Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200303"

Accession numberr200303 [export]
Locus namep28-p88
Recode1 namepol_r_vir_tcv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismTurnip crinkle virus [details]
AcronymTCV

Sequence

GenBank IDsM22445.1
Sequencess-RNA of 2389 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 812)
Descriptionproduction of fusion protein and set the ratio between two protein products. Accession no. M22445 Bold sequence is maximum necessary for 0.3 to 1.3% readthrough. Minimum sequence necessary for readthrough is unknown. All tombusviruses are suspected to readthrough for polymerase translation.
GTAATCTGCA AATCCCTGCA CCCGCCTAAA ATTGCCCTCA TCAACCTTCT CTCTATTCAC GATGCCTCTT CTACACACAC TCAACACAGC GCTCGCAGTG GGACTCCTAG GAGCCAGGTA CTACCCTGAG GTTCAAACCT TCTTGGGGCT GCCTGACTAC GTGGGTCACA TGAAGAATGT AGTACGGTCT GTTTTCCAGG GATCTGGGCT AGTAGTAGTG TCCTCCGACA CAGTCGGTGT CAGGGGGACG TATAGTAATA GANGTCAGAT AGGTAGTAGT CTCGGGTGTA TACTAGCCGT TCCGGATAGC GGGGCGGATA TAGAAATAGA CCTAGATAGG TTGGTAGGAA CGGAAGAGGA AGCCACATCC TGTTTGGTGG AGGCGGTAGG TAGTACCGCG GATGTCCCCA GGAGGAGAGT TCGTCAAAAG GGGCGGTTTG CTATGCATGC CGTCAACGCA GCAAAGCTGC ACTTTTGTGG CGTCCCAAAA CCCACTGAAG CGAATCGACT AGCGGTCTCA AAATGGCTTG TCCAATACTG CAAAGAGAGA CATGTCGTAG ACAGCCACAT CAGAACGATA GTCAATACGG CTCTTCCTAG AGTGTTCACG CCTGACGCGG AAGACATTCA GGTCGTGCTG GATTTGCACA GTGTAAGAGC ACACGACCAC CGCAACGCCC TAGCCGAAGC AGGCAAAGTG CGGAAGTGGT GGGTCAATCT CGCGATGCAT CCCATGACTG GGAGGTCGTG GTCTAGGGCT TGGAGGCGAT TATGCCGACT GCCTGACGAC CAGGCGATCT CTTTTGTCCG CTAGGGGTGC TTGCGGGAGC TGGTCGGGAG GGAGACTCAA ATCTCCAGGG GTGAAAACCC GGCCATGCGC GTGTTCCCGT TAGCAAATCC CCCGAAGGTT CGACGCATCT TCCATATCTG TGGAATGGGC AATGGTTTAG ACTTTGGAGT CCACAACAAC TCACTCAACA ATTTGAGAAG AGGGTTGATG GAAAGAGTCT TTTACGTTGA AGATGCGCAG AAGCAATTGA AACCAGCCCC CCAACCGATC CCAGGGATTT TCGGGAAGTT GAGTGGGATT CGGAGACGAT TGGTCAGGTT GGCCGGAAAT CATACCCCTG TGCCTCGGGA GAAATACCCG TCGTTCTACA AGGGCAGGAG GGCCACCATA TACCAAAAGG CTTTGGATCT CTACATGACA TGCCGGCTAT CCCGGAAGGA CGCAGAACTC AAAACATTCG TGAAGGCAGA AAAGATCAAT TTCACGGCTA AGAAAGACCC GGCTCCACGG GTCATCCAGC CGAGGGACCC ACGATATAAC ATTGAGGTTG GGAAATACTT GAAACCGTAC GAGCACCATT TATATCGGGC AATTGACGCT ATGTGGGGTG GGCCCACTGT GCTGAAAGGA TACGATGTGG GGGAGCTTGG AAACATTATG AGTAACACCT GGGATAAATT CCGGAAAACG TGTGCGATAG GATTTGACAT GAAGAGATTC GACCAGCACG TATCCGTGGA CGCCCTACGA TGGGAACACA GTGTATACAA CGCGGGCTTT AACTGTCCCG AGTTGGCACA GCTGCTAACT TGGCAGTTGA CCAACAAGGG AGTTGGGAGA GCCTCCGATG GCTTTATCAA ATACCAAGTT GATGGTTGTC GCATGTCCGG AGATGTTAAC ACAGCCTTGG GCAACTGCCT ACTGGCTTGC TCTATCACCA AGTACTTAAT GAAGGGAATC AAATGCAAAT TAATCAACAA TGGAGACGAT TGTGTGCTGT TCTTCGAAGC TGATGAAGTC GACAGGGTGC GCGAAAGGCT GCATCATTGG ATCGACTTTG GGTTTCAATG CATAGCGGAA GAACCACAAT ACGAGTTGGA GAAAGTTGAA TTTTGCCAGA TGTCCCCTAT TTTCGATGGT GAAGGGTGGG TCATGGTCAG AAACCCCCGT GTGAGCCTCT CCAAGGACAG CTACAGCACC ACACAATGGG CGAATGAGAA AGATGCAGCC AGATGGTTGG CTGCCATCGG AGAGTGTGGC TTGGCTATTG CAGGTGGCGT ACCAGTGTTA CAATCATATT ATTCTTGCCT GAAGAGGAAT TTTGGACCCC TGGCCGGGGA CTACAAGAAG AAGATGCAAG ATGTTTCCTT TGATAGTGGA TTCTACAGGT TATCCAAGAA CGGGATGAGG GGCAGCAAAG ACGTGTCCCA AGATGCTAGG TTCAGCTTTT ACCGGGGGTT CGGCTACACT CCAGACGAGC AGGAAGCGCT TGAGGAGTAC TACGACAACC TGCAACTGCT CTGTGAGTGG GACCCCACGG GATATAAAGA AGAACTTAGT GATAGATGGA TCCTGAACGA ATTCCCTACA ACTCTCTAA

Products

Productp28-p88
DescriptionRNA-dependent RNA polymerase
Modifications812..814,aa:OTHER
MPLLHTLNTA LAVGLLGARY YPEVQTFLGL PDYVGHMKNV VRSVFQGSGL VVVSSDTVGV RGTYSNRXQI GSSLGCILAV PDSGADIEID LDRLVGTEEE ATSCLVEAVG STADVPRRRV RQKGRFAMHA VNAAKLHFCG VPKPTEANRL AVSKWLVQYC KERHVVDSHI RTIVNTALPR VFTPDAEDIQ VVLDLHSVRA HDHRNALAEA GKVRKWWVNL AMHPMTGRSW SRAWRRLCRL PDDQAISFVR QGCLRELVGR ETQISRGENP AMRVFPLANP PKVRRIFHIC GMGNGLDFGV HNNSLNNLRR GLMERVFYVE DAQKQLKPAP QPIPGIFGKL SGIRRRLVRL AGNHTPVPRE KYPSFYKGRR ATIYQKALDL YMTCRLSRKD AELKTFVKAE KINFTAKKDP APRVIQPRDP RYNIEVGKYL KPYEHHLYRA IDAMWGGPTV LKGYDVGELG NIMSNTWDKF RKTCAIGFDM KRFDQHVSVD ALRWEHSVYN AGFNCPELAQ LLTWQLTNKG VGRASDGFIK YQVDGCRMSG DVNTALGNCL LACSITKYLM KGIKCKLINN GDDCVLFFEA DEVDRVRERL HHWIDFGFQC IAEEPQYELE KVEFCQMSPI FDGEGWVMVR NPRVSLSKDS YSTTQWANEK DAARWLAAIG ECGLAIAGGV PVLQSYYSCL KRNFGPLAGD YKKKMQDVSF DSGFYRLSKN GMRGSKDVSQ DARFSFYRGF GYTPDEQEAL EEYYDNLQLL CEWDPTGYKE ELSDRWILNE FPTTL
Productp28
MPLLHTLNTA LAVGLLGARY YPEVQTFLGL PDYVGHMKNV VRSVFQGSGL VVVSSDTVGV RGTYSNRXQI GSSLGCILAV PDSGADIEID LDRLVGTEEE ATSCLVEAVG STADVPRRRV RQKGRFAMHA VNAAKLHFCG VPKPTEANRL AVSKWLVQYC KERHVVDSHI RTIVNTALPR VFTPDAEDIQ VVLDLHSVRA HDHRNALAEA GKVRKWWVNL AMHPMTGRSW SRAWRRLCRL PDDQAISFVR

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