Recode v. 2.0 / Database of translational recoding events.
Details for "r200355"
| Accession number | r200355 [export] |
| Locus name | OAZ3 |
| Recode1 name | oaz3_p_euk_hsap |
| Description | Ornithine decarboxylase antizyme OAZ3 |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Homo sapiens [details] |
Sequence
| GenBank IDs | BP369217.1,BI830988.1,BP369551.1,BX338845.2,DB516005.2,BP371199.1,AK125876.1,DB450553.2,DB525959.2,BE792072.1,DR006306.1,AF175296.1,NM_016178.1,BI754531.1,BP370114.1,BU852647.1,DB460552.2 |
| Sequence | mRNA of 887 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 296) |
| Description | Efficiency of ODC antizyme biosynthesis is modulated by polyamine levels; sensor for an autoregulatory circuit. Spermatogenesis stage-specific. Its not found outside developing germ cells. Stimulatory sequences for oaz3 are not evident. |
GTTGCCTAAA CCTCTGCCAC CCACCTGTGA ACTTCACTTT GCCACAGGGA GGCACTGAAC TGAAAAACTG
CCTTGTAAGA GGTGTCGCCC CTCTGTCTAC TCCCTTTCTT ATATCAAGAG GGGAAAAACA CGTAACTACC
TCTACCCGAT CTGGTCACCA TACGCCTATT ACCTTTACTG TTACAAGTAC CGGATCACTC TCCGGGAGAA
GATGCTGCCT CGTTGTTATA AAAGCATCAC TTATAAGGAA GAGGAGGACT TGACACTCCA GCCCCGTTCC
TGCCTCCAGT GCTCCTGAGT CCCTAGTAGG CCTCCAGGAG GGCAAAAGCA CCGAGCAGGG TAACCACGAC
CAGCTTAAAG AACTGTATTC GGCTGGGAAC TTGACGGTGC TGGCTACTGA CCCCCTGCTC CACCAGGACC
CAGTACAGTT AGACTTTCAC TTCCGCCTTA CCTCCCAGAC CTCTGCCCAT TGGCACGGCC TTCTCTGTGA
CCGTCGACTC TTCCTGGATA TCCCATATCA GGCCTTGGAT CAAGGCAACC GGGAAAGTTT GACTGCAACC
CTGGAGTACG TGGAAGAGAA GACAAATGTG GACTCTGTGT TTGTGAACTT CCAGAATGAT CGGAACGACA
GAGGTGCCCT GCTGCGGGCC TTCAGCTACA TGGGCTTTGA GGTGGTCAGA CCAGATCACC CTGCCCTCCC
TCCCTTGGAC AATGTCATCT TTATGGTGTA TCCCCTTGAA AGGGATGTTG GCCACCTGCC CAGTGAGCCT
CCTTGAACAT GCTTATTCCA ACGCTTTGAG GGGCTGGAAG CCTTGACACA TGGAATCAGG GGCCCGGGAT
GTGATTCAGG ACACTTTCCA TCCTAGGAAT AAAGGGTAGT GCCATCC
Product
| Product | oaz3 |
| Description | ODC antizyme:1. Inhibition and targeting ODC for degradation; 2.Regulation of polyamine transport |
| Modifications | 295..297:ribosomal_frameshift |
MLPRCYKSIT YKEEEDLTLQ PRSCLQCSES LVGLQEGKST EQGNHDQLKE LYSAGNLTVL ATDPLLHQDP
VQLDFHFRLT SQTSAHWHGL LCDRRLFLDI PYQALDQGNR ESLTATLEYV EEKTNVDSVF VNFQNDRNDR
GALLRAFSYM GFEVVRPDHP ALPPLDNVIF MVYPLERDVG HLPSEPP
Publications
- Ivanov IP, Rohrwasser A, Terreros DA, Gesteland RF, Atkins JF. (2000) Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: antizyme 3. Proc Natl Acad Sci U S A. 97(9):4808-4813. [abstract]
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]