK GLLLRLAAGL ALAPICALAV YATLPREKLS VFKLRTEARA HMEDEREATD CLVVEPAREL KGKDGEDLLT GSRLTKVIAS TGRPRRRPYA AKIAQVARAK VGYLKNSPEN RLIYQRVMIE IMDKDCVRYV DRDVILPLAI GCCFVYPDGV EESAALWGSQ ESLGVKQGGL VRLPGVVTQI NRDIPSDVLL PQEVLEVRTG PPNAKDRNIF MVAGCPSQAR FLVHNHCLKN LKRGLVERVF CVERNGKLAR TPQPTKGAFG RLSPFRKAVC EKVGVAHRLG YDGFLSYYSG AKLRTYTRAV ESLHITPVSE RDSHLTTFVK AEKISTSKGD PAPRVIQPRN PRYNVELGRY LRHMESKLMK AVDGVFGETT CIKGYTADEV GAIFRAKWDR FDKPVAIGLD ASRFDQHCSV EALQYEHSFY RAMYPGNKLL GKLLEWQLHN KGKGYVPDGT ITYRKEGCRM SGDINTSLGN YLLMCAMVHG YMRHLGINEF SLANCGDDCV LIVERRNLKQ IQRTLPEYFL NLGYTMKVEQ PVFQLEEVEF CQAHPVQFQG GWKMVRNVRT AMSKDVHCVN NIRDLATRRA WSNAQHHGGL ALSAGIPVVE TFYSRFKLYD VPRKHQRIDT VTNVHKWRGS GGSYVVTPES RASFWAAFGL TGDEQLALED RLERWEMDLF GEEGVDAHEP SILDSAVA

Publications