Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200317"

Accession numberr200317 [export]
Locus nameSelPa
Recode1 nameSelPa_s_euk_drer
Descriptionselenoprotein P
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismDanio rerio [details]

Sequence

GenBank IDsAF322071.1,NM_178297.2
SequencemRNA of 2224 nucleotides [sequence]
OrganisationSECIS (2) [see structure] [see structure]

Recoding event

Event typeSelenocysteine (positions: 247, 871, 889, 907, 940, 946, 952, 1000, 1030, 1036, 1078, 1084, 1108, 1129, 1135, 1156, 1162)
DescriptionSelenocysteine incorporation.
GAACTAGCTC AGAAAGTTTC GCTGCTGAAG ACCCTCAAGG AAAACAAGTT AGTGGGTCTG TTGTTTGGAG TCATGTGGAA GGCACTCAGC CTTACCTTGG CTCTCTGCCT GCTGGTGGGC TGCAGTGCAG AGAGCGAAAC AGAAGGAGCC CGCTGTAAAC TTCCTCCCGA GTGGAAGGTT GGGGATGTGG AGCCCATGAA GAACGCTCTT GGACAAGTGA CAGTGGTGGC TTACCTCCAG GCCAGCTGAT TGTTCTGTCT GGAGCAAGCA TCAAAGCTTA ATGACTTGCT CCTGAAGCTG GAGAACCAGG GTTATCCAAA TATAGCCTAC ATGGTGGTAA ACAACCGTGA GGAAAGGTCC CAGCGGCTGC ACCACCTGCT TCAAGAAAGG CTGTTGAACA TCACCCTCTA CGCCCAAGAT CTCAGCCAGC CGGACGCCTG GCAGGCTGTA AATGCTGAGA AGGATGACAT TTTGGTCTAT GACAGGTGTG GCCGACTCAC TTACCATCTG TCACTTCCCT ACACCATCCT GAGCCACCCA CATGTGGAGG AGGCTATAAA ACATACATAC TGTGATCGCA TTTGCGGAGA GTGCAGCCTG GAGAGTTCAG CGCAACTTGA AGAGTGCAAG AAAGCCACAG AAGAAGTGAA TAAACCGGTG GAAGAAGAAC CTCGTCAAGA TCATGGTCAT CATGAACATG GTCATCACGA GCATCAAGGA GAGGCGGAAA GGCACAGACA TGGCCACCAT CATCCCCACC ACCACCATCA CCACCACCGA GGCCAACAAC AGGTTGATGT GGACCAGCAG GTCCTATCCC AGGTTGACTT TGGTCAGGTG GCTGTTGAAA CACCAATGAT GAAACGGCCT TGAGCAAAGC ACAGCAGGTG AAAAGTGCAG TACAGCTGAC AGCAGGGGGC AGATTCCCCT GTGGCCAGCT GATGCTGACA CTGACGACAG CTCTTTGGCG GAGAGGGCAA CGGGCGCGTG GCAGGTCTCT GACACTGTGA TGAGCCTCTT CCGGCCTCCT GACCCTGACA GGGCCTGAAG GAGCAGGACA ACCACATCAA GGAGACCTGA CAGTGACGTC CCGCCCCTCC GGCCGAATGA GAGCTGTCGC AACCAACCTG AGTCTGACCA GCAGGGGACG CCACTTGAGG GTGACGAAAG AAGTAAACAG GGAGCAATCA ATAATATCAG CATGTAAACA TCAAGTCACT GCTGGTTAAC ACTCAAGGTG AAACTTACCA ACTAGTATTT AAACCTCAGT GTGAGGCAGC ACTGGACTTT AGCATCCCGA TTTGCAAATT AGTTCTTGTT CAATGCAAGA TAATCAAATC AGGAACATCA AAATAAAACA GTTTTGATTT GGCAAAAACA AAGAAACTGC AAGTAACACA TTGAATCCAT TTTTAAGTAT TGTCTTGTAA AACATACACC TAATTTCCCC TAAAAATCAT AAATGTGATT TTTTTATCTG GTTAAATCTG ACTTTAACTG GTCCAGTGTC TGTATTTTTT CACCTGAGAG TGTGTTCGGT TCATCATGTT AGTGTCTTTT CACCTCTAAA TGCTTTATGT GGTCTTTATG AAGGCAGGTG CAGAAACTAT GCACTAGTGG TGTCTGTCTG ATGTTTGGCC ATACAGAGCA GAGGGCAAAG GTCATGTAAC ATCCTGTAAC CTTGGCTATA CCTAATAAAA ATTTTGGGGT ATTAAAATCT ATTTTTCTTA AAGTTCTAGT TTTCAGAAAG ATGTTTTTAT TGTGTGGAGA AGCAGTAGAA GTGGTTAAGT AGGTGGAAAG TTTATTTTTA AAAAAAGACC AAACACTTTT GAATCACTTT ATTGGGATCA GTTTCTGTTT TCTAATAGTT ACTAGTATGT CTGTTGTTTT AGGTATACTT GGCATTACAA TAAAAGCAAT GTTACTGGAT TATAGGGAAA TGCACAAAGC CTGTATCTTG TACTACACTT TTTTTTAGAG ATGAGCAAGA ATTTAATGGA GTAACAAGTG AAAGATTGGG TTGTTGTTTT ATGATAGATG GTTTTAAACA TTTTTTATAC TTAATGAAGG TTTTCTGGTA AATCTTGTAT CACCTGGAAG ACCCGAGAAA CTGTATGGAA ATGTATGCTG TGGTATAAAT GAATGTGAAA TGTATGTGAA ATGGAAGAGG GAAAATATGT TACTCAGATA AATTCAAATA AAGTAAAAAA TAAAATAAAA AAAA

Product

ProductSelP
Descriptionselenoprotein P, antioxidant? selenium storage (or transport)?
Modifications247..249,aa:Sec|871..873,aa:Sec|889..891,aa:Sec|907..909,aa:Sec|940..942,aa:Sec|946..948,aa:Sec|952..954,aa:Sec|1000..1002,aa:Sec|1030..1032,aa:Sec|1036..1038,aa:Sec|1078..1080,aa:Sec|1084..1086,aa:Sec|1108..1110,aa:Sec|1129..1131,aa:Sec|1135..1137,aa:Sec|1156..1158,aa:Sec|1162..1164,aa:Sec
MWKALSLTLA LCLLVGCSAE SETEGARCKL PPEWKVGDVE PMKNALGQVT VVAYLQASUL FCLEQASKLN DLLLKLENQG YPNIAYMVVN NREERSQRLH HLLQERLLNI TLYAQDLSQP DAWQAVNAEK DDILVYDRCG RLTYHLSLPY TILSHPHVEE AIKHTYCDRI CGECSLESSA QLEECKKATE EVNKPVEEEP RQDHGHHEHG HHEHQGEAER HRHGHHHPHH HHHHHRGQQQ VDVDQQVLSQ VDFGQVAVET PMMKRPUAKH SRUKVQYSUQ QGADSPVASU CUHURQLFGG EGNGRVAGLU HCDEPLPASU PUQGLKEQDN HIKETUQURP APPAEUELSQ PTUVUPAGDA TUGURKK

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