Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200305"

Accession numberr200305 [export]
Locus nameHelicase/Methyl Trans. read-through
Recode1 namepol_r_vir_tmv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismTobacco mosaic virus [details]
AcronymTMV

Sequence

GenBank IDsAF273221.1
Sequencess-RNA of 4919 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,417)
Descriptionproduction of fusion protein and set the ratio between two protein products. TMV Accession no. AF273221
GTATTTTTAC AACAATTACC AACAACAACA AACAACAAAC AACATTACAA TTACTATTTA CAATTACAAT GGCATACACA CAGACAGCTA CCACATCAGC TTTGCTGGAC ACTGTCCGAG GAAACAACTC CTTGGTCAAT GATCTAGCAA AGCGTCGTCT TTACGACACA GCGGTTGAAG AGTTTAACGC TCGTGACCGC AGGCCCAAAG TGAACTTTTC AAAAGTAATA AGCGAGGAGC AGACGCTTAT TGCTACCCGG GCGTATCCAG AATTCCAAAT TACATTTTAT AACACGCAAA ATGCCGTGCA TTCGCTTGCA GGTGGATTGC GATCTTTAGA ACTGGAATAT CTGATGATGC AAATTCCCTA CGGATCATTG ACTTATGACA TAGGCGGGAA TTTTGCATCG CATCTGTTCA AGGGACGAGC ATATGTACAC TGCTGCATGC CCAACCTGGA CGTTCGAGAC ATCATGCGGC ATGAAGGCCA GAAAGACAGT ATTGAACTAT ACCTTTCTAG GCTAGAGAGA GGGGGAAAAA CAGTCCCCAA CTTCCAAAAG GAAGCATTTG ACAGATACGC AGAAATTCCT GAAGACGCTG TCTGTCACAA TACTTTCCAG ACATGCGAAC ATCAGCCGAT GCAACAATCA GGCAGAGTGT ATGCCATTGC GCTACACAGC ATATATGACA TACCCGCTGA TGAGTTCGGG GCAGCACTCT TGAGGAAAAA TGTCCATACG TGCTATGCCG CTTTCCACTT CTCTGAGAAC CTGCTTCTTG AAGATTCATA CGTCAATCTG GACGAAATCA ACGCGTGTTT TTCGCGCGAT GGAGACAAGT TGACCTTTTC TTTTGCATCA GAGAGTACTC TTAATTACTG TCATAGTTAT TCTAATATTC TTAAGTATGT GTGCAAAACT TACTTCCCGG CCTCTAATAG AGAGGTTTAC ATGAAGGAGT TTTTAGTCAC CAGGGTTAAT ACCTGGTTTT GTAAGTTTTC TAGAATAGAT ACTTTTCTTT TGTACAAAGG TGTGGCCCAT AAAGGTGTAG ATAGTGAGCA GTTTTATACT GCAATGGAAG ACGCATGGCA TTACAAAAAG ACTCTTGCAA TGTGCAACAG CGAGAGAATC CTCCTTGAGG ATTCATCAAC AGTCAATTAC TGGTTTCCCG AAATGAGGGA TATGGTCATC GTACCATTAT TCGACATTTC TTTGGAGACT AGTAAGAGGA CGCGCAAGGA AGTCTTAGTG TCCAAGGATT TCGTGTTTAC AGTGCTTAAC CACATTCGAA CATACCAGGC AAAAGCTCTT ACATACGTAA ATGTTTTGTC CTTCGTCGAA TCGATTCGAT CGAGGGTAAT CATTAACGGT GTGACAGCGA GGTCCGAATG GGATGTGGAC AAATCTTTGT TACAATCCTT GTCCATGACG TTTTACCTGC ATACTAAGCT TGCCGTTCTA AAGGATGACT TACTGATTAG CAAGTTTAGT CTCGGTTCGA AAACGGTGTG CCAGCATGTG TGGGATGAGA TTTCACTGGC GTTTGGGAAC GCATTTCCCT CCGTGAAAGA GAGGCTCTTG AACAGGAAAC TTATCAGAGT GGCAGGCGAC GCACTAGAGA TCAGGGTGCC TGATCTATAT GTGACCTTCC ACGACCGATT AGTGACTGAG TACAAGGCCT CTGTGGACAT GCCTGCGCTT GACATTAGGA AGAAGATGGA AGAAACGGAA GTGATGTACA ATGCACTTTC AGAGTTATCG GTGTTAAGGG AGTCTGACAA ATTCGATGTT GATGTTTTTT CCCAGATGTG CCAATCTTTG GAAGTTGACG CAATGACGGC AGCGAAGGTT ATAGTCGCGG TCATGAGCAA TAAGAGCGGT CTGACTCTCA CATTTGAACG ACCTACTGAG GCGAATGTTG CGCTAGCTTT ACAGGATCAA GAAAAGGCTT CAGAAGGTGC TTTGGTAGTT ACCTCAAGAG AAGTTGAAGA ACCGTCCATG AAGGGTTCGA TGGCCAGAGG AGAGTTACAA TTAGCTGGTC TTGCTGGAGA TCATCCGGAG TCGTCCTATT CTAGGAACGA GGAGATAGAG TCTTTAGAGC AGTTTCATAT GGCAACGGCA GATTCGTTAA TTCGTAAGCA GATGAGCTCG ATTGTGTACA CGGGTCCGAT TAAAGTTCAG CAAATGAAAA ACTTTATCGA TAGCCTGGTA GCATCACTAT CTGCTGCGGT GTCGAATCTC GTCAAGATCC TCAAAGATAC AGCTGCTATT GACCTTGAAA CCCGTCAAAA GTTTGGAGTC TTGGATGTTA CATCTAGGAA GTGGTTAATT AAACCAACGG CCAAGAGTCA TGCATGGGGT GTTGTTGAAA CCCACGCGAG GAAGTATCAT GTGGCGCTTC TGGAATATGA TGAGCAGGGT GTGGTGACAT GCGATGATTG GAGAAGAGTA GCTGTCAGCT CTGAGTCTGT TGTTTATTCC GACATGGCGA AACTCAGAAC TCTGCGCAGA CTGCTTCGAA ACGGAGAACC GCATGTCAGT AGCGCAAAGG TTGTTCTTGT GGACGGAGTT CCGGGCTGTG GAAAAACCAA AGAAATTCTT TCCAGGGTTA ATTTTGATGA AGATCTAATT TTAGTACCTG GGAAGCAAGC TGCTGAAATG ATCAGAAGAC GTGCGAATTC CTCAGGGATT ATTGTGGCCA CGAAGGACAA CGTTAAAACC GTTGATTCTT TCATGATGAA TTTTGGGAAA AGCACACGCT GTCAGTTCAA GAGGTTATTC ATTGATGAAG GGTTGATGTT GCATACTGGT TGTGTTAATT TTCTTGTGGC GATGTCATTG TGCGAAATTG CATATGTTTA CGGAGACACA CAGCAGATTC CATACATCAA TAGAGTTTCA GGATTCCCGT ACCCCGCCCA TTTTGCCAAA TTGGAAGTTG ACGAGGTGGA GACACGCAGA ACTACTCTCC GTTGTCCAGC CGATGTCACA CATTATCTGA ACAGGAGATA TGAGGGCTTT GTCATGAGCA CTTCTTCGGT TAAAAAGTCT GTTTCGCAGG AGATGGTCGG CGGAGCCGCC GTGATCAATC CGATCTCAAA ACCCTTGCAT GGCAAGATCC TGACTTTTAC CCAATCGGAT AAAGAAGCTC TGCTTTCAAG AGGGTATTCA GATGTTCACA CTGTGCATGA AGTGCAAGGC GAGACATACT CTGATGTTTC ACTAGTTAGG CTAACCCCTA CACCAGTCTC CATCATTGCA GGAGACAGCC CGCATGTTTT GGTCGCATTG TCAAGGCACA CCTGTTCGCT CAAGTACTAC ACTGTTGTTA TGGATCCTTT AGTTAGTATC ATTAGAGATC TAGAGAAACT TAGCTCGTAC TTGTTAGATA TGTATAAGGT CGATGCAGGA ACACAATAGC AATTACAGAT TGACTCGGTG TTCAAAGGTT CCAATCTTTT TGTGGCAGCG CCAAAGACTG GTGATATTTC TGATATGCAG TTTTACTATG ATAAGTGTCT CCCAGGCAAC AGCACCATGA TGAATAATTT TGATGCTGTT ACCATGAGGT TGACTGACAT TTCATTGAAT GTCAAAGATT GCATATTGGA TATGTCTAAG TCTGTTGCTG CGCCTAAGGA TCAAATCAAA CCACTAATAC CTATGGTACG AACGGCGGCA GAAATGCCAC GCCAGACTGG ACTATTGGAA AATTTAGTGG CGATGATTAA AAGGAACTTT AACGCACCCG AGTTGTCTGG CATCATTGAT ATTGAAAATA CTGCATCTTT AGTTGTAGAT AAGTTTTTCG ATAGTTATTT GCTTAAAGAA AAAAGAAAAC CAAATAAAAA TGTTTCTTTG TTCAGTAGAG AGTCTCTCAA TAGATGGTTA GAAAAGCAGG AACAGGTAAC AATAGGCCAG CTCGCAGATT TTGATTTTGT AGATTTGCCA GCAGTTGATC AGTACAGACA CATGATCAAA GCACAACCCA AGCAAAAATT GGACACTTCA ATCCAAACGG AGTACCCGGC TTTGCAGACG ATTGTGTACC ATTCGAAAAA GATCAATGCA ATATTTGGCC CGTTGTTTAG TGAGCTTACT AGGCAATTAC TGGACAGTGT TGATTCGAGC AGATTTTTGT TTTTCACAAG AAAGACACCA GCGCAGATTG AGGATTTCTT CGGAGATCTC GACAGTCATG TGCCGATGGA TGTCTTGGAG CTGGATATAT CAAAATACGA CAAATCTCAG AATGAATTCC ACTGTGCAGT AGAATACGAG ATTTGGCGAA GATTGGGTTT TGAAGACTTC TTGGGAGAAG TTTGGAAACA AGGGCATAGA AAGACCACCC TCAAGGATTA TACCGCAGGT ATCAAAACTT GCATCTGGTA TCAAAGAAAG AGTGGGGACG TCACGACATT CATTGGAAAC ACTGTGATCA TTGCTGCATG TTTGGCCTCG ATGCTTCCGA TGGAGAAAAT AATCAAAGGA GCCTTTTGTG GTGACGATAG TCTGCTGTAC TTCCCAAAGG GTTGTGAGTT TCCGGATGTG CAACACTCCG CGAATCTTAT GTGGAATTTT GAAGCAAAAC TGTTTAAAAA ACAGTATGGA TACTTTTGCG GAAGATATGT AATACATCAC GACAGAGGAT GCATTGTGTA TTACGATCCC CTAAAGTTGA TCTCGAAACT TGGCGCTAAA CACATCAAGG ATTGGGAACA CTTGGAGGAG TTCAGAAGGT CTCTTTGTGA TGTTGCTGTT TCGTTGAACA ATTGTGCGTA TTATACACAG TTGGACGACG CTGTATGGGA GGTTCATAAG ACCGCCCCTC CAGGTTCGTT TGTTTATAAA AGTCTGGTGA AGTATTTGTC TGATAAAGTT CTTTTTAGAA GTTTGTTTAT AGATGGCTCT AGTTGTTAA

Products

ProductCP
Descriptionmethyltransferase-helicase
MAYTQTATTS ALLDTVRGNN SLVNDLAKRR LYDTAVEEFN ARDRRPKVNF SKVISEEQTL IATRAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSLTYDIGG NFASHLFKGR AYVHCCMPNL DVRDIMRHEG QKDSIELYLS RLERGGKTVP NFQKEAFDRY AEIPEDAVCH NTFQTCEHQP MQQSGRVYAI ALHSIYDIPA DEFGAALLRK NVHTCYAAFH FSENLLLEDS YVNLDEINAC FSRDGDKLTF SFASESTLNY CHSYSNILKY VCKTYFPASN REVYMKEFLV TRVNTWFCKF SRIDTFLLYK GVAHKGVDSE QFYTAMEDAW HYKKTLAMCN SERILLEDSS TVNYWFPEMR DMVIVPLFDI SLETSKRTRK EVLVSKDFVF TVLNHIRTYQ AKALTYVNVL SFVESIRSRV IINGVTARSE WDVDKSLLQS LSMTFYLHTK LAVLKDDLLI SKFSLGSKTV CQHVWDEISL AFGNAFPSVK ERLLNRKLIR VAGDALEIRV PDLYVTFHDR LVTEYKASVD MPALDIRKKM EETEVMYNAL SELSVLRESD KFDVDVFSQM CQSLEVDAMT AAKVIVAVMS NKSGLTLTFE RPTEANVALA LQDQEKASEG ALVVTSREVE EPSMKGSMAR GELQLAGLAG DHPESSYSRN EEIESLEQFH MATADSLIRK QMSSIVYTGP IKVQQMKNFI DSLVASLSAA VSNLVKILKD TAAIDLETRQ KFGVLDVTSR KWLIKPTAKS HAWGVVETHA RKYHVALLEY DEQGVVTCDD WRRVAVSSES VVYSDMAKLR TLRRLLRNGE PHVSSAKVVL VDGVPGCGKT KEILSRVNFD EDLILVPGKQ AAEMIRRRAN SSGIIVATKD NVKTVDSFMM NFGKSTRCQF KRLFIDEGLM LHTGCVNFLV AMSLCEIAYV YGDTQQIPYI NRVSGFPYPA HFAKLEVDEV ETRRTTLRCP ADVTHYLNRR YEGFVMSTSS VKKSVSQEMV GGAAVINPIS KPLHGKILTF TQSDKEALLS RGYSDVHTVH EVQGETYSDV SLVRLTPTPV SIIAGDSPHV LVALSRHTCS LKYYTVVMDP LVSIIRDLEK LSSYLLDMYK VDAGTQ
ProductCP-ORF2
DescriptionRNA-dependent RNA polymerase
Modifications3417..3419,aa:OTHER
MAYTQTATTS ALLDTVRGNN SLVNDLAKRR LYDTAVEEFN ARDRRPKVNF SKVISEEQTL IATRAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSLTYDIGG NFASHLFKGR AYVHCCMPNL DVRDIMRHEG QKDSIELYLS RLERGGKTVP NFQKEAFDRY AEIPEDAVCH NTFQTCEHQP MQQSGRVYAI ALHSIYDIPA DEFGAALLRK NVHTCYAAFH FSENLLLEDS YVNLDEINAC FSRDGDKLTF SFASESTLNY CHSYSNILKY VCKTYFPASN REVYMKEFLV TRVNTWFCKF SRIDTFLLYK GVAHKGVDSE QFYTAMEDAW HYKKTLAMCN SERILLEDSS TVNYWFPEMR DMVIVPLFDI SLETSKRTRK EVLVSKDFVF TVLNHIRTYQ AKALTYVNVL SFVESIRSRV IINGVTARSE WDVDKSLLQS LSMTFYLHTK LAVLKDDLLI SKFSLGSKTV CQHVWDEISL AFGNAFPSVK ERLLNRKLIR VAGDALEIRV PDLYVTFHDR LVTEYKASVD MPALDIRKKM EETEVMYNAL SELSVLRESD KFDVDVFSQM CQSLEVDAMT AAKVIVAVMS NKSGLTLTFE RPTEANVALA LQDQEKASEG ALVVTSREVE EPSMKGSMAR GELQLAGLAG DHPESSYSRN EEIESLEQFH MATADSLIRK QMSSIVYTGP IKVQQMKNFI DSLVASLSAA VSNLVKILKD TAAIDLETRQ KFGVLDVTSR KWLIKPTAKS HAWGVVETHA RKYHVALLEY DEQGVVTCDD WRRVAVSSES VVYSDMAKLR TLRRLLRNGE PHVSSAKVVL VDGVPGCGKT KEILSRVNFD EDLILVPGKQ AAEMIRRRAN SSGIIVATKD NVKTVDSFMM NFGKSTRCQF KRLFIDEGLM LHTGCVNFLV AMSLCEIAYV YGDTQQIPYI NRVSGFPYPA HFAKLEVDEV ETRRTTLRCP ADVTHYLNRR YEGFVMSTSS VKKSVSQEMV GGAAVINPIS KPLHGKILTF TQSDKEALLS RGYSDVHTVH EVQGETYSDV SLVRLTPTPV SIIAGDSPHV LVALSRHTCS LKYYTVVMDP LVSIIRDLEK LSSYLLDMYK VDAGTQQQLQ IDSVFKGSNL FVAAPKTGDI SDMQFYYDKC LPGNSTMMNN FDAVTMRLTD ISLNVKDCIL DMSKSVAAPK DQIKPLIPMV RTAAEMPRQT GLLENLVAMI KRNFNAPELS GIIDIENTAS LVVDKFFDSY LLKEKRKPNK NVSLFSRESL NRWLEKQEQV TIGQLADFDF VDLPAVDQYR HMIKAQPKQK LDTSIQTEYP ALQTIVYHSK KINAIFGPLF SELTRQLLDS VDSSRFLFFT RKTPAQIEDF FGDLDSHVPM DVLELDISKY DKSQNEFHCA VEYEIWRRLG FEDFLGEVWK QGHRKTTLKD YTAGIKTCIW YQRKSGDVTT FIGNTVIIAA CLASMLPMEK IIKGAFCGDD SLLYFPKGCE FPDVQHSANL MWNFEAKLFK KQYGYFCGRY VIHHDRGCIV YYDPLKLISK LGAKHIKDWE HLEEFRRSLC DVAVSLNNCA YYTQLDDAVW EVHKTAPPGS FVYKSLVKYL SDKVLFRSLF IDGSSC

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