Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200335"

Accession numberr200335 [export]
Locus nametopA
Recode1 nametopA_r_pro_bsub
DescriptionDNA topoisomerase
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismBacillus firmus [details]

Sequence

GenBank IDsZ14112.1
SequenceDNA of 1522 nucleotides [sequence]

Recoding event

Event typeReadthrough (position: 788)
DescriptionAll known DNA topisomerase 1 from other bacterias don't have inframe stop codon. Start codon for the first ORF has not been determined or predicted.
GATCTATGTA GCCCCTCCGT CCTCTTTACT ACCTGAAGGA GCATTAATCT GCGCTGCTGT AGGGCATATA TTAGAATTTC TTGAACCGGG TGAGTTGAAT GAGAAATATA AGTCCTATTC ATTAGATAGT TTGCCGATAA TCATAGACCT GTTTCAATAC AAGGTAGTTT CTGATAAAAA AGAGGTCTTA CAAAGGATAA AAGACACCAT CTTTGATAAG CGTGTGAAAA CCATCATTTT AGCAACAGAT GCTGCGGCTG AAGGCGAGTA CATAGGAAGA AATATTCTCT ATCGCCTTCA CTGTAAGAAA ACAATAAAAA GACTTTGGAC TTCTAGTATG ACAGCATTTT CTATTCAAAA AGCTTTCAGC CAATTGAAAG CAGATGCTGA AACATTACCA CTATATTATC AGGCAAAGGC CAGAGCTGAG TCTGATTATA TGATTGGACT GACCCTATCT AGAGCCTATG GCATCCTATT AAAGGAGCAA GGAATTGTCC CTCATAACAC AACGATCAGC TTAGGGAGGG TGCAAACGCC TTTATTAGCA GAGATCGTTA AAAGAGAGCG GCTACTTGAA CAATTTACAG CAGAAAATTT TTGGACAGTA AAAGCAACCT TTAATAATCA AGGGAATGTT TATGAAGGGG AATGGTTCCA CGAAAAGGAA AACCGAATTT TTACAGAAGA ACAAGATGAG CAATTATGCG AGTTAGTTCG CAATCAGTCA AGTACGATTA TGGAAATGAA AGAAGAAATG CGAACGTATC AGCCCCCCTT ATTATATTGA TTATCTACTT TACAAATGGA CGCTGGTAAT GCTTTTGGCT TTAAACCTGC AGAAACATTA AAATATGCTC AATCCCTTTA CGATAAAGGA TATTTGAGCT ACCCTCGTAC ACAAGATGAG CGCATAACTG AAAGTGATGC TCGTGAATTA GAAAATAATA TACAATTTCT AAGCGGCCAT GATACATCTG GTGCACTATT TCCTCTCCCT GTAAGCACTC TTATGAACAA TAAACGTTAT ATAGGGGAAG TAACCGATCA CCACGCTCTT CTTATTACAG ATAAAATTCC TAAAGATAAG GATCTATCAG AGGATGAAAA GTCTATCTAT CATTTAGTTG TAAAACGAAT CCTTGCAGCT CATTATCCTG ATGTCGCTAT GTCCCATAAA GAAATAATAA CAAAGGTGAT GGACCGCTTT ACATTTAGAA GTAAAGGGAA AGAATTGCTT TCCAAAGGTC GGCACCATAT TATTCCTCCT ACAAATGAAA ATGATATCAT GTTACCTACA CTTTTAAAGG GAAGCGAAGG TGTTGTTACA GACACTCTCA CTACTAAGTC TAAGACTAAG CCACCAAATC GCTACACCTC TTCGAGTCTA ATTGGATTTA TGAAGAATGC TGCACAGGCC ATAGAAGATG AAGATAGGAA ATCGATTAGC AACTTACCTT TGGGTACTGA GGCAACTCGA GCGGGGCTAA CTCACCTAGT TAGAATCGAG AAAATATATT GA

Product

ProducttopA
DescriptionDNA topoisomerase I, Catalyzes the relaxation of negatively supercoiled DNA
Modifications788..790,aa:OTHER
MTAFSIQKAF SQLKADAETL PLYYQAKARA ESDYMIGLTL SRAYGILLKE QGIVPHNTTI SLGRVQTPLL AEIVKRERLL EQFTAENFWT VKATFNNQGN VYEGEWFHEK ENRIFTEEQD EQLCELVRNQ SSTIMEMKEE MRTYQPPLLY QLSTLQMDAG NAFGFKPAET LKYAQSLYDK GYLSYPRTQD ERITESDARE LENNIQFLSG HDTSGALFPL PVSTLMNNKR YIGEVTDHHA LLITDKIPKD KDLSEDEKSI YHLVVKRILA AHYPDVAMSH KEIITKVMDR FTFRSKGKEL LSKGRHHIIP PTNENDIMLP TLLKGSEGVV TDTLTTKSKT KPPNRYTSSS LIGFMKNAAQ AIEDEDRKSI SNLPLGTEAT RAGLTHLVRI EKIY

Publication