Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200318"

Accession numberr200318 [export]
Locus nameSelPb
Recode1 nameSelPb_s_euk_drer
Descriptionselenoprotein P
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismDanio rerio [details]

Sequence

GenBank IDsAF322072.1,NM_178298.2
SequencemRNA of 1267 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 238)
DescriptionSelenocysteine incorporation.
GAGGAGACAA AGGAACAGAT CTACAGTGGT TGAAGTCCAG CAGACGTGAT GCAGGCTCTG TGGCCTTTGC TGCTGTCTGC TCTTCCGGCT TTGCTGGGAG CTTCATCACT GTTCGTGGAA AAGGAAAGCA ATGGTTCGAG GATCTGTAAA CCTGCCCCGC AGTGGGAGAT CGATGGCAAG ACTCCCATGA AGGAGCTTCT GGGAAATGTA GTCGTCGTAG CTCTGCTTAA AGCCAGCTGA CATTTCTGTC TGACGCAGGC AGCCAGGCTG GGAGACCTGC GTGACAAGCT GGCTAATGGA GGACTGACTA ACATTTCATT CATGGTTGTG AATGAGCAGG ACTCTCAGTC CAGAGCCATG TACTGGGAGC TGAAGAGGAG GACAGCTCAG GACATCCCGG TGTACCAGCA GAGCCCACTG CAAAATGACG TCTGGGAGAT CCTGGAGGGA GACAAGGATG ATTTCTTAGT GTATGACAGA TGTGGATACC TCACCTTTCA CATTGTCCTG CCATTCAGTT TTCTTCACTA CCCTTATATA GAAGCTGCCA TCAGGGCTAC ATATCACAAA AACATGTGCA ACTGCTCACT AAATGCCAAC TTTTCCATAT CAGAAAGCTC TGACAGCACC AAAAATGACC CCGCAGGAGA AAACAACCAG CGGCCCAACA GTACAGAGCC AGTAACTGCT GCTCATCATC ATCATCATCA ACAACATGAG CCTCATCATC ATCATCATAA TCCATATCCA AATAGCCATA AAAAATCAGG CGATTCAGAT GTGACCGGGA AACCAAAGGA GCCACCCCAT CATTCTCATC AAGAACATGT TCACAACCAC AGATAGTTTT TAGTTTTATT ATTTTATTTT ATATAATGTT TTTTTTTTTG TAAATATATG GAGCTGCTCT TGTGTCAGAA CTTCATATTT ACCTCAGAGG GGGGTATTCG GTTGTCTTCA GTGTATTTTT GTTCTTAATG AAGTGTACAC TTTAACCCTG AGACAGGGGT CTGTATGCGG ATGCTGAACA CAGGAGTCAT TTATTTACAC TAAACTTCTG ATTTCCCCCC TTTTTGGGAA AATGTGATTG TGCTGAACTA AGTGGTTGCT TGGATTATTA TGTTAACAGC CTTTTTTTTG CTAATATGTT GTATGATATG TTAAGGAAAT GTAAACAGCC AAAAATGGTG TAAGATATGC AAAGAGCTGT AAAATAAATA CATACATGTT ACTAAATATT AATTTAAAAA AAAAAAAAAA AAAAAAA

Product

ProductSelP
Descriptionselenoprotein P, antioxidant? selenium storage (or transport)?
Modifications238..240,aa:Sec
MQALWPLLLS ALPALLGASS LFVEKESNGS RICKPAPQWE IDGKTPMKEL LGNVVVVALL KASUHFCLTQ AARLGDLRDK LANGGLTNIS FMVVNEQDSQ SRAMYWELKR RTAQDIPVYQ QSPLQNDVWE ILEGDKDDFL VYDRCGYLTF HIVLPFSFLH YPYIEAAIRA TYHKNMCNCS LNANFSISES SDSTKNDPAG ENNQRPNSTE PVTAAHHHHH QQHEPHHHHH NPYPNSHKKS GDSDVTGKPK EPPHHSHQEH VHNHR

Publication