Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200345"

Accession numberr200345 [export]
Locus nametrr
Recode1 nametrr_s_euk_cele
Descriptionthioredoxin reductase
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismCaenorhabditis elegans [details]

Sequence

GenBank IDsNM_068684.2,AF162693.1,AF148217.1
SequencemRNA of 2088 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 1570)
DescriptionSelenocysteine incorporation at UGA codon.
ATGTATATCA AAGGAAATGC TGTTGGTGGT CTCAAAGAAC TTAAAGCTCT GAAGCAGGAT TATTTGAAAG AATGGCTTCG TGATCATACC TACGACCTGA TTGTCATTGG AGGAGGATCT GGAGGTCTTG CAGCAGCGAA AGAAGCTTCT CGATTAGGCA AAAAAGTCGC ATGTCTGGAT TTTGTGAAAC CATCACCACA AGGAACATCT TGGGGATTAG GAGGAACTTG TGTGAATGTC GGTTGTATTC CAAAGAAATT GATGCATCAA GCAAGTCTTT TGGGTCATTC TATTCATGAC GCGAAGAAAT ATGGTTGGAA ACTACCGGAA GGGAAAGTTG AGCATCAATG GAATCATTTG CGTGATTCTG TTCAAGATCA TATCGCTTCT TTGAATTGGG GTTACCGTGT GCAATTGAGA GAAAAGACGG TTACGTATAT CAATTCCTAC GGAGAGTTCA CTGGACCATT TGAAATTTCT GCGACAAATA AAAAGAAGAA AGTTGAAAAA CTCACTGCTG ATCGCTTCTT AATCTCCACT GGTCTTCGTC CTAAATATCC GGAAATTCCT GGAGTGAAAG AGTACACTAT AACTAGCGAT GATTTGTTCC AACTTCCATA TTCTCCTGGA AAAACCTTGT GTGTTGGTGC TTCGTACGTC TCATTGGAAT GTGCTGGATT TTTGCACGGT TTTGGATTTG ATGTTACGGT TATGGTTCGT TCTATTCTAC TTCGTGGATT TGATCAAGAT ATGGCTGAAC GAATTCGTAA GCATATGATC GCCTACGGCA TGAAATTCGA AGCAGGAGTC CCGACAAGAA TCGAGCAAAT CGACGAAAAA ACTGACGAAA AAGCTGGAAA GTATCGAGTA TTTTGGCCGA AAAAGAACGA AGAAACCGGA GAAATGCAAG AAGTTTCGGA GGAATATAAC ACGATTCTGA TGGCAATTGG AAGGGAAGCC GTAACTGATG ATGTTGGTCT TACAACGATT GGTGTCGAAA GAGCAAAGAG CAAGAAAGTA CTGGGAAGAC GTGAGCAGTC GACAACAATT CCATGGGTTT ATGCAATTGG TGACGTTTTG GAGGGAACAC CTGAATTGAC TCCAGTTGCT ATTCAAGCTG GAAGAGTTTT AATGAGACGA ATTTTCGATG GAGCAAATGA ATTGACGGAA TACGATCAAA TCCCAACAAC AGTCTTCACT CCTCTCGAAT ATGGTTGCTG TGGACTATCG GAGGAAGATG CAATGATGAA ATATGGAAAG GATAACATTA TAATCTATCA CAATGTATTC AATCCACTGG AATATACGAT TTCAGAAAGA ATGGATAAGG ACCATTGCTA TCTGAAGATG ATTTGTTTGA GAAATGAAGA GGAAAAAGTT GTGGGCTTCC ACATTCTCAC TCCAAATGCT GGTGAAGTGA CACAAGGATT CGGAATCGCG TTGAAATTGG CTGCAAAGAA AGCAGATTTT GATCGTCTCA TTGGAATTCA TCCAACTGTC GCGGAGAACT TCACCACGTT GACTCTTGAA AAGAAGGAAG GAGATGAGGA ATTACAAGCT TCTGGTTGCT GAGGTTAAGA AGGGTCCAAT TTGGGGGAGA ATTTGGGTTT TGGAATGAAA TGAACATTGA TTTTATTTAG GATCTCTTTT TTAAAATATG AATTCAAAAA AAAAAACAAA TAAACCTAAA ATCTCAATGT CATTTTATTT CATCACCTAC TCTCTTCAAA ATTGGACCGT CGGTGGTCGC TAGTAGAGGC AGCTTTGTGA CGACCTTTGG CTAAACTCCA TCGTGAGCGC CTCTGGTCTG ATGCGCCTCC AAAACGTCCA CCACCCCTGA TGATTTGTTT ATTATAGTTT GCATTGTATT TTCGAATCTT CAGGGTTGTT TGTTCTTGAC AATTGCCAAT TTTTCTAAGC GAAAAGTTTG ATTTAATTTT ATTCTACTTG GCAATTTTCA AAAACGAACA ATTATTCTCT TATCCAGTGT TTAAGTATGT CCTCTCACTT TTTTTTCAAT TTCAATCCCG TACTTCTTCC CTATTTTTGG GTAAATCCAA GCCTTTTTCA CTCTCTCTCT TAAATGCA

Product

Producttrr
Descriptionthioredoxin reductase; NADPH-dependent reduction of thioredoxin
Modifications1570..1572,aa:Sec
MYIKGNAVGG LKELKALKQD YLKEWLRDHT YDLIVIGGGS GGLAAAKEAS RLGKKVACLD FVKPSPQGTS WGLGGTCVNV GCIPKKLMHQ ASLLGHSIHD AKKYGWKLPE GKVEHQWNHL RDSVQDHIAS LNWGYRVQLR EKTVTYINSY GEFTGPFEIS ATNKKKKVEK LTADRFLIST GLRPKYPEIP GVKEYTITSD DLFQLPYSPG KTLCVGASYV SLECAGFLHG FGFDVTVMVR SILLRGFDQD MAERIRKHMI AYGMKFEAGV PTRIEQIDEK TDEKAGKYRV FWPKKNEETG EMQEVSEEYN TILMAIGREA VTDDVGLTTI GVERAKSKKV LGRREQSTTI PWVYAIGDVL EGTPELTPVA IQAGRVLMRR IFDGANELTE YDQIPTTVFT PLEYGCCGLS EEDAMMKYGK DNIIIYHNVF NPLEYTISER MDKDHCYLKM ICLRNEEEKV VGFHILTPNA GEVTQGFGIA LKLAAKKADF DRLIGIHPTV AENFTTLTLE KKEGDEELQA SGCUG

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