Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200336"

Accession numberr200336 [export]
Locus nametrr1 (TR1; TrxR1)
Recode1 nametrr1_s_euk_btau
Descriptionthioredoxin reductase
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismBos taurus [details]

Sequence

GenBank IDsAF053984.1,NM_174625.2
SequencemRNA of 3535 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 1709)
DescriptionSelenocysteine incorporation at UGA codon.
AGTTCGCTCC AGTCCCGCAT TGCATCCGGA GCTGAAGGTG CTGGCACGTC CGGAGGATCG CCGGGTGTCC AAGGGCTCGC GTTCGTAGGA CGGGCTGGGC CTCGAGGGAG CGCTGTCCGA ACGGACCTCC AAAACCCTTG TGAAACGGAG AAAGATAGGC CACCATGGTC CGACCCTGAA GGCTTCTCAG GAAAACAGAC TTCAAAATCC AGTGAAAATG AATGGCTCCA AGGATCTCCC GGAGCCCTAT GACTACGACC TCATCATCAT TGGAGGGGGT TCTGGAGGAC TGGCAGCCGC CAAGGAGGCA GCCAAATATG ACAAGAAGGT GATGGTTCTG GATTTTGTCA CTCCAACCCC TCTTGGAACT AGATGGGGTC TTGGAGGAAC GTGTGTGAAT GTGGGTTGCA TACCTAAAAA ATTGATGCAC CAAGCAGCGT TGTTAGGTCA AGCCCTACGA GACTCTCGAA ACTATGGGTG GAACGTCGAG GAGACAGTTA AACATGACTG GGAGCGAATG ACAGAGGCGG TCCAGAACCA CATTGGTTCT CTCAACTGGG GCTACCGCGT GGCTCTGCGG GAGAAAAAGG TCACCTATGA GAACGCATAC GGAGAGTTTG TGGGGCCTCA TAGGATTAAG GCAACAAATA ACAAAGGCAA AGAGAAGATT TACTCAGCAG AGAGATTTCT CATTGCCACT GGTGAAAGGC CGCGTTATTT GGGTATCCCC GGTGACAAAG AATACTGTAT CAGCAGTGAT GATCTTTTCT CTCTACCTTA TTGCCCGGGT AAGACCCTGG TGGTTGGAGC ATCCTATGTT GCTTTGGAAT GTGCTGGATT TCTTGCTGGT ATTGGTTTAG ACGTCACTGT TATGGTACGA TCCATTCTCC TAAGAGGATT TGACCAGGAC ATGGCCAACA AAATTGGTGA ACATATGCAA GAACATGGTA TCAAGTTCAT AAGACAGTTT GTACCAATAA AAGTTGAACA AATTGAAGCA GGGACACCAG GCCGACTGAG AGTGATAGCT AAGTCCACCG ATAGTGACCA AACCATCGAA GGAGAGTATA ATACGGTATT GCTGGCAATA GGAAGAGATG CTTGCACGAG AAAAATTGGC TTAGAAAACG TGGGGGTAAA GATAAATGAA AAGACTGGAA AAATACCTGT CACAGAGGAA GAGCAAACCA ACGTGCCTTA CATCTATGCC ATCGGTGATA TATTGGAAGG GAAGCTGGAG CTCACCCCCG TGGCCATCCA GGCAGGAAGG CTGCTGGCTC AGAGGCTGTA TGGTGGCTCC ACTGTTAAGT GTGACTATGA AAACGTTCCA ACGACTGTTT TCACTCCTTT GGAATATGGG TCTTGTGGTC TTTCTGAGGA GAAAGCTGTG GAGAAATTTG GGGAAGAAAA TGTTGAGGTT TACCATAGTT ACTTTTGGCC ATTGGAATGG ACGATTCCAT CAAGGGATAA CAACAAATGT TACGCAAAAG TAGTCTGCAA TATCAAAGAC AATGAACGTG TTGTGGGCTT CCACGTACTG GGTCCAAATG CTGGAGAAGT GACCCAGGGC TTCGCAGCGG CGCTCAAATG TGGGCTGACC AAAGACCAGC TGGACAGCAC CATCGGAATC CACCCCGTTT GCGCAGAGGT GTTCACGACT CTGTCGGTGA CCAAGCGCTC CGGGGGAAAC ATCCTCCAGA CCGGTTGCTG AGGTTAAGCC CCAATGTAGA TGCTGCTGCC TAGACTCCAA ACCACTGATG TGTTTCTTGC CCAAGTCCAA GGCGAAGTGC TGCGAAAGGC TCTCGGGTTT GGCACCTGCG TGTCCCGTGC TTACACTCCT CGAGGCCCCC TTGGATCTCA CAGGCGGGAG GTGATTCGTG GAAGGCAGGC AGCATTGCAT TGGGGTTACC GTGATGGACT GAAAACTGGC TCTTGGCAGA GCATCAGAGC GATGCGTCCA TGAAGTCACC AGCCCCAAGC CCCTCGTGGT GGGTGGTGAT GGAACCGTCA AAGCAGTTTT CTCTTGGCCT TTCCTTTGTG GGTTTTCTTA CGCTCACCGT CAAGCTTTCT AATGTTGATT CTTTTTTCAC TTTTTCTTCT CGGTGTTAGT GATACTAGAG ATGATAGCAA ACAATTTTGG TCCAAAAGCA AGTCATGGCT ACCATGTGCA CATACAAGCG ACTCATCACC GGGAAAGCAT GGGGAAGCTC CCAGGCTCGT CCCGGGAGAG ACCGCCTTGT GGCCCACGTC TCCTCCCAGA ACAAGGGAAG CACGGTTGGC CAGTTTGCTC ACATGCCACA CCACTGGTGA TTGTTTCTAG TTCTGTTTAG AAGAGGCAGT GGCTACCCGG CCAGCCTATC TGAAGGAGTC TCCACCGCAG AGGACTCGGT AGTGCCGTGT GGTTTCCACA TTCTTCATCA TGGAGGCAGA TGTACACCTG AAATGGGGAA AAACAAAAGA TGTCTTTATT TAGCCTGTTG TGTGCTGGTC TAAGTGAGCT GAGATCTATT GCAATGGAAA ACATTTAGCG CTTGTTTAAA ACTGTTTTGG GGAGTAGCTT TGGCTTTAAG CTGAAATCAC AAGATACCAC AGCTTTATTT TTCATGTGTG CTAGGTATCT ATCCCTTCGA GAACTACATT CATAGGAAAA AAGCCTCTCT ACACTTGAAA ATTTAACTTT TGTGGTAATT GCTTTGCTTT TAAAAGGAAG CTGTTAATAT CATAATTTAT TATTTTTGAA CACAGGTGGA TGTGAAGGAT TTTCATTTAA AAACCAAGTG GGTTTGACTT TTTCTTTTGA CTGTACTTGG TGGAATTTGG GCAGAAGTGT TCATGCTCTG CCAGCATTCC AACTCGGATT ATCACAAAGA GGTATTAACC CTGCAGTTAG AGATTTCCGG CTACAGCTAC TGACTGTGCG TTATATCTAG GCCGTGTCCC CTCTGCAGAA GTAGAATGTT AAATATGCTG TGGCCGGCAG GCCTCCCACC AGCAGTTCTT GCAGCCCCCC AGCCCTCTTT TGGGGTCTTC CCTCTGTGTG TCTTTCTCAG CCACAACACT GAGCGGTTGA TTCAAAGTCC GTTTCTCGAT CACCTCAGGG AACTCGGTGT CTGCCCAGCA TTCGGTCAGC AGGGCCCCTG ACCTCCCACG GCCCTGCCTC ACCCCACCCC ATCTGGTTGT GTGAAGAGAA GGGAAAAAGG AAAAAGAGAG GGGAATTGAG GCAGCTGACT GTGTTCGGTT TTATTTATTA TTTTTTTAAA TTTTTTATTT TCCCCTCCAA GTCTGCCAAT TTCTGAAACT AGAGCACAGG CAGTACAGGG TGATCAAGCC TAATCATGTT GTGATTCTGT CTTCTTCGTG GAATGGAATA TTCTGCCCCC ACAAGAAGAA TCCCACCTTA TAGACTTGTC TCTGTAATCG CCTGGTGTAT TGAAACTCAT TAAATTCCAT GTATTTTTGT TATAAATATT CTGGAAGAAA AAAAAAAAGC AATGTGAAAC ATTAAAAGGT ATTAATATTC AAAAAAAAAA AAAAA

Product

Producttrr1
Descriptionthioredoxin reductase 1 (cytosolic); NADPH-dependent reduction of thioredoxin
Modifications1709..1711,aa:Sec
MNGSKDLPEP YDYDLIIIGG GSGGLAAAKE AAKYDKKVMV LDFVTPTPLG TRWGLGGTCV NVGCIPKKLM HQAALLGQAL RDSRNYGWNV EETVKHDWER MTEAVQNHIG SLNWGYRVAL REKKVTYENA YGEFVGPHRI KATNNKGKEK IYSAERFLIA TGERPRYLGI PGDKEYCISS DDLFSLPYCP GKTLVVGASY VALECAGFLA GIGLDVTVMV RSILLRGFDQ DMANKIGEHM QEHGIKFIRQ FVPIKVEQIE AGTPGRLRVI AKSTDSDQTI EGEYNTVLLA IGRDACTRKI GLENVGVKIN EKTGKIPVTE EEQTNVPYIY AIGDILEGKL ELTPVAIQAG RLLAQRLYGG STVKCDYENV PTTVFTPLEY GSCGLSEEKA VEKFGEENVE VYHSYFWPLE WTIPSRDNNK CYAKVVCNIK DNERVVGFHV LGPNAGEVTQ GFAAALKCGL TKDQLDSTIG IHPVCAEVFT TLSVTKRSGG NILQTGCUG

Publication