Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200309"

Accession numberr200309 [export]
Locus namepol
Recode1 namepol_r_vir_tvcv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismTurnip vein-clearing virus [details]
AcronymTVCV

Sequence

GenBank IDsNC_001873
Sequencess-RNA of 6311 nucleotides [sequence]
OrganisationSequence (1)

Recoding event

Event typeReadthrough (position: 3,389)
Descriptionproduction of fusion protein and set the ratio between two protein products.
GTTTAGTTTT ATTGCAACAA CAACAACAAA TTACAATAAC AACAAACAAA ATACAAACAA CAACAACATG GCACAATTTC AACAAACAAT TGACATGCAA ACTCTCCAAG CCGCTGCGGG ACGCAACAGC TTGGTGAATG ATTTGGCATC TCGTCGCGTT TACGATAATG CAGTCGAGGA GCTGAATGCT CGTTCCAGAC GTCCCAAGGT TCATTTCTCC AAGGCAGTGT CTACGGAACA GACACTGATT GCAACAAACG CATATCCGGA GTTCGAGATT TCCTTTACTC ATACGCAATC CGCTGTGCAC TCCTTGGCCG GAGGCCTTCG GTCACTTGAG TTGGAGTATC TCATGATGCA AGTTCCGTTC GGTTCTCTGA CGTACGACAT CGGCGGTAAC TTTTCCGCGC ACCTTTTCAA AGGGCGCGAT TACGTTCACT GCTGCATGCC TAATCTGGAT GTACGTGACA TTGCTCGCCA TGAAGGACAC AAGGAAGCTA TTTACAGTTA TGTGAATCGT TTGAAAAGGC AGCAGCGTCC TGTGCCTGAA TACCAGAGGG CAGCTTTCAA CAACTACGCT GAGAACCCGC ACTTCGTCCA TTGCGACAAA CCTTTCCAAC AGTGTGAATT GACGACAGCG TATGGCACTG ACACCTACGC TGTAGCTCTC CATAGCATTT ATGATATCCC TGTTGAGGAG TTCGGTTCTG CGCTACTCAG GAAGAATGTG AAAACTTGTT TCGCGGCCTT TCATTTCCAT GAGAATATGC TTCTAGATTG TGATACAGTC ACACTCGATG AGATTGGAGC TACTTTTCAG AAGTCCGGTG ATAATTTAAG TTTTTTCTTT CATAATGAGA GCACTCTCAA TTACACCCAC AGTTTTAGTA ATATAATTAA GTATGTGTGT AAAACGTTCT TTCCTGCTAG TCAACGGTTT GTGTATCATA AGGAGTTTTT AGTTACTAGA GTCAACACTT GGTACTGTAA GTTTACGAGA GTGGATACTT TTACTCTTTT CCGTGGTGTG TACCATAATA ATGTGGATTG CGAAGAGTTT TACAAGGCTA TGGACGATGC GTGGCACTAC AAAAAGACGT TAGCAATGCT TAATGCCGAG AGGACCATCT TCAAGGATAA CGCTGCGTTA AACTTTTGGT TCCCGAAAGT GAGAGACATG GTTATCGTCC CTCTCTTTGA CGCTTCTATC ACAACTGGTA GGATGTCTAG GAGAGAGATT ATGGTGAACA AGGATTTCGT TTATACGGTC CTAAATCACA TAAAAACGTA TCAAGCTAAG GCTTTAACTT ACGCAAATGT TCTGTCCTTT GTGGAGTCTA TTAGGTCTAG AGTGATAATT AACGGTGTCA CTGCCAGGTC TGAATGGGAC ACAGACAAGG CAATTCTAGG TCCATTAGCA ATGACATTTT TCCTTATAAC AAAGTTGGGT CATGTGCAGG ATGAAATAAT CCTGAAAAAG TTCCAGAAGT TCGACAGAAC CACCAATGAG CTGATTTGGA CAAGTCTCTG CGATGCCCTG ATGGGGGTTA TTCCCTCGGT CAAGGAGACG CTTGTGCGCG GTGGTTTTGT GAAAGTAGCA GAACAAGCCT TAGAGATAAA GGTTCCCGAG CTATACTGTA CCTTTGCCGA CAGATTGGTA CTACAGTACA AGAAGGCGGA GGAGTTCCAA TCGTGTGATC TTTCCAAACC TCTAGAAGAG TCAGAGAAGT ACTACAACGC ATTATCCGAG CTATCAGTGC TTGAGAATCT CGACTCTTTT GACTTAGAGG CGTTTAAGAC TTTATGTCAG CAGAAGAATG TGGACCCGGA TATGGCAGCA AAGGTGGTCG TAGCAATCAT GAAGTCAGAA TTGACGTTGC CTTTCAAGAA ACCTACAGAA GAGGAAATCT CGGAGTCGCT AAAACCAGGA GAGGGGTCGT GTGCAGAGCA TAAGGAAGTG TTGAGCTTAC AAAATGATGC TCCGTTCCCG TGTGTGAAAA ATCTAGTTGA AGGTTCCGTG CCGGCGTATG GAATGTGTCC TAAGGGTGGT GGTTTCGACA AATTGGATGT GGACATTGCT GATTTCCATC TCAAGAGTGT AGATGCAGTT AAAAAGGGAA CTATGATGTC TGCGGTGTAC ACAGGGTCTA TCAAAGTTCA ACAAATGAAG AACTACATAG ATTACTTAAG TGCGTCGCTG GCAGCTACAG TCTCAAACCT CTGCAAGGTG CTTAGAGATG TTCACGGCGT TGACCCAGAG TCACAGGAGA AATCTGGAGT GTGGGATGTT AGGAGAGGAC GTTGGTTACT TAAACCTAAT GCGAAAAGTC ACGCGTGGGG TGTGGCAGAA GACGCCAACC ACAAGTTGGT TATTGTGTTA CTCAACTGGG ATGACGGAAA GCCGGTTTGT GATGAGACAT GGTTCAGGGT GGCGGTGTCA AGCGATTCCT TGATATATTC GGATATGGGA AAACTTAAGA CGCTCACGTC TTGCAGTCCA AATGGTGAGC CACCGGAGCC TAACGCCAAA GTAATTTTGG TCGATGGTGT TCCCGGTTGT GGAAAAACGA AGGAGATTAT CGAAAAGGTA AACTTCTCTG AAGACTTGAT TTTAGTCCCT GGGAAGGAAG CTTCTAAGAT GATCATCCGG AGGGCCAACC AAGCTGGTGT GATAAGAGCG GATAAGGACA ATGTTAGAAC GGTGGATTCC TTCTTGATGC ATCCTTCTAG AAGGGTGTTT AAGAGGTTGT TTATCGATGA AGGACTAATG CTGCATACAG GTTGTGTAAA TTTCCTACTG CTGCTATCTC AATGTGACGT CGCATATGTG TATGGGGACA CAAAGCAAAT TCCGTTCATT TGCAGAGTCG CGAACTTTCC GTATCCAGCG CATTTTGCAA AACTCGTCGC TGATGAGAAG GAGGTTAGAA GAGTTACGCT CAGGTGCCCG GCTGATGTTA CGTATTTCCT TAACAAGAAG TATGACGGGG CGGTGATGTG TACCAGCGCG GTAGAGAGAT CCGTGAAGGC AGAAGTGGTG AGAGGAAAGG GTGCATTGAA CCCAATAACC TTACCGTTGG AGGGTAAAAT TTTGACCTTC ACACAAGCTG ACAAGTTCGA GTTACTGGAG AAGGGTTACA AGGATGTGAA CACTGTGCAC GAGGTGCAAG GGGAGACGTA CGAGAAGACT GCTATTGTGC GCTTGACATC AACTCCGTTA GAGATCATAT CGAGTGCGTC ACCTCATGTT TTGGTGGCGC TGACAAGACA CACAACGTGT TGTAAATATT ACACCGTTGT GTTGGACCCG ATGGTGAATG TGATTTCAGA AATGGAGAAG TTGTCCAATT TCCTTCTTGA CATGTATAGA GTTGAAGCGG GGGTCCAATA GCAATTACAG ATCGATGCAG TATTCAGGGA CAGCAACTTG TTTGTTCAGA CGCCCAAGTC AGGAGATTGG CGAGATATGC AATTTTACTA TGACGCTCTT CTTCCCGGAA ACAGTACTAT TCTCAATGAA TTTGATGCTG TTACGATGAA TTTGAGGGAT ATTTCCTTAA ACGTCAAAGA TTGCAGAATC GACTTCTCCA AATCCGTGCA ACTTCCTAAA GAACAACCTA TTTTCCTCAA GCCTAAAATA AGAACTGCGG CAGAAATGCC GAGAACTGCA GGTTTGCTGG AAAATTTGGT TGCAATGATC AAAAGAAACA TGAATGCGCC GGATTTGACA GGGACAATTG ACATTGAGGA TACTGCATCT CTGGTGGTTG AAAAGTTTTG GGATTCGTAT GTTGACAAGG AATTTAGTGG AACGAACGAA ATGACCATGA CAAGGGAAAG TTTTTCTAGA TGGCTTTCGA AACAAGAGTC ATCTACAGTT GGTCAGTTAG CGGACTTTAA CTTTGTGGAT TTGCCGGCAG TAGATGAGTA CAAGCATATG ATCAAGAGTC AACCAAAGCA AAAGTTAGAC TTGAGTATTC AAGACGAATA TCCTGCATTG CAGACGATAG TCTACCATTC GAAAAAGATC AATGCGATTT TCGGTCCAAT GTTTTCAGAA CTTACGAGGA TGTTACTCGA AAGGATTGAC TCTTCGAAGT TTCTGTTCTA CACCAGAAAG ACACCTGCAC AAATAGAGGA CTTCTTTTCT GACCTAGACT CAACCCAGGC GATGGAAATT CTGGAACTCG ACATTTCGAA GTACGATAAG TCACAAAACG AGTTCCATTG TGCTGTAGAG TACAAGATCT GGGAAAAGTT AGGAATTGAT GAGTGGCTAG CTGAGGTATG GAAACAAGGA CACAGAAAAA CGACCTTGAA AGATTATACG GCCGGAGTCA AAACATGTCT TTGGTATCAA AGGAAAAGTG GTGATGTGAC AACCTTTATT GGTAATACCA TCATCATTGC AGCCTGTTTG AGCTCAATGA TCCCCATGGA CAAAGTGATA AAGGCAGCTT TTTGTGGAGA CGATAGCCTG ATTTACATTC CTAAAGGTTT AGACTTGCCT GATATTCAGG CGGGCGCGAA CCTCATGTGG AACTTCGAGG CCAAACTCTT CAGGAAGAAG TATGGTTACT TCTGTGGTCG TTATGTTATT CACCATGATA GAGGAGCCAT TGTGTATTAC GATCCGCTTA AACTAATATC TAAGTTAGGT TGTAAACATA TTAGAGATGT TGTTCACTTA GAAGAGTTAC GCGAGTCTTT GTGTGATGTA GCTAGTAACT TAAATAATTG TGCGTATTTT TCACAGTTAG ATGAGGCCGT TGCCGAGGTT CATAAGACCG CGGTAGGCGG TTCGTTTGCT TTTTGTAGTA TAATTAAGTA TTTGTCAGAT AAGAGATTGT TTAGAGATTT GTTCTTTGTT TGATAATGTC GATAGTCTCG TACGAACCTA AGGTGAGTGA TTTCCTCAAT CTTTCGAAGA AGGAAGAGAT CTTGCCGAAG GCTCTAACGA GGTTAAAAAC CGTGTCTATT AGTACTAAAG ATATTATATC TGTCAAGGAG TCGGAGACTT TGTGTGATAT AGATTTGTTA ATCAATGTGC CATTAGATAA GTATAGATAT GTGGGTATCC TAGGAGCTGT TTTTACCGGA GAGTGGCTAG TGCCAGACTT CGTTAAAGGT GGAGTGACGA TAAGTGTGAT AGATAAGCGT CTGGTGAACT CAAAGGAGTG CGTGATTGGT ACGTACAGAG CCGCAGCCAA GAGTAAGAGG TTCCAGTTCA AATTGGTTCC AAATTACTTT GTGTCCACCG TGGACGCAAA GAGGAAGCCG TGGCAGGTTC ATGTTCGTAT ACAAGACTTG AAGATTGAGG CGGGTTGGCA GCCGTTAGCT CTGGAAGTAG TTTCAGTTGC TATGGTCACC AATAACGTTG TCATGAAGGG TTTGAGGGAA AAGGTCGTCG CAATAAATGA TCCGGACGTC GAAGGTTTCG AAGGTGTGGT TGACGAATTC GTCGATTCGG TTGCAGCATT TAAAGCGGTT GACAATTTCA GGAAGAGGAA AAAGAAGGTT GAAGAAAGGG ATGTAGTAAG TAAGTATAAA TATAGACCGG AGAAATACGC CGGTCCTGAT TCGTTTAATT TAAAAGAAGA AAATGTCTTA CAACATTACA AACCCGAATC AGTACCAGTA CTTCGCAGCG GTGTGGGCAG AGCCCATACC AATGCTTAAC CAGTGCATGT CGGCGTTGTC GCAATCGTAC CAAACACAAG CTGCGAGAGA CACTGTTAGA CAGCAATTCT CAAACTTGTT AAGTGCGGTT GTGACGCCGA GCCAGCGGTT CCCAGATACA GGGTCCCGGG TGTATGTTAA CTCGGCTGTT ATAAAGCCGT TGTACGAGGC TCTTATGAAG TCCTTTGATA CTAGAAATAG GATCATAGAG ACGGAAGAGG AGTCACGCCC ATCAGCTTCC GAAGTAGCTA ATGCAACACA GCGTGTTGAT GACGCGACCG TTGCCATTAG AAGTCAAATT CAGCTTTTGC TGAGTGAGCT TTCTAATGGA CATGGTTATA TGAATAGGGC AGAGTTCGAG GCTTTATTGC CATGGACTAC TGCGCCTGCT ACTTAGGCGT AGTGCGCACG ATAGCGCATA GTGTTTTTCT CTCCACTTAA ATCGAAGAGA TAAACTTACG GTGTAATTCC GTGAGGGAGG CGTAAACCAA ATTACGCAAT GTTTTGGGTT CCATTAAAAT CGAAACCCCT TATTTCCTGG ATCACCTGTT AACGCACGTT TGACGTGTAT TACAGTGGGC ATAAGTAAAA GTGAGAGGTT CGAATCCTCC CTAACCCCGG GTAGGGGCCC A

Products

Productgag
MAQFQQTIDM QTLQAAAGRN SLVNDLASRR VYDNAVEELN ARSRRPKVHF SKAVSTEQTL IATNAYPEFE ISFTHTQSAV HSLAGGLRSL ELEYLMMQVP FGSLTYDIGG NFSAHLFKGR DYVHCCMPNL DVRDIARHEG HKEAIYSYVN RLKRQQRPVP EYQRAAFNNY AENPHFVHCD KPFQQCELTT AYGTDTYAVA LHSIYDIPVE EFGSALLRKN VKTCFAAFHF HENMLLDCDT VTLDEIGATF QKSGDNLSFF FHNESTLNYT HSFSNIIKYV CKTFFPASQR FVYHKEFLVT RVNTWYCKFT RVDTFTLFRG VYHNNVDCEE FYKAMDDAWH YKKTLAMLNA ERTIFKDNAA LNFWFPKVRD MVIVPLFDAS ITTGRMSRRE IMVNKDFVYT VLNHIKTYQA KALTYANVLS FVESIRSRVI INGVTARSEW DTDKAILGPL AMTFFLITKL GHVQDEIILK KFQKFDRTTN ELIWTSLCDA LMGVIPSVKE TLVRGGFVKV AEQALEIKVP ELYCTFADRL VLQYKKAEEF QSCDLSKPLE ESEKYYNALS ELSVLENLDS FDLEAFKTLC QQKNVDPDMA AKVVVAIMKS ELTLPFKKPT EEEISESLKP GEGSCAEHKE VLSLQNDAPF PCVKNLVEGS VPAYGMCPKG GGFDKLDVDI ADFHLKSVDA VKKGTMMSAV YTGSIKVQQM KNYIDYLSAS LAATVSNLCK VLRDVHGVDP ESQEKSGVWD VRRGRWLLKP NAKSHAWGVA EDANHKLVIV LLNWDDGKPV CDETWFRVAV SSDSLIYSDM GKLKTLTSCS PNGEPPEPNA KVILVDGVPG CGKTKEIIEK VNFSEDLILV PGKEASKMII RRANQAGVIR ADKDNVRTVD SFLMHPSRRV FKRLFIDEGL MLHTGCVNFL LLLSQCDVAY VYGDTKQIPF ICRVANFPYP AHFAKLVADE KEVRRVTLRC PADVTYFLNK KYDGAVMCTS AVERSVKAEV VRGKGALNPI TLPLEGKILT FTQADKFELL EKGYKDVNTV HEVQGETYEK TAIVRLTSTP LEIISSASPH VLVALTRHTT CCKYYTVVLD PMVNVISEME KLSNFLLDMY RVEAGVQ
Productgag-pol
DescriptionRNA-dependent RNA polymerase
Modifications3389..3391,aa:OTHER
MAQFQQTIDM QTLQAAAGRN SLVNDLASRR VYDNAVEELN ARSRRPKVHF SKAVSTEQTL IATNAYPEFE ISFTHTQSAV HSLAGGLRSL ELEYLMMQVP FGSLTYDIGG NFSAHLFKGR DYVHCCMPNL DVRDIARHEG HKEAIYSYVN RLKRQQRPVP EYQRAAFNNY AENPHFVHCD KPFQQCELTT AYGTDTYAVA LHSIYDIPVE EFGSALLRKN VKTCFAAFHF HENMLLDCDT VTLDEIGATF QKSGDNLSFF FHNESTLNYT HSFSNIIKYV CKTFFPASQR FVYHKEFLVT RVNTWYCKFT RVDTFTLFRG VYHNNVDCEE FYKAMDDAWH YKKTLAMLNA ERTIFKDNAA LNFWFPKVRD MVIVPLFDAS ITTGRMSRRE IMVNKDFVYT VLNHIKTYQA KALTYANVLS FVESIRSRVI INGVTARSEW DTDKAILGPL AMTFFLITKL GHVQDEIILK KFQKFDRTTN ELIWTSLCDA LMGVIPSVKE TLVRGGFVKV AEQALEIKVP ELYCTFADRL VLQYKKAEEF QSCDLSKPLE ESEKYYNALS ELSVLENLDS FDLEAFKTLC QQKNVDPDMA AKVVVAIMKS ELTLPFKKPT EEEISESLKP GEGSCAEHKE VLSLQNDAPF PCVKNLVEGS VPAYGMCPKG GGFDKLDVDI ADFHLKSVDA VKKGTMMSAV YTGSIKVQQM KNYIDYLSAS LAATVSNLCK VLRDVHGVDP ESQEKSGVWD VRRGRWLLKP NAKSHAWGVA EDANHKLVIV LLNWDDGKPV CDETWFRVAV SSDSLIYSDM GKLKTLTSCS PNGEPPEPNA KVILVDGVPG CGKTKEIIEK VNFSEDLILV PGKEASKMII RRANQAGVIR ADKDNVRTVD SFLMHPSRRV FKRLFIDEGL MLHTGCVNFL LLLSQCDVAY VYGDTKQIPF ICRVANFPYP AHFAKLVADE KEVRRVTLRC PADVTYFLNK KYDGAVMCTS AVERSVKAEV VRGKGALNPI TLPLEGKILT FTQADKFELL EKGYKDVNTV HEVQGETYEK TAIVRLTSTP LEIISSASPH VLVALTRHTT CCKYYTVVLD PMVNVISEME KLSNFLLDMY RVEAGVQQQL QIDAVFRDSN LFVQTPKSGD WRDMQFYYDA LLPGNSTILN EFDAVTMNLR DISLNVKDCR IDFSKSVQLP KEQPIFLKPK IRTAAEMPRT AGLLENLVAM IKRNMNAPDL TGTIDIEDTA SLVVEKFWDS YVDKEFSGTN EMTMTRESFS RWLSKQESST VGQLADFNFV DLPAVDEYKH MIKSQPKQKL DLSIQDEYPA LQTIVYHSKK INAIFGPMFS ELTRMLLERI DSSKFLFYTR KTPAQIEDFF SDLDSTQAME ILELDISKYD KSQNEFHCAV EYKIWEKLGI DEWLAEVWKQ GHRKTTLKDY TAGVKTCLWY QRKSGDVTTF IGNTIIIAAC LSSMIPMDKV IKAAFCGDDS LIYIPKGLDL PDIQAGANLM WNFEAKLFRK KYGYFCGRYV IHHDRGAIVY YDPLKLISKL GCKHIRDVVH LEELRESLCD VASNLNNCAY FSQLDEAVAE VHKTAVGGSF AFCSIIKYLS DKRLFRDLFF V

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