Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200376"

Accession numberr200376 [export]
Locus nameprfB
Recode1 nameprfB_p_pro_aact
DescriptionBacterial release factor 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismAggregatibacter actinomycetemcomitans [details]

Sequence

GenBank IDs
SequencemRNA of 1099 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type+1 Frameshifting (position: 76)
DescriptionAutoregulation of RF2 biosynthesis.
ATGTTTGAAA TTAATCCTAT CAAAAATAAA ATCGCCGATT TAACCGACCG CACTTCCGTG CTTCGGGGGT ATCTTTGACT TCGACGCCAA ACTGGAGCGT TTAGAAGAAG TCAACGCCGA ACTGGAACAG CCTGACGTAT GGAACGATGC AGAGAAAGCG CAGGCGCTCG GCAAAGAACG CGTTTCTTTA GAACTGGTGG TCAACACCAT TAAAAATCTG GAACAAGGCT TGGAAGATGT GGACGGACTG TTGGAACTTG CCGTGGAAGC GGGTGATGAA GACACCTTCA ACGAAGCCAT CACCGAATTA AATGCGCTTG AACAACAACT CGAAAAATTA GAATTCCGCC GTATGTTCAG CGGTGAACAC GATGCCTGCG ATTGCTATGT GGATTTACAA GCGGGTTCAG GCGGTACGGA AGCGCAGGAC TGGACGGAAA TGTTATTGCG GATGTATTTG CGTTGGGCGG AAAGCAAAGG CTTCAAAACC GAATTAATGG AAGTTTCCGA CGGCGATGTG GCAGGGTTGA AATCCGCCAC CATCAAAGTG AGCGGCGAAT ACGCCTTCGG TTGGTTACGC ACCGAAACCG GCATTCACCG TTTGGTGCGC AAAAGCCCGT TCGATTCCAA TAACCGTCGC CATACCTCTT TCAGTGCCGC ATTTGTGTAT CCTGAAATTG ACGACGACAT TGACATCGAA ATCAATCCGG CAGACTTGCG TATCGATGTC TATCGCGCGT CCGGCGCAGG CGGTCAGCAC GTAAACAAAA CCGAAAGTGC GGTGCGAATT ACCCACATAC CAAGCGGCAT TGTAGTGCAA TGTCAAAATG ACCGTTCCCA GCACAAGAAT AAAGACCAGG CAATGAAGCA GTTAAAAGCG AAGTTGTACG AGCTGGAATT GCAAAAGAAA AACGCCGACA AACAAGCCAT GGAAGACAAT AAATCCGACA TCGGCTGGGG CAGCCAAATT CGTTCTTATG TGTTGGACGA TTCCCGCATT AAAGATTTAC GCACCGGCAT TGAAAACCGC AATACGCAAG CGGTGTTAGA CGGCGATTTG GATCGTTTTA TTGAAGCGAG TTTAAAGGCC GGCTTGTAA

Product

ProductprfB
DescriptionPeptide chain release factor 2 (RF2), recognizes UAA and UGA stop codons
Modifications75..77:ribosomal_frameshift
MFEINPIKNK IADLTDRTSV LRGYLDFDAK LERLEEVNAE LEQPDVWNDA EKAQALGKER VSLELVVNTI KNLEQGLEDV DGLLELAVEA GDEDTFNEAI TELNALEQQL EKLEFRRMFS GEHDACDCYV DLQAGSGGTE AQDWTEMLLR MYLRWAESKG FKTELMEVSD GDVAGLKSAT IKVSGEYAFG WLRTETGIHR LVRKSPFDSN NRRHTSFSAA FVYPEIDDDI DIEINPADLR IDVYRASGAG GQHVNKTESA VRITHIPSGI VVQCQNDRSQ HKNKDQAMKQ LKAKLYELEL QKKNADKQAM EDNKSDIGWG SQIRSYVLDD SRIKDLRTGI ENRNTQAVLD GDLDRFIEAS LKAGL

Publications