Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200308"

Accession numberr200308 [export]
Locus namehelicase protein readthrough
Recode1 namepol_r_vir_trv2
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismTobacco rattle virus [details]
AcronymTRV

Sequence

GenBank IDsAF166084.1
SequenceRNA of 5124 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,562)
Descriptionset ratio of helicase/RdRp proteins. TRV-PpK20; Accession no. AF166084
ATGGCGAACG GTAACTTCAA GTTGTCTCAA TTGCTCAATG TGGACGAGAT GTCTGCTGAG CAGAGGAGTC ATTTCTTTGA CTTGATGCTG ACTAAACCTG ATTGTGAGAT CGGGCAAATG ATGCAAAGAG TTGTTGTTGA TAAAGTCGAT GACATGATTA GAGAAAGAAA GACTAAAGAT CCAGTGATTG TTCATGAAGT TCTTTCTCAG AAGGAACAGA ACAAGTTAAT GGAAATTTAT CCTGAATTCA ATATCGTGTT TAAAGACGAC AAAAACATGG TTCATGGGTT TGCGGCTGCT GAGCGAAAAC TACAAGCTTT ATTGCTTTTA GATAGAGTTC CTGCTCTGCA AGAGGTGGAT GACATCGGTG GTCAATGGTC GTTTTGGGTA ACTAGAGGTG AGAAAAGGAT TCATTCCTGT TGTCCAAATC TAGATATTCG GGATGATCAG AGAGAAATTT CTCGACAGAT ATTTCTTACT GCTATTGGTG ATCAAGCTAG AAGTGGTAAG AGACAGATGT CGGAGAATGA GCTGTGGATG TATGACCAAT TTCGTAAAAA TATTGCTGCG CCTAACGCGG TTAGGTGCAA TAATACATAT CACGGTTGTA CATGTAGGGG TTTTTCTGAT GGTAAGAAGA AAGGCGCGCA GTATGCGATA GCTCTTCACA GCCTGTATGA CTTCAAGTTG AAAGACTTGA TGGCTACTAT GGTTGAGAAG AAAACTAAAG TGGGTCATGC TGCTATGCTT TTTGCTCCTG AAAGTATGTT AGTGGACGAA GGTCCATTAC CTTCTGTTGA CGGTTACTAC ATGAAGAAGA ACGGGAAGAT CTATTTCGGT TTTGAGAAAG ATCCTTCCTT TTCTTACATT CATGACTGGG AAGAGTACAA GAAGTATCTA CTGGGGAAGC CAGTGAGTTA CCAAGGGAAT GTGTTCTACT TCGAACCGTG GCAGGTGAGA GGAGACACGA TGCTTTTTTC GATCTACAGG ATAGCTGGAG TTCCGAGGAG GTCTCTATCA TCGCAAGAGT ACTACCGAAG AATATATATC AGTAGATGGG AAAACATGGT TGTTGTCCCA ATTTTCGATC TGGTCGAATC AACGCGAGAG TTGGTCAAGA AAGACCTGTT TGTAGAGAAA CAATTCATGG ACAAGTGTTT GGATTACATA GCTAGGTTAT CTGACCAGCA GCTGACCATA AGCAATGTTA AATCATATTT GAGTTCAAAT AATTGGGTCT TATTCATAAA CGGGGCGGCC GTGAAGAACA AGCAAAGTGT AGATTCTCGA GATTTACAGT TGTTGGCTCA AACTTTGCTA GTGAAGGAAC AAGTGGCGAG ACCTGTCATG AGGGAGTTGC GTGAAGCAAT TCTGACTGAG ACGAAACCTA TCACGTCATT GACTGATGTG CTGGGTTTAA TATCAAGAAA AATGTGGAAG CAGTTTGCTA ACAAGATCGC AGTCGGCGGA TTCGTTGGCA TGGTTGGTAC TCTAATTGGA TTCTATCCAA AGAAGGTACT AACCTGGGCG AAGGACACAC CAAATGGTCC AGAACTATGT TACGAGAACT CGCACAAAAC CAAGGTGATA GTATTTCTGA GTGTTGTGTA TGCCATTGGA GGAATCACGC TTATGCGTCG AGACATCCGA GATGGACTGG TGAAAAAACT ATGTGATATG TTTGATATCA AACGGGGGGC CCATGTCTTA GACGTTGAGA ATCCGTGCCG CTATTATGAT ATCAACGATT TCTTTAGCAG TCTGTATTCG GCATCTGAGT CCGGTGAGAC CGTTTTACCA GATTTATCCG AGGTAAAAGC CAAGTCTGAT AAGTTATTGC AGCAGAAGAA AGAAATCGCT GACGAGTTTC TAAGTGCAAA ATTCTCTAAC TATTCTGGCA GTTCGGTGAG AACTTCTCCA CCATCGGTGG TCGGTTCATC TCGAAGCGGA CTGGGTCTGT TGTTGGAAGA CAGTAACGTG CTGACCCAAG CTAGAGTTGG AGTTTCAAGA AAGGTAGCCG ATGAGGAGAT CATGGAGCAG TTTCTGAGTG GTCTTATTGA CACTGAAGCA GAAATTGACG AGGTTGTTCC AGCCTTTTCA GCTGAATGTG AAAGAGGGGA AACAAGCGGT ACAAAGGTGT TGTGTAACCT TTTAACGCCA CCAGGATTTG AGAACGTGTT GCCAGCTGTC AAACCTTTGG TCAGCAAAGG AAAAACGGTC AAACGTGTCG ATTACTTCCA AGTGATGGGA GGTGAGAGAT TACCAAAAAG GCCGGTTGTC AGTGGAGACG ATTCTGTGGA CGCTAGAAGA GAGTTTCTGT ACTACTTAGA TGCGGAGAGA GTCGCTCAAA ATGATGAAAT TATGTCTCTG TATCGTGACT ATTCGAGAGG AGTTATTCGA ACTGGAGGTC AGAATTACCC GCACGGACTG GGAGTGTGGG ATGTGGAGAT GAAGAACTGG TGCATACGTC CAGTGGTCAC TGAACATGCT TATGTGTCCA ACCCAGACAA ACGTATGGAT GATTGGTCGG GATACTTAGA AGTGGCTGTT TGGGAACGAG GTATGTTGGT CAACGACTTC GCGGTCGAAA GGATGAGTGA TTATGTCATA GTTTGCGATC AGACGTATCT TTGCAATAAC AGGTTGATCT TGGACAATTT AAGTGCCCTG GATCTAGGAC CAGTTAACTG TTCTTTTGAA TTAGTTGACG GTGTACCTGG TTGTGGTAAG TCGACAATGA TTGTCAACTC AGCTAATCCT TGTGTCGATG TGGTTCTCTC TACTGGGAGA GCAGCAACCG ACGACTTGAT CGAGAGATTC GCGAGCAAAG GTTTTCCATG CAAATTGAAA AGGAGAGTGA AGACGGTTGA TTCTTTTTTG ATGCATTGTG TTGATGGTTC TTTAACCGGA GACGTGTTGC ATTTCGATGA AGCTCTCATG GCCCATGCTG GTATGGTGTA CTTTTGCGCT CAGATAGCTG GTGCTAAACG ATGTATCTGT CAAGGAGATC AGAATCAAAT TTCTTTCAAG CCTAGGGTAT CTCAAGTTGA TTTGAGGTTT TCTAGTCTGG TCGGAAAGTT TGACATTGTT ACAGAAAAAA GAGAAACTTA CAGAAGTCCA GCAGATGTGG CTGCCGTATT GAACAAGTAC TATACTGGAG ATGTCAGAAC ACATAACGCG ACTGCTAATT CGATGACGGT GAGGAAGATT GTGTCTAAAG AACAGGTTTC TTTGAAGCCT GGTGCTCAGT ACATAACTTT CCTTCAGTCT GAGAAGAAGG AGTTGGTAAA TTTGTTGGCA TTGAGGAAAG TGGCAGCTAA AGTGAGTACA GTACACGAGT CGCAAGGAGA GACATTCAAA GATGTAGTCC TAGTCAGGAC GAAACCTACG GATGACTCAA TCGCTAGAGG TCGGGAGTAC TTAATCGTGG CGTTGTCGCG TCACACACAA TCACTTGTGT ATGAAACTGT GAAAGAGGAC GATGTAAGCA AAGAGATCAG GGAAAGTGCC GCGCTTACGA AGGCGGCTTT GGCAAGATTT TTTGTTACTG AGACCGTCTT ATGACGGTTT CGGTCTAGGT TTGATGTTTT TAGACATCAT GAAGGGCCTT GCGCCGTTCC AGATTCAGGT ACGATTACGG ACTTGGAGAT GTGGTACGAC GCTTTGTTTC CGGGAAATTC GTTAAGAGAC TCAAGCCTAG ACGGGTATTT GGTGGCAACG ACTGATTGCA ATTTGCGATT AGACAATGTT ACGATCAAAA GTGGAAACTG GAAAGACAAG TTTGCTGAAA AAGAAACGTT TCTGAAACCG GTTATTCGTA CTGCTATGCC TGACAAAAGG AAGACTACTC AGTTGGAGAG TTTGTTAGCG TTGCAGAAAA GGAACCAAGC GGCACCCGAT CTACAAGAAA ATGTGCACGC AACAGTTCTA ATCGAAGAGA CGATGAAGAA GTTGAAATCT GTTGTCTACG ATGTGGGAAA AATTCGGGCT GATCCTATTG TCAATAGAGC TCAAATGGAG AGATGGTGGA GAAATCAAAG CACAGCGGTA CAGGCTAAGG TAGTAGCAGA TGTGAGAGAG TTACATGAAA TAGACTATTC GTCTTACATG TTTATGATCA AATCTGACGT GAAACCTAAG ACTGATTTAA CACCGCAATT TGAATACTCC GCTCTACAGA CTGTTGTGTA TCACGAGAAG TTGATCAACT CGTTGTTCGG TCCAATTTTC AAAGAAATTA ATGAACGCAA GTTGGATGCT ATGCAACCAC ATTTTGTGTT CAACACGAGA ATGACATCGA GTGATTTAAA CGATCGAGTG AAGTTCTTAA ATACGGAAGC GGCTTACGAC TTTGTTGAGA TAGACATGTC TAAATTCGAC AAGTCGGCAA ATCGCTTCCA TTTACAACTG CAGCTGGAGA TTTACAGGTT ATTTGGGCTA GATGAGTGGG CGGCCTTCCT TTGGGAGGTG TCGCACACTC AAACTACTGT GAGAGATATT CAAAATGGTA TGATGGCGCA TATTTGGTAC CAACAAAAGA GTGGAGATGC TGATACTTAT AATGCAAATT CAGATAGAAC ACTGTGTGCA CTCTTGTCTG AATTACCATT GGAGAAAGCA GTCATGGTTA CATATGGAGG AGATGACTCA CTGATTGCGT TTCCTAGAGG AACGCAGTTT GTTGATCCGT GTCCAAAGTT GGCTACTAAG TGGAATTTCG AGTGCAAGAT TTTTAAGTAC GATGTCCCAA TGTTTTGTGG GAAGTTCTTG CTTAAGACGT CATCGTGTTA CGAGTTCGTG CCAGATCCGG TAAAAGTTCT GACGAAGTTG GGGAAAAAGA GTATAAAGGA TGTGCAACAT TTAGCCGAGA TCTACATCTC GCTGAATGAT TCCAATAGAG CTCTTGGGAA CTACATGGTG GTATCCAAAC TGTCCGAGTC TGTTTCAGAC CGGTATTTGT ACAAAGGTGA TTCTGTTCAT GCGCTTTGTG CGCTATGGAA GCATATTAAG AGTTTTACAG CTCTGTGTAC ATTATTCCGA GACGAAAACG ATAAGGAATT GAACCCGGCT AAGGTTGATT GGAAGAAGGC ACAGAGAGCT GTGTCAAACT TTTACGACTG GTAA

Products

ProductCP
DescriptionHelicase
MANGNFKLSQ LLNVDEMSAE QRSHFFDLML TKPDCEIGQM MQRVVVDKVD DMIRERKTKD PVIVHEVLSQ KEQNKLMEIY PEFNIVFKDD KNMVHGFAAA ERKLQALLLL DRVPALQEVD DIGGQWSFWV TRGEKRIHSC CPNLDIRDDQ REISRQIFLT AIGDQARSGK RQMSENELWM YDQFRKNIAA PNAVRCNNTY HGCTCRGFSD GKKKGAQYAI ALHSLYDFKL KDLMATMVEK KTKVGHAAML FAPESMLVDE GPLPSVDGYY MKKNGKIYFG FEKDPSFSYI HDWEEYKKYL LGKPVSYQGN VFYFEPWQVR GDTMLFSIYR IAGVPRRSLS SQEYYRRIYI SRWENMVVVP IFDLVESTRE LVKKDLFVEK QFMDKCLDYI ARLSDQQLTI SNVKSYLSSN NWVLFINGAA VKNKQSVDSR DLQLLAQTLL VKEQVARPVM RELREAILTE TKPITSLTDV LGLISRKMWK QFANKIAVGG FVGMVGTLIG FYPKKVLTWA KDTPNGPELC YENSHKTKVI VFLSVVYAIG GITLMRRDIR DGLVKKLCDM FDIKRGAHVL DVENPCRYYD INDFFSSLYS ASESGETVLP DLSEVKAKSD KLLQQKKEIA DEFLSAKFSN YSGSSVRTSP PSVVGSSRSG LGLLLEDSNV LTQARVGVSR KVADEEIMEQ FLSGLIDTEA EIDEVVPAFS AECERGETSG TKVLCNLLTP PGFENVLPAV KPLVSKGKTV KRVDYFQVMG GERLPKRPVV SGDDSVDARR EFLYYLDAER VAQNDEIMSL YRDYSRGVIR TGGQNYPHGL GVWDVEMKNW CIRPVVTEHA YVSNPDKRMD DWSGYLEVAV WERGMLVNDF AVERMSDYVI VCDQTYLCNN RLILDNLSAL DLGPVNCSFE LVDGVPGCGK STMIVNSANP CVDVVLSTGR AATDDLIERF ASKGFPCKLK RRVKTVDSFL MHCVDGSLTG DVLHFDEALM AHAGMVYFCA QIAGAKRCIC QGDQNQISFK PRVSQVDLRF SSLVGKFDIV TEKRETYRSP ADVAAVLNKY YTGDVRTHNA TANSMTVRKI VSKEQVSLKP GAQYITFLQS EKKELVNLLA LRKVAAKVST VHESQGETFK DVVLVRTKPT DDSIARGREY LIVALSRHTQ SLVYETVKED DVSKEIRESA ALTKAALARF FVTETVL
ProductCP-ORF2
DescriptionHelicase/RNA-dependent RNA polymerase
Modifications3562..3564,aa:OTHER
MANGNFKLSQ LLNVDEMSAE QRSHFFDLML TKPDCEIGQM MQRVVVDKVD DMIRERKTKD PVIVHEVLSQ KEQNKLMEIY PEFNIVFKDD KNMVHGFAAA ERKLQALLLL DRVPALQEVD DIGGQWSFWV TRGEKRIHSC CPNLDIRDDQ REISRQIFLT AIGDQARSGK RQMSENELWM YDQFRKNIAA PNAVRCNNTY HGCTCRGFSD GKKKGAQYAI ALHSLYDFKL KDLMATMVEK KTKVGHAAML FAPESMLVDE GPLPSVDGYY MKKNGKIYFG FEKDPSFSYI HDWEEYKKYL LGKPVSYQGN VFYFEPWQVR GDTMLFSIYR IAGVPRRSLS SQEYYRRIYI SRWENMVVVP IFDLVESTRE LVKKDLFVEK QFMDKCLDYI ARLSDQQLTI SNVKSYLSSN NWVLFINGAA VKNKQSVDSR DLQLLAQTLL VKEQVARPVM RELREAILTE TKPITSLTDV LGLISRKMWK QFANKIAVGG FVGMVGTLIG FYPKKVLTWA KDTPNGPELC YENSHKTKVI VFLSVVYAIG GITLMRRDIR DGLVKKLCDM FDIKRGAHVL DVENPCRYYD INDFFSSLYS ASESGETVLP DLSEVKAKSD KLLQQKKEIA DEFLSAKFSN YSGSSVRTSP PSVVGSSRSG LGLLLEDSNV LTQARVGVSR KVADEEIMEQ FLSGLIDTEA EIDEVVPAFS AECERGETSG TKVLCNLLTP PGFENVLPAV KPLVSKGKTV KRVDYFQVMG GERLPKRPVV SGDDSVDARR EFLYYLDAER VAQNDEIMSL YRDYSRGVIR TGGQNYPHGL GVWDVEMKNW CIRPVVTEHA YVSNPDKRMD DWSGYLEVAV WERGMLVNDF AVERMSDYVI VCDQTYLCNN RLILDNLSAL DLGPVNCSFE LVDGVPGCGK STMIVNSANP CVDVVLSTGR AATDDLIERF ASKGFPCKLK RRVKTVDSFL MHCVDGSLTG DVLHFDEALM AHAGMVYFCA QIAGAKRCIC QGDQNQISFK PRVSQVDLRF SSLVGKFDIV TEKRETYRSP ADVAAVLNKY YTGDVRTHNA TANSMTVRKI VSKEQVSLKP GAQYITFLQS EKKELVNLLA LRKVAAKVST VHESQGETFK DVVLVRTKPT DDSIARGREY LIVALSRHTQ SLVYETVKED DVSKEIRESA ALTKAALARF FVTETVLQRF RSRFDVFRHH EGPCAVPDSG TITDLEMWYD ALFPGNSLRD SSLDGYLVAT TDCNLRLDNV TIKSGNWKDK FAEKETFLKP VIRTAMPDKR KTTQLESLLA LQKRNQAAPD LQENVHATVL IEETMKKLKS VVYDVGKIRA DPIVNRAQME RWWRNQSTAV QAKVVADVRE LHEIDYSSYM FMIKSDVKPK TDLTPQFEYS ALQTVVYHEK LINSLFGPIF KEINERKLDA MQPHFVFNTR MTSSDLNDRV KFLNTEAAYD FVEIDMSKFD KSANRFHLQL QLEIYRLFGL DEWAAFLWEV SHTQTTVRDI QNGMMAHIWY QQKSGDADTY NANSDRTLCA LLSELPLEKA VMVTYGGDDS LIAFPRGTQF VDPCPKLATK WNFECKIFKY DVPMFCGKFL LKTSSCYEFV PDPVKVLTKL GKKSIKDVQH LAEIYISLND SNRALGNYMV VSKLSESVSD RYLYKGDSVH ALCALWKHIK SFTALCTLFR DENDKELNPA KVDWKKAQRA VSNFYDW

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