Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200307"

Accession numberr200307 [export]
Locus namehelicase/methyltrans. Readthrough
Recode1 namepol_r_vir_tomv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismTomato mosaic virus [details]

Sequence

GenBank IDsX02144.1
SequenceRNA of 4851 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,349)
Descriptionset ratio of methyl transferase/helicase to RNA-dep RNA pol. ToMV; Accession no. X02144
ATGGCATACA CACAAACAGC CACATCGTCC GCTTTGCTTG AGACCGTCCG AGGTAACAAT ACCTTGGTCA ACGATCTTGC AAAGCGGCGT CTATATGACA CAGCGGTCGA TGAATTTAAT GCTAGGGACC GCAGGCCTAA AGTCAATTTT TCCAAAGTAG TAAGCGAAGA ACAGACGCTT ATTGCAACCA AAGCCTACCC AGAATTCCAA ATTACATTCT ACAACACGCA GAATGCTGTG CATTCCCTTG CAGGCGGTCT CCGATCATTA GAATTGGAAT ATCTGATGAT GCAAATTCCC TACGGATCAT TGACATATGA TATCGGAGGT AATTTTGCAT CTCATCTGTT CAAAGGGCGA GCATACGTTC ACTGCTGTAT GCCGAATCTG GATGTCCGCG ACATAATGCG GCACGAGGGC CAAAAGGACA GTATTGAACT ATACCTTTCT AGGCTCGAGA GGGGCAACAA ACATGTCCCA AACTTCCAAA AGGAAGCTTT CGACAGATAC GCTGAAATGC CAAACGAAGT AGTCTGTCAC GATACTTTCC AAACGTGTAG GCATTCTCAA GAATGTTACA CGGGAAGAGT GTATGCTATT GCTTTGCATA GTATATACGA TATACCTGCC GACGAGTTCG GCGCGGCACT GCTGAGAAAG AATGTACATG TATGTTATGC CGCTTTCCAC TTTTCCGAGA ATTTACTTCT CGAAGATTCA CACGTCAACC TCGACGAGAT CAATGCATGT TTCCAAAGAG ATGGAGACAG GTTGACTTTT TCCTTTGCAT CTGAGAGTAC TCTTAATTAT AGTCATAGTT ATTCTAATAT TCTTAAGTAT GTTTGCAAAA CTTACTTCCC AGCCTCTAAT AGAGAGGTTT ACATGAAGGA GTTTTTAGTA ACTAGAGTTA ATACCTGGTT TTGTAAATTT TCTAGAATAG ATACTTTCTT ATTGTACAAA GGTGTAGCGC ATAAGGGTGT AGATAGTGAG CAGTTTTACA AGGCTATGGA AGACGCATGG CACTACAAAA AGACTCTTGC GATGTGCAAC AGTGAAAGAA TCTTGTTAGA GGATTCTTCA TCAGTTAATT ACTGGTTTCC AAAAATGAGG GATATGGTGA TAGTTCCACT ATTTGACATA TCTCTCGAGA CTAGTAAAAG AACACGCAAA GAGGTCTTAG TTTCAAAGGA CTTTGTTTAT ACAGTGTTAA ATCACATTCG TACGTACCAG GCCAAAGCGC TTACTTACTC CAACGTGTTA TCTTTCGTCG AATCAATTCG TTCGAGAGTG ATCATTAACG GGGTTACTGC TAGGTCTGAG TGGGATGTCG ATAAATCATT ATTACAGTCC TTGTCGATGA CGTTCTTCCT ACACACCAAG CTTGCCGTTC TGAAAGACGA TCTTTTGATT AGCAAGTTTG CACTTGGACC AAAAACTGTC TCACAACATG TGTGGGATGA GATTTCCCTA GCTTTCGGCA ATGCTTTCCC ATCGATCAAG GAAAGATTGA TAAACCGGAA ACTGATCAAA ATTACGGAGA ATGCGTTAGA GATCAGGGTG CCCGATCTTT ATGTCACTTT CCATGATAGG TTAGTTTCTG AGTACAAAAT GTCAGTGGAC ATGCCGGTGC TAGACATTAG GAAAAAGATG GAAGAAACTG AGGAAATGTA CAATGCACTG TCCGAACTGT CTGTACTTAA AAATTCAGAC AAGTTCGATG TTGACGTTTT TTCCCAGATG TGCCAATCTT TAGAAGTCGA TCCAATGACT GCAGCAAAGG TAATAGTAGC AGTTATGAGC AACGAGAGTG GTCTTACTCT CACGTTTGAA CAGCCCACCG AAGCTAATGT TGCGCTAGCA TTGCAAGATT CTGAAAAGGC TTCTGATGGG GCGTTGGTAG TTACCTCAAG AGATGTTGAG GAACCGTCCA TAAAGGGTTC GATGGCCCGT GGTGAGTTAC AATTGGCCGG ATTATCTGGC GACGTTCCTG AATCTTCATA CACTAGGAGC GAGGAGATTG AGTCTCTCGA GCAGTTTCAT ATGGCAACAG CTAGTTCGTT AATTCATAAG CAGATGTGTT CGATCGTGTA CACGGGCCCT CTTAAAGTTC AACAAATGAA AAACTTTATA GACAGCCTGG TAGCCTCGCT CTCTGCTGCG GTGTCGAATC TAGTGAAGAT CCTAAAAGAT ACAGCCGCGA TTGACCTTGA AACTCGTCAA AAGTTCGGAG TTCTGGATGT TGCTTCGAAA AGGTGGCTAG TTAAACCATC CGCAAAGAAC CATGCATGGG GGGTTGTTGA GACTCATGCG AGGAAATATC ACGTCGCATT ACTGGAGCAC GATGAATTTG GCATTATTAC GTGCGATAAC TGGCGACGGG TGGCTGTGAG TTCTGAGTCG GTAGTATATT CTGATATGGC TAAACTCAGG ACTCTGAGAA GATTGCTCAA AGATGGAGAA CCACACGTTA GTTCAGCAAA GGTGGTTTTG GTGGATGGCG TTCCAGGGTG CGGGAAGACA AAGGAAATTC TTTCGAGAGT TAATTTCGAA GAAGATCTAA TTCTTGTCCC TGGTCGTCAA GCTGCCGAGA TGATCAGAAG AAGAGCTAAT GCGTCGGGCA TAATAGTGGC TACAAAGGAT AATGTGCGCA CCGTCGATTC ATTTTTGATG AATTACGGGA AAGGGGCACG CTGTCAGTTC AAAAGATTGT TCATAGACGA AGGTTTGATG CTGCATACTG GTTGTGTGAA TTTTTTGGTT GAAATGTCTC TGTGCGATAT TGCATATGTT TATGGAGACA CCCAACAGAT TCCGTACATC AACAGAGTAA CTGGTTTCCC GTACCCTGCA CACTTTGCAA AATTGGAGGT CGACGAAGTC GAAACAAGAA GAACTACTCT TCGTTGTCCG GCTGATGTCA CACACTTCCT AAATCAAAGG TATGAAGGAC ACGTAATGTG CACGTCTTCT GAAAAGAAAT CAGTTTCCCA GGAAATGGTT AGTGGGGCTG CGTCTATCAA TCCTGTGTCC AAGCCGCTTA AGGGAAAAAT TTTGACTTTC ACACAGTCTG ACAAGGAGGC CCTTCTCTCA AGGGGCTACG CAGATGTCCA TACTGTACAT GAGGTACAAG GTGAGACTTA TGCAGACGTA TCGTTAGTTC GACTAACACC TACGCCTGTA TCTATCATCG CAAGAGACAG TCCGCATGTT CTGGTCTCGT TGTCAAGACA CACAAAATCC CTAAAGTACT ACACCGTTGT GATGGATCCT TTAGTTAGTA TCATTAGAGA TTTAGAACGG GTTAGTAGTT ACTTATTAGA CATGTACAAA GTAGATGCAG GTACTCAATA GCAATTACAG GTCGACTCTG TGTTTAAAAA TTTCAATCTT TTTGTAGCAG CTCCAAAGAC TGGAGATATA TCTGATATGC AATTTTACTA TGATAAGTGT CTTCCTGGGA ACAGCACGTT GTTGAACAAC TACGACGCTG TTACCATGAA ATTGACTGAC ATTTCTCTGA ATGTCAAAGA TTGCATATTA GATATGTCTA AGTCTGTAGC TGCTCCGAAA GATGTCAAAC CAACTTTAAT ACCGATGGTA CGAACGGCGG CAGAAATGCC TCGCCAGACT GGACTGTTGG AAAATCTAGT TGCGATGATT AAAAGAAATT TTAATTCACC AGAGTTGTCC GGAGTAGTTG ATATTGAAAA TACTGCATCT TTAGTGGTAG ATAAGTTTTT TGATAGTTAT TTACTTAAGG AAAAAAGAAA ACCAAACAAA AATTTTTCAC TGTTTAGTAG AGAGTCTCTC AATAGGTGGA TAGCAAAGCA AGAACAAGTC ACAATTGGTC AGTTGGCCGA TTTTGATTTT GTGGATCTTC CAGCCGTTGA TCAGTACAGG CATATGATTA AAGCGCAACC GAAGCAGAAA CTGGATCTGT CAATTCAGAC AGAATATCCA GCGTTGCAAA CGATTGTGTA TCATTCAAAG AAAATCAACG CAATATTTGG TCCTCTTTTC AGTGAGCTTA CAAGGCAATT ACTTGACAGT ATTGACTCAA GCAGATTCTT GTTCTTTACG AGAAAGACAC CGGCTCAGAT CGAAGATTTC TTCGGAGATC TAGACAGTCA TGTCCCAATG GACGTACTTG AGTTGGATGT TTCGAAGTAT GATAAGTCTC AAAACGAGTT TCATTGTGCT GTTGAGTACG AAATCTGGAG GAGACTGGGT CTGGAGGATT TCTTGGCAGA AGTGTGGAAA CAAGGGCATA GAAAAACCAC TCTGAAAGAT TACACTGCTG GTATAAAAAC GTGTTTATGG TACCAGAGAA AGAGTGGTGA TGTTACAACT TTTATCGGTA ATACCGTCAT CATTGCTTCG TGTCTAGCAT CAATGCTCCC GATGGAAAAA TTGATAAAAG GAGCCTTCTG CGGAGATGAC AGTTTGTTGT ACTTTCCTAA GGGTTGTGAG TATCCCGATA TACAACAAGC TGCTAATCTA ATGTGGAATT TTGAGGCCAA ACTGTTCAAG AAGCAATATG GGTACTTCTG CGGGAGGTAC GTGATTCATC ACGATAGAGG TTGCATAGTA TACTACGACC CTTTGAAGCT GATTTCGAAA CTTGGTGCTA AACACATCAA GGATTGGGAT CATTTGGAGG AGTTCAGAAG ATCCCTCTGT GATGTTGCTG AGTCGTTGAA CAATTGCGCG TATTACACAC AATTGGACGA CGCTGTTGGG GAGGTTCATA AAACCGCCCC ACCTGGTTCG TTTGTTTATA AGAGTTTAGT TAAGTATTTG TCAGATAAAG TTTTGTTTAG AAGTTTATTT CTTGATGGCT CTAGTTGTTA A

Products

ProductCP
Descriptionmethyltransferase-helicase
MAYTQTATSS ALLETVRGNN TLVNDLAKRR LYDTAVDEFN ARDRRPKVNF SKVVSEEQTL IATKAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSLTYDIGG NFASHLFKGR AYVHCCMPNL DVRDIMRHEG QKDSIELYLS RLERGNKHVP NFQKEAFDRY AEMPNEVVCH DTFQTCRHSQ ECYTGRVYAI ALHSIYDIPA DEFGAALLRK NVHVCYAAFH FSENLLLEDS HVNLDEINAC FQRDGDRLTF SFASESTLNY SHSYSNILKY VCKTYFPASN REVYMKEFLV TRVNTWFCKF SRIDTFLLYK GVAHKGVDSE QFYKAMEDAW HYKKTLAMCN SERILLEDSS SVNYWFPKMR DMVIVPLFDI SLETSKRTRK EVLVSKDFVY TVLNHIRTYQ AKALTYSNVL SFVESIRSRV IINGVTARSE WDVDKSLLQS LSMTFFLHTK LAVLKDDLLI SKFALGPKTV SQHVWDEISL AFGNAFPSIK ERLINRKLIK ITENALEIRV PDLYVTFHDR LVSEYKMSVD MPVLDIRKKM EETEEMYNAL SELSVLKNSD KFDVDVFSQM CQSLEVDPMT AAKVIVAVMS NESGLTLTFE QPTEANVALA LQDSEKASDG ALVVTSRDVE EPSIKGSMAR GELQLAGLSG DVPESSYTRS EEIESLEQFH MATASSLIHK QMCSIVYTGP LKVQQMKNFI DSLVASLSAA VSNLVKILKD TAAIDLETRQ KFGVLDVASK RWLVKPSAKN HAWGVVETHA RKYHVALLEH DEFGIITCDN WRRVAVSSES VVYSDMAKLR TLRRLLKDGE PHVSSAKVVL VDGVPGCGKT KEILSRVNFE EDLILVPGRQ AAEMIRRRAN ASGIIVATKD NVRTVDSFLM NYGKGARCQF KRLFIDEGLM LHTGCVNFLV EMSLCDIAYV YGDTQQIPYI NRVTGFPYPA HFAKLEVDEV ETRRTTLRCP ADVTHFLNQR YEGHVMCTSS EKKSVSQEMV SGAASINPVS KPLKGKILTF TQSDKEALLS RGYADVHTVH EVQGETYADV SLVRLTPTPV SIIARDSPHV LVSLSRHTKS LKYYTVVMDP LVSIIRDLER VSSYLLDMYK VDAGTQ
ProductCP-ORF2
Descriptionmethyl transferase, helicase, RNA-dependent RNA polymerase
Modifications3349..3351,aa:OTHER
MAYTQTATSS ALLETVRGNN TLVNDLAKRR LYDTAVDEFN ARDRRPKVNF SKVVSEEQTL IATKAYPEFQ ITFYNTQNAV HSLAGGLRSL ELEYLMMQIP YGSLTYDIGG NFASHLFKGR AYVHCCMPNL DVRDIMRHEG QKDSIELYLS RLERGNKHVP NFQKEAFDRY AEMPNEVVCH DTFQTCRHSQ ECYTGRVYAI ALHSIYDIPA DEFGAALLRK NVHVCYAAFH FSENLLLEDS HVNLDEINAC FQRDGDRLTF SFASESTLNY SHSYSNILKY VCKTYFPASN REVYMKEFLV TRVNTWFCKF SRIDTFLLYK GVAHKGVDSE QFYKAMEDAW HYKKTLAMCN SERILLEDSS SVNYWFPKMR DMVIVPLFDI SLETSKRTRK EVLVSKDFVY TVLNHIRTYQ AKALTYSNVL SFVESIRSRV IINGVTARSE WDVDKSLLQS LSMTFFLHTK LAVLKDDLLI SKFALGPKTV SQHVWDEISL AFGNAFPSIK ERLINRKLIK ITENALEIRV PDLYVTFHDR LVSEYKMSVD MPVLDIRKKM EETEEMYNAL SELSVLKNSD KFDVDVFSQM CQSLEVDPMT AAKVIVAVMS NESGLTLTFE QPTEANVALA LQDSEKASDG ALVVTSRDVE EPSIKGSMAR GELQLAGLSG DVPESSYTRS EEIESLEQFH MATASSLIHK QMCSIVYTGP LKVQQMKNFI DSLVASLSAA VSNLVKILKD TAAIDLETRQ KFGVLDVASK RWLVKPSAKN HAWGVVETHA RKYHVALLEH DEFGIITCDN WRRVAVSSES VVYSDMAKLR TLRRLLKDGE PHVSSAKVVL VDGVPGCGKT KEILSRVNFE EDLILVPGRQ AAEMIRRRAN ASGIIVATKD NVRTVDSFLM NYGKGARCQF KRLFIDEGLM LHTGCVNFLV EMSLCDIAYV YGDTQQIPYI NRVTGFPYPA HFAKLEVDEV ETRRTTLRCP ADVTHFLNQR YEGHVMCTSS EKKSVSQEMV SGAASINPVS KPLKGKILTF TQSDKEALLS RGYADVHTVH EVQGETYADV SLVRLTPTPV SIIARDSPHV LVSLSRHTKS LKYYTVVMDP LVSIIRDLER VSSYLLDMYK VDAGTQQQLQ VDSVFKNFNL FVAAPKTGDI SDMQFYYDKC LPGNSTLLNN YDAVTMKLTD ISLNVKDCIL DMSKSVAAPK DVKPTLIPMV RTAAEMPRQT GLLENLVAMI KRNFNSPELS GVVDIENTAS LVVDKFFDSY LLKEKRKPNK NFSLFSRESL NRWIAKQEQV TIGQLADFDF VDLPAVDQYR HMIKAQPKQK LDLSIQTEYP ALQTIVYHSK KINAIFGPLF SELTRQLLDS IDSSRFLFFT RKTPAQIEDF FGDLDSHVPM DVLELDVSKY DKSQNEFHCA VEYEIWRRLG LEDFLAEVWK QGHRKTTLKD YTAGIKTCLW YQRKSGDVTT FIGNTVIIAS CLASMLPMEK LIKGAFCGDD SLLYFPKGCE YPDIQQAANL MWNFEAKLFK KQYGYFCGRY VIHHDRGCIV YYDPLKLISK LGAKHIKDWD HLEEFRRSLC DVAESLNNCA YYTQLDDAVG EVHKTAPPGS FVYKSLVKYL SDKVLFRSLF LDGSSC

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