Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200359"

Accession numberr200359 [export]
Locus nameAZS
Recode1 nameoazs_p_euk_drer
DescriptionOrnithine decarboxylase antizyme AZS
Recode statusValidated

Organism

Genomic classEukaryota (Chromosome)
OrganismDanio rerio [details]

Sequence

GenBank IDsEH493027.1,EH544640.1,CT664938.2,CO812249.1,DR728100.1,CT589366.2,EL650603.1,EE701664.1,EH580951.1,EH521033.1,EH518648.1,CT609676.2,EH457490.1,EH498205.1,EH439769.1,EH571240.1,CN020443.1,EH998458.1,CT703802.2,EL650954.1,EH447276.1,EE718280.1,EE701449.1,EH437047.1,EE714754.1,EH506181.1,EH455801.1,EE715113.1,EH587260.1,CT638617.2,EH596459.1,EL648558.1,EH440843.1,EH507881.1,EG570612.1,EH539561.1,EH583817.1,EH498115.1,EH548426.1,CT704628.2,EH594727.1,EH999979.1,CT720294.2,EH446068.1,EH441602.1,EH550120.1,EE708028.1,EH456441.1,EE695590.1,AB017117.1,EH434015.1,EH587861.1,EH493285.1,EH501967.1,EH506996.1,CT689589.2,EH595134.1,EH547598.1,EH441830.1,EH436371.1,CT611073.2,CK363515.1,EH448412.1,CT691132.2,BC056307.1,EE695559.1,EH493188.1,EG578546.1,EH506492.1,EH494706.1,EH494359.1,NM_194264.1,EH537528.1,EG568664.1,EE717005.1,EH492324.1,EH579096.1,CT610443.2,EH543393.1,CT735767.2,EH548962.1,EH582172.1,EH594901.1,EH491347.1,EH447976.1,EH455576.1,EH486588.1,EE719847.1,EH484103.1,EH453610.1
SequencemRNA of 1194 nucleotides [sequence]
OrganisationPseudoknot (1) [see structure]

Recoding event

Event type+1 Frameshifting (position: 227)
DescriptionEfficiency of ODC antizyme biosynthesis is modulated by polyamine levels; sensor for an autoregulatory circuit. short isoform
CAGCCATTAA CACATTCGGT TGGAGCACGG ACGGAGAAGA TTTGGGCCTT GACGTTGGCC GGATGGTTAA ATCCAACCTT CAGACGATAC TGAATAGCCA CTGTTTTGTC AGAGAAAAAG AGAGTAATAT ACCCAAGATG CCAGTGATCG AACTGACCCG TAATAAACCC GAGAGTGAAA GTTCCCATCG CTGCAGTAAC CCGTGTCCGG GGCCTCTGTG GTGTTCCTGA TGTCCCTCTC CCACCCCTGA AGATCCCAGG TGGGCGAGGG AATGATCAGC GGGATCACAG TCTTTCAGCT AAGCTATTCT ATTCTGATGC TCAGTTACTG GTTCTTGAGG AAGCCCCTCA GTCGAACAGC CGTGTACGTT TTTTGCTCTT TGAGAGGCGT TGCTCTGTGA GCAAGCACTT AGTCTGGAGG GGGGCACTGA AGGGGACAAA CCTTTACATC GAAATCCCCA CTGGTGTCCT CCCAGAAGGG AGCAAAGATA GTTTTTCACT TTTGCTGGAG TTTGCAGAAG AAAAGTTACA GGTTGATCAC GTTTTCATCT GCTTCCATAA GAGCCGAGAT GACAGAGCAT CGCTGCTGCG GACATTCAGT TTCATGGGCT TTGAGATTGT GAGACCAGGT CATCCCCTCG TCCCAACCCG CCCCGACGCT TTCTTCATGG CTTACAGAAT CGAAAGAGAC TCCGATGGTG ACGAATAAGA CTCCTCAATC GCATCTTGCT TCTTATAACT ATGCTGTTTC TCACCCAACA TGGTCACCAT TAAAAGAAAC ATAGTATGAA TGTCAAATTG ACCTTTTTTC CTGTTATTTA CTACATTGTA GTTCTTGTAA GGGTTGTGCT GTATTTTTCA GTTGTATTTG CACTAGTGTA TACCAAATTT TCACAGTGAC CATTAGTTTT TAAGCCATCG GCCTTGGGCT TACTTTCCAA TGTAATTGGA TTCTTTGCTG ATTCCCATTC CCTCACTCAC CAATTTTAGA GCATAATATT TATGGTTGGA ATCCCTTAAG CAACAATGTA TGTAGAATTA TGGTTTTCAT TGCTGATATG TTGATTCTTT TTACTGTTGT CTTCAAGTTG TTTTGTTTCT AAATCTGTGC ATGAGTTTTG GAGTTTTTAG TTATTACTTC AATAGGATCG GTCTGCATGT TTGCTACAGT GTGCAGAATA AAAATGCTCA CCCT

Product

Productoazs
DescriptionODC antizyme:1. Inhibition and targeting ODC for degradation; 2.Regulation of polyamine transport
Modifications226..228:ribosomal_frameshift
MVKSNLQTIL NSHCFVREKE SNIPKMPVIE LTRNKPESES SHRCSNPCPG PLWCSDVPLP PLKIPGGRGN DQRDHSLSAK LFYSDAQLLV LEEAPQSNSR VRFLLFERRC SVSKHLVWRG ALKGTNLYIE IPTGVLPEGS KDSFSLLLEF AEEKLQVDHV FICFHKSRDD RASLLRTFSF MGFEIVRPGH PLVPTRPDAF FMAYRIERDS DGDE

Publications